BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07200.2
Length=3484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311783 jgi|Araly1|311783|fgenesh1_pm.C_scaffold_1000563 4471 0.0
Ahg481905 jgi|Araly1|481905|fgenesh2_kg.4__965__AT2G29970.1 230 7e-59
> Ahg311783 jgi|Araly1|311783|fgenesh1_pm.C_scaffold_1000563
Length=2934
Score = 4471 bits (2421), Expect = 0.0
Identities = 2767/2937 (94%), Gaps = 11/2937 (0%)
Strand=Plus/Plus
Query 231 ATGCCGACGCCGGTGACTACGGCGAGAGAATGCTTGACGGAAGAAGCTGCTCGTGCCCTC 290
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1 ATGCCGACGCCGGTGACTACGGCGAGAGAATGCTTGACGGAGGAAGCTGCTCGTGCTCTC 60
Query 291 GACGATGCTGTTGTTGTAGCTCGTCGGAGAAGCCACGCGCAGACGACGTCTCTTCATGCA 350
||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GACGATGCTGTTGCTGTGGCTCGTCGGAGAAGCCACGCTCAGACGACGTCTCTTCATGCA 120
Query 351 GTTTCTGCTCTTTTAGCTATGCCGTCGTCGATTCTCCGTGAAGTTTGCGTCTCACGCGCC 410
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GTTTCTGCTCTTTTAGCTATGCCGTCGTCGATTCTCCGGGAAGTTTGCGTCTCACGCGCC 180
Query 411 GCTAGGAGTGTTCCTTACTCGTCGCGACTTCAATTCCGAGCTCTTGAGCTCTGCGTCGGT 470
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GCTAGGAGTACTCCTTACTCGTCGCGACTTCAATTCCGAGCTCTTGAGCTTTGCGTCGGC 240
Query 471 GTATCTCTCGACAGGCTTCCGTCGTCGAAGTCTCCGGCGACGGAAGAAGATCCACCGGTT 530
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTATCTCTCGACAGGCTTCCGTCGTCGAAGTCTCCGGCGACTGAAGAAGATCCACCGGTT 300
Query 531 TCGAATTCGCTCATGGCGGCGATCAAACGGTCTCAGGCGAACCAGAGACGGCATCCGGAG 590
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TCGAATTCGCTCATGGCGGCGATCAAACGGTCTCAGGCGAATCAGAGACGGCATCCGGAG 360
Query 591 TCGTATCATCTTCAGCAGATCCACGCTAGTAACAACGGCGGGGGAGGATGCCAGACGACG 650
||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct 361 ACGTATCATCTTCAGCAGATCCACGCCAGTAACAACGGCGGCGGCGGATGCCAAACGACG 420
Query 651 GTTTTGAAAGTCGAATTGAAGTATTTCATACTCTCGATCCTTGACGATCCGATTGTGAAT 710
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 421 GTTCTGAAAGTCGAATTGAAGTATTTCATACTATCGATCCTCGACGATCCGATTGTGAAT 480
Query 711 CGGGTATTCGGAGAAGCTGGGTTTCGGAGCTCCGAAATTAAGCTCGATGTGCTTCACCCT 770
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 481 CGGGTATTCGGCGAAGCTGGGTTTCGTAGCTCGGATATTAAGCTCGACGTGCTTCACCCT 540
Query 771 CCGGTAACACAACTT-TCTTCCCGTTTCTCTAGAGGTCGTTGTCCGCCTCTCTTCCTCTG 829
|||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 CCGGTAACGCAA-TTCTCTTCCCGTTTCTCTCGAGGTCGTTGTCCGCCTCTCTTCCTCTG 599
Query 830 TAATCTTCCCAACTCAGATCCGAATCGTGAGTTCCCGTTTAGTGGGAGCAGTGGTTTCGA 889
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 600 TAATCTTCCAAACTCAGATCCGAATCGTGAGTTCCCGTTTTGTGGGAGCAGTGGCTTCGA 659
Query 890 TGAAAATTCCCGGAGGATTGGAGAAGTATTAGGCAGGAAAGATAAGAAGAACCCTCTGCT 949
||||||||||||||| || ||||| || |||||| |||||||||||||||||||||||||
Sbjct 660 TGAAAATTCCCGGAGAATCGGAGATGTTTTAGGCCGGAAAGATAAGAAGAACCCTCTGCT 719
Query 950 TATTGGTAACTGTGCTAATGAAGCTCTTAAAACGTTCACGGATTCGATCAACAGTGGGAA 1009
| ||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 TGTTGGTAATTGCGCTAACGAAGCTCTTAAAACGTTCATGGATTCGATCAACAGTGGGAA 779
Query 1010 GTTAGGGTTTCTTCAGATGGATATTAGCGGATTAAGCTTGATTAGTATCGAGAAGGAGAT 1069
|||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 780 GTTAGGGTTTCTTCCGATGGATACTAGCGGATTAAGCTTGATTAGCATAGAGAAGGAGAT 839
Query 1070 TAGTGAGATTTTAGCCGATGGATCGAAAAACGAAGAAGAGATTCGAATGAAAGTGGATGA 1129
|||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 840 TAGTGAAATTTTAGCCGATGGATCGAAAAACGAAGAGGAGGTTCGAGTGAAAGTGGATGA 899
Query 1130 CCTAGGAAGAACTGTAGAGCAAAGTGGCTCGAAATCGGGGATAGTGCTTAATCTGGGAGA 1189
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 CCTAGGAAGAATTGTAGAGCAAAATGGCTCGAAATCGGGGATAGTGCTTAATCTGGGAGA 959
Query 1190 GCTCAAGGTTTTGACCAGTGAAGCCAATGCGGCTCTTGAGATTTTGGTGTCGAAGCTTTC 1249
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 960 GCTCAAGGTTTTGACCAGTGAAGCTAATGCTGCTCTTGAGAATTTGGTGTCGAAGCTTTC 1019
Query 1250 GGATTTGCTGAAACATGAAAGTAA-ACAACTTTCGTTCATCGGATGTGTATCGAGTAATG 1308
|||||||||||||||| |||||| | |||||| ||||||||||||||||||||| || |
Sbjct 1020 GGATTTGCTGAAACATCCAAGTAAGA-AACTTTGGTTCATCGGATGTGTATCGAGCAACG 1078
Query 1309 AGACTTACACGAAGCTTATTGATCGGTTTCCTACTATAGAGAAGGATTGGGACCTTCATG 1368
||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 1079 AGACTTACACGAAGCTTATCGATCGGTTCCCTACAATCGAGAAGGATTGGGACCTTCATG 1138
Query 1369 TTCTTCCAATCACAGCCTCTACTAAACCTTCGACTCAAGGGGTTTATCCCAAATCGAGCT 1428
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1139 TTCTTCCAATCACAGCCTCTACTAAACCTTCGAGTCAAGGGGTTTATCCAAAATCAAGCT 1198
Query 1429 TGATGGGATCCTTTGTTCCCTTTGGAGGGTTCTTCTCATCAACATCAAATTTCAGAGTTC 1488
||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||| |
Sbjct 1199 TGATGGGATCCTTTGTTCCTTTTGGAGGCTTCTTCTCGTCAACATCAGATTTCAGAGTAC 1258
Query 1489 CATTGAGTAGCACAGTGAATCAGACGCTCTCTAGATGCCACCTCTGCAACGAGAAGTATT 1548
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CGTTGAGTAGCACAGTGAATCAGACGCTCTCTAGATGCCACCTCTGCAACGAGAAGTATT 1318
Query 1549 TGCAAGAAGTAGCCGCTGTTCTCAAGGCCGGTTCGAGTCTTTCTCTGGCTGACAAATGTT 1608
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1319 TGCAAGAAGTAGCCGCTGTTCTCAAGGCCAGTTCGAGTCTTTCTCTGGCTGACCAATGTT 1378
Query 1609 CCGAGAAGTTAGCCCCAT-GGCTACGGGCTATTGAGACCAAAGAAGACAAGGGAATAACA 1667
|||||||||| ||||| | |||| |||||| | |||||||||||||||||||||| ||||
Sbjct 1379 CCGAGAAGTT-GCCCCCTTGGCTTCGGGCTGTAGAGACCAAAGAAGACAAGGGAACAACA 1437
Query 1668 GGCAGCAGTAAGGCTTTAGATGACGCTAATACATCAGCCTCGCAAACCGCTGCTCTACAG 1727
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1438 GGCAGCAGTAAGGCTTTAGATGACGCTAACACATCAGCCTCGCAAACCGCAGCTCTGCAG 1497
Query 1728 AAGAAATGGGACAACATATGCCAAAGTATCCATCACACTCCGGCGTTTCCTAAACTTGGT 1787
||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||
Sbjct 1498 AAGAAATGGGACAACATATGCCAAAGTATCCATCAAACTCCAGCAATTCCTAAACTCGGT 1557
Query 1788 TTTCAGTCGGTGAGTCCGCAGTTCCCAGTTCAGACTGAGAAGAGTGTGAGAACTCCTACA 1847
|||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1558 TTTCAGTCAGTGAGTTCGCAGTTCCCAGTTCAGACAGAGAAGAGTGTGAGAACTCCTACA 1617
Query 1848 AGCTATTTGGAGACGCCTAAACTGCTGAATCCGCCAATCTCAAAGCCAAAACCTATGGAG 1907
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AGCTTTTTGGAGACGCCTAAACTGCTGAATCCGCCAATCTCAAAGCCAAAACCTATGGAG 1677
Query 1908 GATCTTACGGCATCGGTGACTAACCGCACAGTGAGTTTGCCTTTGAGCTGTGTTACTACA 1967
|||| || |||| |||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1678 AATCTCACCACATCAGTGACTAACCGCACAGTGAGTTCGCCTTTGAGCTGTGTTACGACA 1737
Query 1968 GATTTTGGGTTGGGAGTAATCTATGCATCCAAAAACCAGGAATCAAAAACAACGAGGGAG 2027
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1738 GATTTTGGGTTGGGAGTAATCTATGCATCAAAAAACCAGGAATCAAAAACAGCGAGGGAG 1797
Query 2028 AAACCGATGCTGGTGACTCTAAACTCTTCTTTAGAACATACATATCAGAAAGATTTCAAG 2087
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AAACCGCTGCTGGTGACTCTAAACTCTTCTTTAGAACATACATATCAGAAAGATTTCAAG 1857
Query 2088 TCTCTCAGAGAAATACTCTCTCGTAAAGTTGCCTGGCAGACCGAAGCTGTAAATGCCATA 2147
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1858 TCTCTCAGAGAATTACTCTCTCGTAAAGTTGCCTGGCAGACGGAAGCTGTGAATGCCATA 1917
Query 2148 AGCCAAATTATCTGCGGATGCAAAACCGACTCCACGCGAAGAAACCAAGCAAGCGGAATT 2207
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1918 AGCCAAATTATCTGCGGGTGCAAAACCGACTCCACGAGAAGAAACCAAGCAAGCGGAATT 1977
Query 2208 TGGCTGGCTCTTCTTGGACCCGATAAAGTGGGGAAGAAGAAAGTGGCGATGACTCTTTCT 2267
||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1978 TGGCTGGCTCTTCTTGGACCCGATAAAGTCGGGAAGAAGAAAGTGGCAATGGCTCTTTCT 2037
Query 2268 GAAGTCTTCTTTGGTGGTAAAGTCAATTACATATGTGTAGATTTTGGGGCAGAGCATTGT 2327
|||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct 2038 GAAGTCTTCTTTGGTGGTCAGGTCAATTGCATATGTGTAGATTTTGGGGCAGAGCATTGT 2097
Query 2328 TCCCTTGATGACAAATTCAGAGGCAAAACAGTGGTGGATTACGTAACCGGTGAGTTATCT 2387
| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2098 TTTCTTGATGACAAATTTAGAGGCAAAACAGTGGTTGATTACATAACCGGTGAGTTATCA 2157
Query 2388 AGGAAACCACACTCTGTTGTTTTACTCGAAAACGTGGAAAAAGCTGAGTTCCCGGATCAG 2447
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 2158 AGGAAACCACACTCTGTTGTTTTATTAGAAAACGTGGAAAAAGCTGATTTCCCGGATCAG 2217
Query 2448 ATGAGATTGTCTGAAGCTGTGAGTACGGGGAAAATCCGTGATTTGCATGGAAGAGTGATT 2507
|||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 2218 ATGAGATTGTCTGAAGCTGTGAGTACTGGGAAAATTCGTGATTCGCATGGAAGAGTGATC 2277
Query 2508 AGTATGAAAAATGTGATTGTTGTTGTGACGTCTGGGATTGCCAAGGATAATGCCACTGAC 2567
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2278 AGTATGAAAAATGTGATTGTTGTTGCGACGTCTGGGATTGCCAAGGATAATGCTACTGAC 2337
Query 2568 CATGTTATTAAACCTGTGAAGTTTCCTGAGGAGCAAGTTCTCAGCGCGAGAAGCTGGAAA 2627
||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 2338 CATGTTACTAAACCTGTGAAGTTTCCTGAGGATCAAGTTCTCAGTGGGAGAAGCTGGAAA 2397
Query 2628 CTGCAGATAAAGCTAGGAGATGCTACTAAATTTGGGGTAAATAAGAGAAAATATGAGCTA 2687
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2398 CTGCAGATAAAGCTAGGAGATGCTACTAAAATTGGGGTAAATAAGAGAAAACATGAGCTA 2457
Query 2688 GAAACAGCGCAACGTGCAGTGAAGGTGCAACGTTCATATCTGGATCTGAATCTTCCAGTG 2747
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2458 GAAACAGAGCAACGTGCAGTGAAGGTGCAACGTTCATATCTGGATCTGAACCTTCCAGTG 2517
Query 2748 AATGAAACAGAATTTAGCC-CTGATCATGAGGCAGAGGACAGGGACGCTTGGTTCGATGA 2806
|||||||||||| |||||| | ||||||||| |||| ||||| || |||||||||| ||
Sbjct 2518 AATGAAACAGAAGTTAGCCTC-GATCATGAGACAGAAGACAGTAACACTTGGTTCGAAGA 2576
Query 2807 ATTCATTGAAAAAGTAGATGGAAAAGTGACGTTCAAACCGGTTGATTTCGATGAGTTAGC 2866
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2577 TTTCATTGAACAAGTAGATGGAAAAGTGACGTTCAAACCGGTTGATTTCGATGGGTTAGC 2636
Query 2867 CAAGAACATTCAAGAGAAGATTGGTTCACATTTTGAGCGGTGCTTTGGATCCGAAACACA 2926
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2637 CAAGAACATTCAAGAGAAGATTGGTTTGCATTTTGAGCGGTGCTTTGGATCGGAAACACA 2696
Query 2927 TCTAGAACTTGATAAAGAAGTGATCCTTCAGATTCTGGCGGCTTCATGGTCATCATTATC 2986
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2697 TCTAGAGCTTGATAAAGAAGTGATCATTCAGATTCTGGCGGCTTCATGGTCATCATTATC 2756
Query 2987 ATCGGGCGAAGAAGAAGGGAGAACAATAGTTGATCAGTGGATGCAAACAGTTCTTGCTCG 3046
|||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||
Sbjct 2757 ATCGGGCGAAGAAGAAGGGAAAACA---GTTGATAAGTGGATGCAAACCGTTCTTGCTCC 2813
Query 3047 AAGCTTTGCTGAAGCAAAACAGAAGTACGGTTCGAATCCCATGTTGGGCGTGAAGCTGGT 3106
||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2814 AAGCTTTGCTGAAGCGAAACAGAAGTACGGTTTGAATCCCATGTTGGCCGTGAAGCTGGT 2873
Query 3107 TGCTTCTTCTAGCGGCTTAGCTTCCGGAGTAGAATTGCCGGCGAAGGTGGATGTGAT 3163
||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct 2874 TGCTTCTTCTAGCGGTTTAGCTTCCGGAATAGAGTTGCCGGCGAAGGTGGATGTGAT 2930
> Ahg481905 jgi|Araly1|481905|fgenesh2_kg.4__965__AT2G29970.1
Length=3374
Score = 230 bits (124), Expect = 7e-59
Identities = 363/475 (76%), Gaps = 30/475 (6%)
Strand=Plus/Plus
Query 2076 AAAGATTTCAAGTCTCTCAGAGAAATACTCTCTCGTAAAGTTGCCTGGCAGACCGAAGCT 2135
|||||||||||||||||||| ||| |||||||||| ||||| | | |||| ||||||
Sbjct 2084 AAAGATTTCAAGTCTCTCAGGGAATTACTCTCTCGAAAAGTCGGTTTTCAGAATGAAGCT 2143
Query 2136 GTAAATGCCATAAGCCAAATTATCTGCGGATGCA-AAACCGACTCCACGCGAAGAAA-C- 2192
|| |||||||| ||| |||| | || |||| || | | || |||| | ||||||| |
Sbjct 2144 GTGAATGCCATTAGCGAAATCGTTTGTGGATACAGAGA-TGAGTCCAGGAGAAGAAACCA 2202
Query 2193 CA-AGCAA--GC--GGAA--TTTGGCTGGCTCTTCTTGGACCCGATAAAGTGGGGAAGAA 2245
|| ||||| | | || ||||||| |||||||||||||| ||||||| ||||||||
Sbjct 2203 CATAGCAACCACAAGTAATGTTTGGCTTGCTCTTCTTGGACCTGATAAAGCCGGGAAGAA 2262
Query 2246 GAAAGTGGCGATGA-CTCTTTCTGAAGTCTTCTTTGGTGGTAAAGTCAA-TTACATATGT 2303
|||||| || || | ||||| | |||||||||| || || ||| ||| || ||| |||
Sbjct 2263 GAAAGTAGC-ATCAGCTCTTGCCGAAGTCTTCTGCGGGGGCCAAGACAACTT-CATCTGT 2320
Query 2304 GTAGATTTTGGGGCAGAGCATTGTTCCCTTGATGACAAATTCAGAGGCAAAACAGTGGTG 2363
|| ||||| | || || | | | ||||| || | ||||||||| |||||||| ||
Sbjct 2321 GTGGATTTCAAGTCACAGGACAG-T--CTTGACGATAGATTCAGAGGAAAAACAGTTGTT 2377
Query 2364 GATTAC---G-TAACCGGTGAGTTATCTAGGAAACCACACTCTGTTGTTTTAC-TCGAAA 2418
|||||| | ||| | | || | | ||| | | ||||||||||| | ||||||
Sbjct 2378 GATTACATTGCTAA-C-G-AAG-TGGCGAGGCGGGCGGATTCTGTTGTTTT-CATCGAAA 2432
Query 2419 ACGTGGAAAAAGCTGAGTTCCCGGATCAGATGAGATTGTCTGAAGCTGTGAGTACGGGGA 2478
|||||||||||||||||||||| ||||| || ||||||||||| ||| | || || || |
Sbjct 2433 ACGTGGAAAAAGCTGAGTTCCCTGATCAAATCAGATTGTCTGATGCTATTAGAACTGG-A 2491
Query 2479 AAA-TCCGTGATTTGCATGGAAGAGTGATTAGTATGAAAAATGTGATTGTTGTTG 2532
||| |||| || | |||||| |||| ||| |||||||||||||| || |||||||
Sbjct 2492 AAACTCCGGGACTCGCATGGGAGAGAGATCAGTATGAAAAATGTTATAGTTGTTG 2546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131565029861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5