BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07210.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919445 jgi|Araly1|919445|scaffold_100726.1 1286 0.0
> Ahg919445 jgi|Araly1|919445|scaffold_100726.1
Length=826
Score = 1286 bits (696), Expect = 0.0
Identities = 784/827 (95%), Gaps = 3/827 (0%)
Strand=Plus/Plus
Query 78 AAAACCCTAAGTTTCAG-AAGATGAGCATCGCTCGTTTCGCTACTCGGTCACTCAACAAC 136
||||||||||||||| | |||||||| |||||||||||||||||||| || |||||| ||
Sbjct 1 AAAACCCTAAGTTTC-GAAAGATGAGAATCGCTCGTTTCGCTACTCGTTCCCTCAACGAC 59
Query 137 GTAACTTTCCTTCGACCATTTCGTCCCATCGTCTCTAGAAGCCTCGCCACCAACGCCAAC 196
||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 60 GTAGCGTTCCTCCGACCATTTCGTTCCATCGTCTCTAGAAGCCTCGCCACCAACGCTAAC 119
Query 197 GAAGATCCAAACCAGAATCGATCTTCTTTTGACTCATCGGACAATTTGGATTCGTTGTTT 256
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 120 GAAGATCCAAACCAGATTCGATCTTCTTTTGACTCATCGGACAATCTCGATTCGTTGTTT 179
Query 257 GGCGATTACACTGGCAACGATGAGAAAAGCAATGATTTCTTCCAGCATCTTAGTAAAGCG 316
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 180 GGCGATTACAATGGCAACGATGAGAAAAGCAGTGGTTTCTTCCAGCATCTTAGTAAAGCG 239
Query 317 GAGAAAGATAAGCGCGATTTCAATGGCTATAATAGATCAGGAGGGTCGAGATACTCCGGT 376
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 GAGAAAGATAAGCGCGACTTCAATGGCTATAATAGATCAGGAGGGTCGAGATATTCCGGT 299
Query 377 GGTGGTTCAATGAGCAAAGACGAGACCTTCGATCCTTCATCTGATGGTGTTGATGGAAAA 436
||||||||||||| ||| ||||||| ||| ||||||||||||||||| |||||||| |||
Sbjct 300 GGTGGTTCAATGAACAAGGACGAGAGCTTTGATCCTTCATCTGATGGCGTTGATGGGAAA 359
Query 437 TTGAAAGAAGCTGCACTAGCTTACAATATGGATGAAGGAGATGGCTTTAAGGAGTACTCT 496
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 360 TTGAAAGAAGCTGCACTATTTTACAATATGGATGAAGGAGATGGCTTGAAGGAGTACTCG 419
Query 497 TTTAGGCCCGATTTCAACAACAGTTGGGGCATGAATAACTTCCCTAGGATGCAAAAACAG 556
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 420 TTTAGGCCCGATTTCAACAACAGTTGGGGCATTAATAACTTTCCTAGGATGCAGAAACAG 479
Query 557 ATGCAAAATCCTAGACAGAATAATAGCAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 616
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 ATGCAAAATCCTAGACAGAATAATAACAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 539
Query 617 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAACTTCATCACTGAAGCTGGGATCATT 676
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 540 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAAGTTCATTACCGAAGCTGGGATCATC 599
Query 677 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCTCAAAGAAAGATTGCTAGAGAGATC 736
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCACAAAGAAAGATTGCTAGAGAGATC 659
Query 737 AAAACAGCCCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 796
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAACGGCTCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 719
Query 797 TTCGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 856
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 779
Query 857 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAG-TTTGGAGCGGG 902
||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 780 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAGGTTTGGATCGGG 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5