BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07210.1 Length=1197 Score E Sequences producing significant alignments: (Bits) Value Ahg919445 jgi|Araly1|919445|scaffold_100726.1 1286 0.0 > Ahg919445 jgi|Araly1|919445|scaffold_100726.1 Length=826 Score = 1286 bits (696), Expect = 0.0 Identities = 784/827 (95%), Gaps = 3/827 (0%) Strand=Plus/Plus Query 78 AAAACCCTAAGTTTCAG-AAGATGAGCATCGCTCGTTTCGCTACTCGGTCACTCAACAAC 136 ||||||||||||||| | |||||||| |||||||||||||||||||| || |||||| || Sbjct 1 AAAACCCTAAGTTTC-GAAAGATGAGAATCGCTCGTTTCGCTACTCGTTCCCTCAACGAC 59 Query 137 GTAACTTTCCTTCGACCATTTCGTCCCATCGTCTCTAGAAGCCTCGCCACCAACGCCAAC 196 ||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 60 GTAGCGTTCCTCCGACCATTTCGTTCCATCGTCTCTAGAAGCCTCGCCACCAACGCTAAC 119 Query 197 GAAGATCCAAACCAGAATCGATCTTCTTTTGACTCATCGGACAATTTGGATTCGTTGTTT 256 |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| Sbjct 120 GAAGATCCAAACCAGATTCGATCTTCTTTTGACTCATCGGACAATCTCGATTCGTTGTTT 179 Query 257 GGCGATTACACTGGCAACGATGAGAAAAGCAATGATTTCTTCCAGCATCTTAGTAAAGCG 316 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 180 GGCGATTACAATGGCAACGATGAGAAAAGCAGTGGTTTCTTCCAGCATCTTAGTAAAGCG 239 Query 317 GAGAAAGATAAGCGCGATTTCAATGGCTATAATAGATCAGGAGGGTCGAGATACTCCGGT 376 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 240 GAGAAAGATAAGCGCGACTTCAATGGCTATAATAGATCAGGAGGGTCGAGATATTCCGGT 299 Query 377 GGTGGTTCAATGAGCAAAGACGAGACCTTCGATCCTTCATCTGATGGTGTTGATGGAAAA 436 ||||||||||||| ||| ||||||| ||| ||||||||||||||||| |||||||| ||| Sbjct 300 GGTGGTTCAATGAACAAGGACGAGAGCTTTGATCCTTCATCTGATGGCGTTGATGGGAAA 359 Query 437 TTGAAAGAAGCTGCACTAGCTTACAATATGGATGAAGGAGATGGCTTTAAGGAGTACTCT 496 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 360 TTGAAAGAAGCTGCACTATTTTACAATATGGATGAAGGAGATGGCTTGAAGGAGTACTCG 419 Query 497 TTTAGGCCCGATTTCAACAACAGTTGGGGCATGAATAACTTCCCTAGGATGCAAAAACAG 556 |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 420 TTTAGGCCCGATTTCAACAACAGTTGGGGCATTAATAACTTTCCTAGGATGCAGAAACAG 479 Query 557 ATGCAAAATCCTAGACAGAATAATAGCAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 616 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 480 ATGCAAAATCCTAGACAGAATAATAACAAGTCTGAGGTAACTACTGAGGAAGTTCTGAAG 539 Query 617 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAACTTCATCACTGAAGCTGGGATCATT 676 ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| Sbjct 540 AATGCTGATTTCAGGAATGTTAGGTTCCTTGCAAAGTTCATTACCGAAGCTGGGATCATC 599 Query 677 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCTCAAAGAAAGATTGCTAGAGAGATC 736 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 600 ATTAAGAGGAAGCAGACTGGCATTAGCGCAAAGGCACAAAGAAAGATTGCTAGAGAGATC 659 Query 737 AAAACAGCCCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 796 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AAAACGGCTCGTGCATTTGGGCTGATGCCTTTCACAACAATGGGTACAAAGGCATTTCAG 719 Query 797 TTCGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 856 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTTGGGAAAACCATGGAGAACAGAGACCAAGATTTCGAGTATGAAGTGCTTGATGATGAT 779 Query 857 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAG-TTTGGAGCGGG 902 ||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 780 GATGAGTTTGACGAGGGAAATGCTTGAATCTGAAGGTTTGGATCGGG 826 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44680058724 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5