BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07220.1
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919446 jgi|Araly1|919446|scaffold_100727.1 2481 0.0
> Ahg919446 jgi|Araly1|919446|scaffold_100727.1
Length=1567
Score = 2481 bits (1343), Expect = 0.0
Identities = 1494/1567 (95%), Gaps = 9/1567 (1%)
Strand=Plus/Plus
Query 77 aagaaaaagaagagaaaaaaTGGGTCTTCGTCTCCGTCTTCGTC-TCC-C-TCACAAAAG 133
||||||||| |||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 2 AAGAAAAAGCAGAGAAAAAATGGGTCTTCGTCTCCGTCTTCGTCTTCCTCACCACAAAAG 61
Query 134 CTCTCCTCGttcaccttcctatctccttctctgtgttcttgctctatccttcttctcctt 193
|||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 62 CTCTCCTCGTACACCTTCTTATCTCCTTCTATGTGTTCTTGCTCTCTCCTTCTTCTCCTT 121
Query 194 caccgctcttctt-ttctACAAGGTTGACGACTTTATAGCTCAGACAAAAACTCTGGCCG 252
| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 122 CTCCGCTCTTCTTCTT-TACAAGGTTGACGACTTTATAGCTCAGACAAAAACTTTGGCCG 180
Query 253 GACATAACTTGGAACCAACACCGTGGCATATCTTCCCACGCAAATCTTTCAGCGCAGCTA 312
||||||||||||| |||||||||||||| |||||||| |||||||||||||||| || ||
Sbjct 181 GACATAACTTGGACCCAACACCGTGGCACATCTTCCCTCGCAAATCTTTCAGCGAAGGTA 240
Query 313 CGAAACATTCTCAGGCTTACCGAATCCTCCAGTGCTCCTACTTCTCATGTCCGTACAAAG 372
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CAAAACATTCTCAGGCTTACCGAATCCTCCAGTGCTCCTACTTCTCATGTCCGTACAACG 300
Query 373 CCGTCGTCCAACCAAAGAGTCTCCACTCGGAATCTGGGTCGGGTCGTCAAACCCATCAAC 432
|||| |||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 301 CCGTTGTCCAACCGAAGAGTCTCCAGTCGGAATCTGTGTCGGGTCGTCGAACCCATCAAC 360
Query 433 CACAATGCCCAGACTTCTTCAGGTGGATTCACCGGGATTTAGAGCCGTGGGCAAAGACTG 492
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 CACAATGCCCAGACTTCTTCAGGTGGATTCACCGGGATTTAGAGCCATGGGCAAAGACTG 420
Query 493 GGGTGACTAAAGAGCACGTGAAGAGGGCAAAAGCGAATGCTGCGTTTCGAGTGGTGATAC 552
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 GGGTCACTAAAGAGCACGTGAAGAGGGCGAAAGCGAATGCTGCGTTTCGAGTGGTGATAC 480
Query 553 TATCAGGGAAGTTATACGTGGATCTCTATTACGCATGTGTGCAGAGCAGAATGATGTTCA 612
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TATCAGGGAAGTTGTATGTGGATCTCTATTACGCGTGTGTGCAGAGCAGAATGATGTTCA 540
Query 613 CCATTTGGGGGATTCTGCAACTGCTCACCAAGTATCCAGGGATGGTTCCTGATGTCGACA 672
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 541 CCATTTGGGGGATTCTGCAACTGCTCAACAAGTATCCTGGGATGGTTCCTGATGTCGACA 600
Query 673 TGATGTTTGATTGTATGGACAAACCCATCATCAACCAGACCGAGTACCAGTCCTTTCCTG 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 TGATGTTTGATTGTATGGACAAACCCATCATCAACCAGACCGAGTACCAGTCCTTTCCCG 660
Query 733 TTCCGCTTTTTCGATATTGCACCAACGAAGCTCATTTGGACATTCCTTTTCCGGATTGGT 792
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 TTCCCCTTTTTCGATATTGCACCAATGAAGCTCATTTGGACATTCCTTTTCCGGATTGGT 720
Query 793 CGTTTTGGGGATGGTCGGAGACAAATCTAAGGCCCTGGGAAGAAGAGTTTGGGGATATAA 852
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 CGTTTTGGGGTTGGTCGGAGACAAACCTAAGGCCCTGGGAAGAAGAGTTTGGGGATATAA 780
Query 853 AGCAAGGGTCTAGGAGAAGAAGTTGGTACAACAAGCAACCTAGAGCTTACTGGAAAGGCA 912
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AGCAAGGGTCTAGGAGAAGAAGTTGGGACAACAAGCAACCTAGAGCTTACTGGAAAGGCA 840
Query 913 ATCCCGATGTTGTATCGCCTATACGACTGGAGCTCATGAAATGCAACCATTCAAGGTTAT 972
||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||
Sbjct 841 ATCCCGATGTTGTATCGCCTATAAGATTGGAGCTCATGAAATGTAACCATTCACGGTTAT 900
Query 973 GGGGAGCACAGATTATGCGCCAGGACTGGGCAGAAGAAGCAAAAGGTGGGTTTGAGCAAT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGGGAGCACAGATTATGCGCCAGGACTGGGCAGAAGAAGCAAAAGGTGGGTTTGAGCAAT 960
Query 1033 CCAAGCTTTCCAACCAATGCAATCACCGGTACAAAATCTATGCAGAAGGTTATGCGTGGT 1092
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 961 CCAAGCTTTCCAACCAATGCAATCACCGGTACAAAATATATGCAGAGGGTTATGCGTGGT 1020
Query 1093 CAGTTTCTCTAAAGTATATCTTATCATGTGGTTCCATGACACTCATAATATCACCTGAGT 1152
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 CAGTTTCTCTAAAGTATATCCTATCATGTGGTTCCATGACACTCATAATCTCACCTGAGT 1080
Query 1153 ATGAAGATTTCTTCAGTAGAGGCCTCCTTCCCAAGGAAAATTACTGGCCTATCTCTCCCA 1212
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 ATGAAGATTTCTTCAGCAGAGGCCTCCTTCCCAAGGAAAACTACTGGCCTATCTCTCCCA 1140
Query 1213 CTGATCTATGTCGGTCCATCAAATACGCTGTTGATTGGGGAAATTCCAACCCCTCTGAAG 1272
|||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||
Sbjct 1141 CTGATCTATGTCGGTCCATCAAATACGCTGTTGACTGGGGCAATGCCAACCCCTCTCAAG 1200
Query 1273 CTGAAACAATTGGAAAAAGAGGACAGGGTTATATGGAAAGCCTTAGCATGAACCGGGTTT 1332
||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 1201 CTGAAACAATTGGAAAAAGAGGACAAGGTTATATGGAAAGCATTAGCATGGACCGGGTTT 1260
Query 1333 ATGACTATATGTTTCATCTCATCACTGAGTACTCGAAACTTCAGAAGTTCAAGCCAGAGA 1392
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1261 ATGACTATATGTTTCATCTCATCACTGAGTACTCGAAGCTTCAGAAGTTTAAGCCAGAGA 1320
Query 1393 AGCCGGCTTCCGCTAATGAAGTCTGTGCAGGATCATTGCTCTGCATT-GCAGAACAAAAA 1451
|||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1321 AGCCGGCTTCGGCTAATGAAGTCTGTGCAGGATCATTGCTCTGC-TTCGCAGAACAAAAA 1379
Query 1452 GAGCGGGAACTACTCGAAAGATCCAGAGTCGTACCTTCTCTGGATCAACCATGTAAATTT 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1380 GAGCGGGAACTACTCGAAAGATCCAGAGTCGTACCTTCTCTGGATCAACCATGTAAACTT 1439
Query 1512 CCAGTAGAAGATAGGAATAGGCTTGAGTGGTTGATCCAACAGAAGAATAAAACAATCGAA 1571
||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1440 CCAGTAGCAGATAGGAGTAGGCTTGAGAGGTTGATCCAACAGAAGAAGAAAACAATCGAA 1499
Query 1572 AATGTTAGATACATGGAGATGACAAGAACACAGAGGGGTTCTAAATGAATTGTCTTTT-T 1630
|||||||||||||||||||||||||||||| | | | |||| |||||||||||||||| |
Sbjct 1500 AATGTTAGATACATGGAGATGACAAGAACAAAAAAGAGTTCCAAATGAATTGTCTTTTCT 1559
Query 1631 AGGGACA 1637
||| |||
Sbjct 1560 AGG-ACA 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66315116545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5