BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07230.1
Length=2062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919447 jgi|Araly1|919447|scaffold_100728.1 1633 0.0
> Ahg919447 jgi|Araly1|919447|scaffold_100728.1
Length=1588
Score = 1633 bits (884), Expect = 0.0
Identities = 1011/1071 (94%), Gaps = 13/1071 (1%)
Strand=Plus/Plus
Query 184 GGGTCTAAGGTCACCGGAAAAATGGCTTTCCGGCGAGTGTTAACCACTGTAATCCTCTTC 243
||||||||||||||||| ||||||||||||||| ||| | |||||||||||| ||||||
Sbjct 1 GGGTCTAAGGTCACCGG-GAAATGGCTTTCCGGCAAGTATCAACCACTGTAATTCTCTTC 59
Query 244 TGCTACTTACTAATTTCATCTCAATC-CATTGAATTCAAAAACTCCCAGAAACCCCACAA 302
|||||||||||||||||||||||||| | | |||||| || | |||||||||||
Sbjct 60 TGCTACTTACTAATTTCATCTCAATCTC-TAGAATTC---AA-----A-AAACCCCACAA 109
Query 303 GATCCAAGGACCAATCAAGACTATAGTCGTTGTAGTCATGGAGAATCGCTCCTTCGATCA 362
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 110 GATCGAAGGACCAATCAAGACTATAGTCGTTGTAGTCATGGAGAATCGCTCTTTCGATCA 169
Query 363 CATCCTCGGTTGGCTCAAATCGACCCGACCCGAAATCGACGGATTAACCGGCAAAGAGTC 422
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 170 CATCCTCGGTTGGCTCAAATCCACCCGACCCGAAATCGACGGATTAACCGGCAAAGAGTC 229
Query 423 AAATCCCCTCAACGTCTCCGATCCAAATTCCAAAAAGATCTTCGTCTCAGACGACGCCGT 482
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 230 AAATCCACTCAACGTCTCCGATCCAAATTCCGAAAAGATCTTCGTCTCCGACGACGCCGT 289
Query 483 CTTCGTAGACATGGATCCGGGTCACTCATTCCAAGCGATCCGAGAACAGATATTCGGGTC 542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 290 CTTCGTAGACATGGATCCGGGTCATTCATTCCAAGCGATCCGAGAACAGATATTCGGGTC 349
Query 543 TAACGATACATCCGGCGACCCGAAAATGAACGGATTCGCACAGCAATCAGAGAGTATGGA 602
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 350 GAACGATACATCCGGCGACCCGATGATGAACGGATTCGCACAGCAATCGGAGAGCATGGA 409
Query 603 GCCTGGAATGGCTAAGAACGTTATGAGCGGGTTCAAACCCGAAGTCTTACCGGTTTACAC 662
|||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||
Sbjct 410 GCCTGGCATGGCTAAGAACGTGATGAGCGGATTCAAGCCCGAAGTCTTACCTGTTTACAC 469
Query 663 CGAGTTAGCGAACGAGTTCGGAGTTTTCGATCGATGGTTCGCTTCAGTACCAACTTCGAC 722
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 470 CGAGTTAGCGAACGAGTTCGGAGTTTTCGATCGCTGGTTCGCGTCAGTACCGACTTCGAC 529
Query 723 TCAACCGAATCGGTTCTACGTTCACTCAGCTACTTCTCATGGATGCTCAAGCAACGTGAA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TCAACCGAATCGGTTCTACGTTCACTCAGCTACTTCTCATGGATGCTCAAGCAACGTGAA 589
Query 783 GAAAGATCTCGTTAAAGGGTTTCCTCAAAAGACGATCTTTGATTCGTTAGATGAGAACGG 842
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 590 GAAAGATCTCGTTAGAGGGTTTCCTCAAAAGACGATCTTTGATTCGTTAGAAGAGAACGG 649
Query 843 ACTCAGTTTTGGGATTTATTACCAAAACATCCCTGCGACGTTCTTCTTCAAGTCTCTTCG 902
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 650 ACTCAGTTTTGGGATTTATTACCAAAACATCCCTGCTACGTTCTTCTTCAAATCTCTTCG 709
Query 903 TAGGCTTAAGCATTTGGTGAAATTCCATAGCTATGCACTTAAGTTCAAGCTCGACGCTAA 962
||||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 710 TAGGCTTAAACATTTGGTCAAATTTCATAGCTATGCGCTTAAGTTCAAGCTTGACGCTAA 769
Query 963 GCTTGGGAAGCTTCCGAATTATTCTGTCGTGGAACAGAGATATTTCGATATCGATCTTTT 1022
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 770 GCTTGGGAAGCTTCCGAATTACTCTGTTGTGGAACAGAGATATTTCGATATCGATCTTTT 829
Query 1023 TCCGGCTAATGATGATCATCCGTCGCATGACGTGGCGGCGGGTCAACGGTTTGTTAAGGA 1082
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 830 TCCGGCTAATGATGATCATCCGTCGCATGACGTGGCGGCGGGTCAACGTTTTGTTAAGGA 889
Query 1083 AGTTTATGAGACGTTACGGAGTAGTCCACAGTGGAAAGAGATGGCTTTGCTCATTACTTA 1142
||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 890 AGTCTATGAGACGTTACGGAGCAGCCCACAGTGGAAAGAGATGGCTTTGCTCATAACTTA 949
Query 1143 TGATGAGCACGGTGGGTTTTATGACCATGTTCCCACGCCGGTTAAAGGTGTGCCTAACCC 1202
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 950 TGATGAACACGGTGGGTTTTATGACCATGTTCCGACGCCGGTTAAAGGTGTGCCTAACCC 1009
Query 1203 TGATGGTATCATTGGACCTGATCCGTTTTACTTTGGGTTTGACCGATTGGG 1253
|||||| |||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 1010 TGATGGAATCATTGGACCT-ACCCGTTTTACTTCGGGTTTGACCGATTGGG 1059
Score = 874 bits (473), Expect = 0.0
Identities = 504/519 (97%), Gaps = 2/519 (0%)
Strand=Plus/Plus
Query 1296 GGGCACTGTGATACATGAACCTGAAGGTCCAACACCACATTCACAATTTGAGCATTCTTC 1355
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1058 GGGCACTGTGATACATGAACCTGATGGTCCAACACCACATTCACAGTTTGAGCATTCTTC 1117
Query 1356 TAT-CCCTGCAACGGTGAAGAAACTCTTCAACCTAAAGTCTCACTTCCTTACAAAGAGAG 1414
||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1118 TATACCC-GCAACGGTGAAGAAACTCTTCAACCTAAAGTCTCACTTCCTGACCAAGAGAG 1176
Query 1415 ATGCATGGGCTGGTACATTTGAGAAATACTTCCGTATCCGAGATTCTCCTCGCCAAGATT 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 ATGCATGGGCTGGTACATTTGAGAAATACTTCCGTATCCGAGATTCTCCTCGCCAAGATT 1236
Query 1475 GTCCAGAGAAACTGCCGGAAGTGAAACTATCGCTGAGGCCATGGGGAGCAAAAGAAGACT 1534
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1237 GTCCAGAGAAACTGCCGGAAGTGAAACTATCCCTGAGGCCATGGGGAGCAAGAGAAGACT 1296
Query 1535 CAAAGCTCTCAGAATTCCAGGTGGAGCTGATCCAACTGGCCTCTCAACTCGTTGGAGACC 1594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1297 CAAAGCTCTCAGAATTCCAGGTGGAGCTGATCCAACTGGCCTCTCAACTTGTTGGAGACC 1356
Query 1595 ATCTCCTAAACTCATATCCAGACATTGGGAAGAACATGACAGTAAGTGAAGGCAACAAAT 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 ATCTCCTAAACTCATATCCAGACATTGGGAAGAACATGACAGTAAGTGAAGGCAACAAAT 1416
Query 1655 ACGCAGAAGACGCTGTTCAGAAGTTTCTGGAAGCAGGGATGGCTGCACTGGAAGCAGGAG 1714
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1417 ACGCAGAGGACGCTGTTCAGAAGTTTCTGGAAGCAGGGATGGCTGCACTTGAAGCAGGAG 1476
Query 1715 CAGACGAAAACACTATAGTCACTATGAGGCCGTCTCTGACAACCAGGACCAGTCCCAGTG 1774
||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 1477 CAGACGAAAACACTATAGTCACTATGAGGCCATCTCTGACGACCAGGACCAATCCCAGTG 1536
Query 1775 AAGGGACCAACAAGTATATTGGAAGCTACTGAAATCTAT 1813
|||||| ||||||||||||||||||||||||||||||||
Sbjct 1537 AAGGGATCAACAAGTATATTGGAAGCTACTGAAATCTAT 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77551738820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5