BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07240.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470742 jgi|Araly1|470742|fgenesh2_kg.1__696__AT1G07240.1 2119 0.0
> Ahg470742 jgi|Araly1|470742|fgenesh2_kg.1__696__AT1G07240.1
Length=1509
Score = 2119 bits (1147), Expect = 0.0
Identities = 1363/1467 (93%), Gaps = 16/1467 (1%)
Strand=Plus/Plus
Query 180 AAGaaaaaaaaGTAAAGAGATGAAGACAGCAGAGCTCATATTCGTTCCTCTGCCGGAGAC 239
|||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 54 AAGAGAAAAAAGTATAGAGATGAAGAAAGCAGAGCTCATATTCGTTCCTCTGCCGGAGAC 113
Query 240 CGGCCATCTCTTGTCAACGATCGAGTTTGGAAAGCGTCTACTCAATCTAGACCGTCGGAT 299
||||||||| ||||| ||||||||||| ||||||||||| |||| |||||||||| ||||
Sbjct 114 CGGCCATCTTTTGTCCACGATCGAGTTCGGAAAGCGTCTGCTCATTCTAGACCGTAGGAT 173
Query 300 TTCTATGATTACAATCCTCTCCATGAATCTTCCTTACGCTCCTCACGCCGACGCTTCTCT 359
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 174 TTCCATGATTACAATCCTATCCATGAATCTCCCTTACGCTCCTCACGCCGACGCTTCTCT 233
Query 360 TGCTTCGCTAACAGCCTCCGAGCCTGGTATCCGAATCATCAGTCTCCCGGAGATCCACGA 419
||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 234 TGCTTCGCTCACAGCCTCCGAGCCTGGAATCCGACTCATCAGTCTCCCGGAGATCCACGA 293
Query 420 TCCACCTCCGATCAAGCTTCTTGACACTTCCTCCGAGACTTACATCCTCGATTTCATCCA 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 294 TCCACCTCCGATTAAGCTTCTTGACACTTCCTCCGAGACTTACATCCTCGATTTCGTCGA 353
Query 480 TAAAAACATACCTTGTCTCAGAAAAACCATCCAAGATTTAGTCTCATCATCATCATCTTC 539
| |||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 354 TCAAAACATACCATGTCTTAGAAAAACCATCCAAGATTTAG--TC-TCATCATCATCTTC 410
Query 540 CGGAGGTGGTAGTAGTCATGTCGCCGGCTTGATTCTTGATTTCTTCTGCGT-TGGTTTGA 598
||||| |||| | ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 411 CGGAGATGGT--T-GTCATGTCGCCGGCTTGATTCTTGATTTCTTCTGCGTCT-CTTTGA 466
Query 599 TCGACATCGGCCGTGAGGTAAACCTTCCTTCCTATATCTTCATGACTTCCAACTTTGGTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 467 TCGACATCGGCCGTGAGGTAAACCTTCCTTCCTATATCTTCATGACTTCCAACTTCGGTT 526
Query 659 TCTTAGGGGTTCTACAGTATCTCCCGGAACGACAACGTTTGACTCCGTCGGAGTTCGATG 718
|||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||
Sbjct 527 TCTTAGGGGTTCTACAGTATCTCCCGCAACGACATCGTTTTACTGCGTCGGAGTTCGATG 586
Query 719 AGAGCTCCGGC--GAGGAAGAGTTACAT-ATTCCGGCGTTTGTGAACCGTGTTCCCGCCA 775
|||||||| || || |||||||||| | ||||||||||| || | ||||||||||||||
Sbjct 587 AGAGCTCC-GCTGGA-GAAGAGTTAC-TGATTCCGGCGTTCGTTAGCCGTGTTCCCGCCA 643
Query 776 AGGTTCTGCCGCCAGGTGTGTTCGATAAACTCTCTTACGGGTCTCTGGTCAAAATCGGCG 835
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 644 AGGTTCTGCCGCCTGGTGTGTTCGATAAACTCTCTTACGGGTCTCTGGTCAAAATTGGCG 703
Query 836 AGCGATTACATGAAGCCAAGGGTATTTTGGTTAATTCATTTACCCAAGTGGAGCCTTATG 895
||||| ||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 704 AGCGACTACATGAAGCCAAGGGTATTTTGGTCAATTCCTTTACCGAAGTCGAGCCTTATG 763
Query 896 CTGCTGAACATTTTTCTCAAGGACGAGATTACCCTCACGTGTATCCTGTTGGGCCGGTTC 955
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CTGCTGCACATTTTTCTCCAGGACGAGATTACCCTCACGTGTATCCTGTTGGGCCGGTTC 823
Query 956 TCAACTTAACGGGCCGTACAAATCCGGGTCTAGCTTCGGCCCAATATAAAGAGATGATGA 1015
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 824 TCAACTTAACGGGCCGTACAAATCCGGGTCTAGCTTCGGCCCAATACGAAGAGATGATGA 883
Query 1016 AGTGGCTTGACGAGCAACCAGACTCGTCGGTTTTGTTCCTGTGTTTCGGGAGCATGGGAG 1075
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AATGGCTTGACGAGCAACCAGACTCGTCGGTTTTGTTCCTGTGTTTCGGGAGCATGGGAG 943
Query 1076 TCTTCCCTGCACCTCAGATCACAGAGATTGCTCACGCGCTCGAGCTTATCGGGTGCAGGT 1135
|| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |
Sbjct 944 TCCTCCCTGCACCTCAGATTACAGAGATAGCTCACGCGCTCGAGCACATCGGGTGCAGAT 1003
Query 1136 TCATCTGGGCGATCCGTACGAACATGGCGGGAGATGGCGATCCTCAGGAGCCGCTTCCAG 1195
|||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 1004 TCATCTGGGCGATCCGTACGAATATGGCCGGAGACGGCGATCCTCATGAGCCGCTTCCAG 1063
Query 1196 AAGGATTTGTCGATCGAACAATGGGCCGTGGAATTGTGTGTAGTTGGGCTCCACAAGTGG 1255
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AAGGATTCGTCCATCGAACAATGGGCCGTGGAATTGTGTGTAGTTGGGCTCCACAAGTGG 1123
Query 1256 ATATCTTGGCCCACAAGGCAACAGGTGGATTCGTTTCTCACTGCGGGTGGAATTCCGTCC 1315
|||||||||||||||||||| |||||||||| || |||||||| ||||||||||| || |
Sbjct 1124 ATATCTTGGCCCACAAGGCAGCAGGTGGATTTGTATCTCACTGTGGGTGGAATTCTGTAC 1183
Query 1316 AAGAGAGTCTATGGTACGGTGTACCTATTGCAACGTGGCCAATGTATGCGGAGCAACAAC 1375
| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 1184 AGGAGAGTCTGTGGTACGGCGTACCAATTGCCACGTGGCCGATGTATGCGGAGCAACAGC 1243
Query 1376 TGAACGCATTTGAGATGGTGAAGGAGTTGGGCTTAGCAGTGGAGATAAGGCTTGACTACG 1435
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||
Sbjct 1244 TGAACGCATTTGAGATGGTGAAGGAGCTGGACTTAGCCGTGGAGATAAGGCTTGATTACG 1303
Query 1436 TGGCGGATGGTGATAGGGTTACTTTGGAGATCGTGTCAGCCGATGAAATAGCCACAGCCG 1495
|||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 1304 TGGCTGATGGTGATAGGGTTACTTTGGAGATTGTATCAGCCGATGAAATAGCCATAGCCG 1363
Query 1496 TCCGATCATTGATGGATAGTGATAACCCCGTGAGAAAGAAGGTTATAGAAAAATCTTCAG 1555
|||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct 1364 TCCGATCATTGATGGATAGTGATAACCCTGTGAGAAAGAAGGTTAAAGAGATATCAGCAG 1423
Query 1556 TGGCGAGGAAAGCTGTTGGTGATGGTGGGTCTTCTACGGTGGCCACATGTAA-TTTTATC 1614
||| ||||||||||||||||||||||| ||||||| |||||||||| | || |||||||
Sbjct 1424 AGGCAAGGAAAGCTGTTGGTGATGGTGGATCTTCTATGGTGGCCACAGG-AACTTTTATC 1482
Query 1615 AAAGATATTCTTGGGGATCACTTTTGA 1641
| |||||||||||||||||||||||||
Sbjct 1483 AGAGATATTCTTGGGGATCACTTTTGA 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66124665320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5