BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07250.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919449 jgi|Araly1|919449|scaffold_100730.1 2204 0.0
> Ahg919449 jgi|Araly1|919449|scaffold_100730.1
Length=1483
Score = 2204 bits (1193), Expect = 0.0
Identities = 1378/1470 (94%), Gaps = 2/1470 (0%)
Strand=Plus/Plus
Query 57 AAGAGAGATGGTGAAGGAAACAGAGCTAATCTTCATTCCAGTTCCATCCACAGGTCATAT 116
||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 14 AAGAGAGATGGAGAAGGAAACAGAGCTCATCTTCGTTCCAGTTCCATCCACAGGTCATAT 73
Query 117 TCTCGTCCATATTGAATTCGCCAAGCGTCTCATCAATCTCGACCATCGGATCCACACCAT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 74 TCTCGTCCATATTGAATTCGCCAAGCGTCTCATCAATCTCGACCATCGGATCCACACAAT 133
Query 177 CACTATTCTCAACTTATCCTCACCCTCTTCTCCTCACGCCTCCGTCTTCGCCAGATCTCT 236
|||||| |||||||| || ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 134 CACTATCCTCAACTTGTCTTCACCCTCTGCTCCTGACGCCTCCGTCTTCGCCAGATCTCT 193
Query 237 CATCGCTTCCCAGCCCAAAATCCGTCTCCACGACCTTCCCCCTATCCAAGATCCTCCTCC 296
||||||||| ||||||| ||| |||||||| ||||||||| ||| |||||||||||||||
Sbjct 194 CATCGCTTCACAGCCCAGAATACGTCTCCATGACCTTCCCTCTACCCAAGATCCTCCTCC 253
Query 297 ATTCGATCTTTACCAAAGAGCTCCCGAAGCTTACATAGTAAAACTCATCAAGAAAAATAC 356
||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 254 ATTTGATCTCTACCAAAGAGCTCCGGAAGCTTACATAGTAAAGCTCATCAAGAAAACTAC 313
Query 357 TCCTCTGATAAAAGACGCCGTCTCCAGCATCGTCGCGTCGCGTCGTGGAGGCTCAGATTC 416
||||||||| ||||||||||||||||||||||||| |||||||||| |||| ||||||||
Sbjct 314 TCCTCTGATCAAAGACGCCGTCTCCAGCATCGTCGAGTCGCGTCGTCGAGGATCAGATTC 373
Query 417 GGTTCAAGTCGCCGGTTTGGTTCTCGATTTATTCTGCAATTCATTGGTAAAAGATGTTGG 476
||||| |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||
Sbjct 374 GGTTCGAGTCGCCGGTCTGGTTCTCGATTTATTTTGCAATTCATTGATAAATGATGTTGG 433
Query 477 CAACGAGCTTAATCTTCCTTCTTACATATACCTTACGTGTAACGCTAGATACTTGGGGAT 536
||||||||| ||||||||||| ||||||| ||| ||||||||||||||||| ||||||||
Sbjct 434 CAACGAGCTGAATCTTCCTTCCTACATATTCCTCACGTGTAACGCTAGATATTTGGGGAT 493
Query 537 GATGAAATATATTCCGGATCGGCATCGGAAAATCGCATCTGAGTTCGATTTGAGCTCCGG 596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GATGAAATATATTCCAGATCGGCATCGGAAAATCGCATCTGAGTTCGATTTGAGCTCCGG 553
Query 597 CGATGAAGAATTGCCGGTTCCGGGATTCATAAACGCTATTCCGACGAAATTTATGCCGCC 656
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 554 CGATGAGGAATTGCCGGTTCCAGGATTCATAAACGCTATTCCGACCAAATTTATGCCGCC 613
Query 657 TGGATTGTTCAATAAGGAAGCTTACGAGGCTTACGTAGAGCTAGCGCCGAGATTCGCAGA 716
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 614 TGGATTGTTCAACAAAGAAGCTTACGAGGCTTACGTCGAGCTAGCGCCGAGATTCGCCGA 673
Query 717 TGCGAAGGGTATTTTGGTTAATTCCTTCACGGAGCTTGAGCCGCACCCGTTTGACTATTT 776
||||||||||||| |||| ||||||||| | ||||||||||| |||||||||||||||||
Sbjct 674 TGCGAAGGGTATTATGGTAAATTCCTTCGCCGAGCTTGAGCCACACCCGTTTGACTATTT 733
Query 777 CTCTCACCTGGAGAAA-TTCCCTCCGGTTTACCCGGTCGGACCGATTCTCAGCTTGAAAG 835
|||||||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 734 CTCTCACCTGGA-AAGCTTCCCTCCGGTGTACCCAGTCGGGCCGATTCTCAGCTTGAAAG 792
Query 836 ATCGAGCGAGTCCGAACGAAGAAGCAGTCGATCGGGATCAGATCGTTGGGTGGCTCGATG 895
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 793 ATCGAGCGAGTCCGAACGAAGAAGCAGCCGATCGGGATCAGATCGTTGGGTGGCTTGATG 852
Query 896 ATCAGCCGGAGTCATCGGTGGTGTTCCTCTGTTTCGGGAGCAGAGGAAGCGTTGATGAGC 955
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ATCAGCCAGAGTCCTCGGTGGTGTTCCTCTGTTTCGGGAGCAGAGGAAGCGTTGATGAGA 912
Query 956 CGCAAGTGAAGGAGATAGCTCGAGCTTTGGAACTCGTCGGCTGCAGATTTCTTTGGTCAA 1015
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 913 CGCAAGTGAAGGAGATAGCTCAAGCGTTGGAACTCGTCGGCTGCAGATTTCTTTGGTCAA 972
Query 1016 TTAGAACAAGCGGCGACGTCGAGACGAATCCTAACGATGTGTTGCCGGAGGGGTTCATGG 1075
|| |||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 973 TTCGAACAAGCGGCGCCGTGGGGACGAATGCTAACGATGTGTTGCCGGAGGGGTTCATGG 1032
Query 1076 GCCGAGTAGCAGGCCGAGGTTTGGTATGTGGTTGGGCTCCACAAGTGGAAGTGTTGGCCC 1135
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GCCGAGTAGCGGGCCGAGGTTTGGTATGTGGTTGGGCTCCACAAGTGGAAGTGTTGGCCC 1092
Query 1136 ATAAAGCAATAGGAGGATTTGTGTCTCACTGTGGTTGGAACTCCACGCTTGAAAGCTTAT 1195
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1093 ATAAAGCAATAGGCGGATTTGTGTCTCACTGTGGTTGGAATTCTACGCTTGAAAGCTTAT 1152
Query 1196 GGTTCGGGGTTCCTGTCGCAACGTGGCCGATGTACGCAGAGCAACAGCTTAACGCCTTCA 1255
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1153 GGTTCGGCGTTCCTGTCGCCACGTGGCCGATGTACGCAGAGCAACAGCTTAACGCTTTCA 1212
Query 1256 CGCTGGTGAAAGAGCTTGGGCTTGCGGTGGACCTGCGGATGGATTACGTGTCGAGTCGTG 1315
|| |||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||
Sbjct 1213 CGTTGGTGAAAGAGCTTGGACTTGCGGTGGATCTCCGGATGGATTACGTGTCGAATCGTG 1272
Query 1316 GGGGTTTGGTGACTTGTGATGAGATAGCCAGAGCCGTACGATCTTTGATGGACGGTGGAG 1375
||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1273 GGGGTTTGGTGGCTTGTGATGAGATAGCCAGAGCCGTCCGATCGTTGATGGACGGTGGGG 1332
Query 1376 ATGAGAAGAGAAAAAAGGTTAAGGAGATGGCTGATGCGGCAAGGAAGGCTTTGATGGATG 1435
||||||| || |||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 1333 ATGAGAAAAGGAAAAAGGTTAAGGAGATGGCTGATGCAGCGAGGAAGGCTTTGAGGGATG 1392
Query 1436 GAGGATCGTCTTCTTTGGCAACTGCTCGATTCATCGCAGAATTGTTTGAAGATGGTTCGT 1495
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1393 GAGGATCGTCGTCTTTGGCAACTGCTCGATTCATCGGAGAATTGTTTGAAGATAGTTCGT 1452
Query 1496 CGTGCTAATGCAAATGTTGGTGCGATAATT 1525
|||| |||||||||||||||||| || |||
Sbjct 1453 CGTGTTAATGCAAATGTTGGTGCAATCATT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5