BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07260.1
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470743 jgi|Araly1|470743|fgenesh2_kg.1__697__AT1G07260.1 2257 0.0
> Ahg470743 jgi|Araly1|470743|fgenesh2_kg.1__697__AT1G07260.1
Length=1628
Score = 2257 bits (1222), Expect = 0.0
Identities = 1499/1628 (92%), Gaps = 37/1628 (2%)
Strand=Plus/Plus
Query 99 AAGCATTAAACACaag-aatagagagagaagaaagaagaagacgatgaaagcagaagcag 157
||| ||||||||| || | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 31 AAGTATTAAACAC-AGTGACAGAGAGAGAAGAAAGAAGAGGACGATGAAAGCAGAAGCAG 89
Query 158 agaTCATCTTCGTTACATATCCATCCCCTGGTCATCTTCTTGTCTCCATTGAATTCGCTA 217
| || ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 90 AAATTATCTTTGTTACATATCCAGCCCCTGGTCATCTTCTTGTCTCCATCGAATTCGCTA 149
Query 218 AATCTCTCATCAAACGTGATGATCGCATCCACACCATCACCATCCTCTACTGGGCTTTAC 277
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 150 AATCTCTCATCAAACGTGATGATGGCATCCACACCATCACCATCCTCCACTGGGCATTAC 209
Query 278 CTCTCGCTCCTCAAGCCCACCTTTTCGCTAAGTCCCTCGTTGCTTCACAGCCTCGAATCC 337
|||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||| |||
Sbjct 210 CTCTCGCTCCTCAAGCCCACCTCTTCGCCAAGTCTCTCGTTGCTTCAGAGCCTCGAGTCC 269
Query 338 GTCTCCTTGCGTTGCCTGATGTTCAAAACCCTCCACCATTGGAACTCTTCTTTAAAGCTC 397
||||| |||| |||||||||||||| |||||||| |||||||| |||||||||||||| |
Sbjct 270 GTCTCGTTGCTTTGCCTGATGTTCAGAACCCTCCGCCATTGGAGCTCTTCTTTAAAGCCC 329
Query 398 CCGAAGCTTATATTCTTGAGTCCACCAAGAAAACAGTTCCTTTAGTCAGAGACGCTCTCT 457
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CCGAGGCTTATATTCTTGAGTCCACCAAGAAAACAGTTCCTTTAGTCAGAGACGCTCTCT 389
Query 458 CCACTCTAGTTT-CTTCACGTAAAGAATCCGGTTCGGTTCGTGTAGTCGGTTTGGTTATC 516
|||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 390 CCACTCTA-TTTACTTCACGTAATGAATCCGGTTCGGTTCGTGTCGTCGGTTTGGTTATC 448
Query 517 GAttttttttGTGTTCCAATGATCGAAGTGGCAAACGAGCTTAACCTTCCTTCTTACATC 576
||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 449 GATTTCTTCTGTGTTCCAATGATCCAAGTGGCAAACGAGTTTAACCTTCCTTCTTACATT 508
Query 577 TTCCTAACGTGTAACGCTGGGT-TTTTAAGTATGATGAAGTATCTCCCTGAGAGACATCG 635
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 509 TTCCTAACGTGTAACGCTGG-TCTTTTAAGTATGATGAAGTATCTCCCTGAGAGACATTG 567
Query 636 CATAACCACTTCTGAGCTAGATTTAAGCTCCGGCAACGTAGAACATCCAATTCCTGGCTA 695
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 568 CATAACTGCTTCTGAGCTAGATTTAAGCTCCGGCGACGTAGAACATCCAATTCCCGGCTA 627
Query 696 CGTCTGCTCCGTGCCGACGAAGGTTTTGCCTCCAGGTCTATTCGTGAGAGAGTCCTACGA 755
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 628 TGTCTGCTCCGTGCCGACGAAGGTTTTGCCTCCAGGTCTATTCGTGAGTGAGTCATACAA 687
Query 756 GGCTTGGGTCGAGATTGCAGAGAAGTTCCCTGGAGCCAAGGGCATTTTGGTAAACTCAGT 815
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 688 GGCTTGGGTCGAGATTGCAGAAAAGTTCCCTGGAGCCAAGGGTATTTTGGTAAACTCATT 747
Query 816 CACATGTCTTGAGCAGAATGCATTTGATTACTTCGCTCGTCTT-GATGAGAACTATCCTC 874
|||||||||||||||||| |||||||||||||||||||||||| | ||||| ||| ||||
Sbjct 748 CACATGTCTTGAGCAGAACGCATTTGATTACTTCGCTCGTCTTCG-TGAGAGCTACCCTC 806
Query 875 CGGTTTACCCGGTCGGACCGGTTCTTAGTTTGAAGGATCGTCCGTCTCCAAATCTGGACG 934
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 807 CGGTTTACCCGGTCGGACCGGTTCTTAGTTTGAAGGATCGTCCGTCTCCGGACCTGGACC 866
Query 935 CATCGGACCGGGATCGGATCATGAGATGGCTCGAGGACCAGCCGGAGTCGTCAATTGTGT 994
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CATCGGACCGGGACCGGATCATGAGATGGCTCGAGGACCAGCCGGAGTCGTCAATTGTGT 926
Query 995 ATATCTGCTTCGGAAGCCTCGGAATCATTGGCAAGCTGCAGATTGAAGAGATAGCTGAAG 1054
| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||
Sbjct 927 ACATCTGCTTCGGAAGCCTCGGAATCATTGGCAAACCGCAAATTGAAGAGATAGCTCAAG 986
Query 1055 CCTTGGAACTCACCGGCCACAGGTTTCTTTGGTCAATACGTACAAATCCGACGGAGAAAG 1114
|||| ||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||
Sbjct 987 CCTTAGAACTCACCGGCCACCGGTTTCTTTGGTCCATCCGTACAAATCCTACGGAGAAAG 1046
Query 1115 CGAGCCCGTACGATCTGTTGCCGGAGGGATTTCTCGATCGGACGGCCAGTAAGGGATTGG 1174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1047 CGAGCCCGTACGATCTGTTGCCGGAGGGATTTCTCGATCGGACGGCTTGTAAGGGACTGG 1106
Query 1175 TGTGTGATTGGGCCCCGCAAGTAGAAGTTCTGGCCCATAAAGCGCTCGGAGGATTCGTGT 1234
|||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1107 TGTGCGATTGGGCTCCGCAAGTGGAAGTGCTGGCCCATAAAGCGATCGGAGGATTCGTGT 1166
Query 1235 CTCACTGCGGTTGGAACTCTGTACTGGAGAGCTTATGGTTCGGTGTTCCGATCGCCACGT 1294
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1167 CTCACTGTGGTTGGAACTCCGTGCTGGAGAGCTTATGGTTCGGTGTTCCGATCGCCACGT 1226
Query 1295 GGCCAATGTACGCTGAGCAACAGTTAAACGCATTCTCGATGGTGAAGGAGTTAGGGTTAG 1354
|||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1227 GGCCAATGTACGCTGAACAACAGCTAAACGCGTTCACGATGGTGAAGGAGTTAGGGTTAG 1286
Query 1355 CCGTGGAGCTGCGTTTAGACTACGTTTCGGCGTACGGAGAGATAGTAAAAGCTGAGGAGA 1414
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CCGTGGAGCTGCGTTTAGATTACGTTTCGGCGTACGGAGAGATAGTAAAAGCTGAGGAGA 1346
Query 1415 TCGCGGGAGCCATACGATCAT-TGATGGACGGTGAGGATACGCCGAGGAAGAGAGTGAAG 1473
|||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 1347 TCGCAGGAGCCATACGATC-TCTGATGGACGGTGAGGATACACCGAGGAAGAGAGTGAAG 1405
Query 1474 GAGATGGCGGAAGCGGCGAGGAATGCTTTGATGGACGGAGGATCTTCGTTTGTTGCGGTT 1533
|||||||| || ||||||||||| ||||||||||||| ||||||||| ||| ||||||||
Sbjct 1406 GAGATGGCAGAGGCGGCGAGGAAGGCTTTGATGGACGAAGGATCTTCCTTTCTTGCGGTT 1465
Query 1534 AAACGATTTCTCGACGAGTTGATCGGCGGAGATGTTTAGTTCTATTATAAACGTCGTCGT 1593
||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1466 AAAGGATTCCTCGACGAGTTGATCGGCGGGGATGTTTAGTTCTATTATAAACGTCGTCGT 1525
Query 1594 TCGT-GCGTGTTTTGTTTTCAATCGCTTCTAACTTTTTTGGGTACAATTTCAGGTTGGTT 1652
| || |||||||||| ||||||||| || | || | ||| |||| |
Sbjct 1526 T-GTTGCGTGTTTTGCTTTCAATCG-TT-T--CT---------A---TTT--GGTT--T- 1563
Query 1653 TGGATTTGGTTAAAGTCGGTTTAAGTTTAGACATCAACTTAAA-TAAAATTCCTAAGAAA 1711
||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1564 -GGATTTGGTTA--GTCGGTTTAAGCTTAGACATCAACTTAAAATAAAATTCCCAAGAAA 1620
Query 1712 TTGAATCA 1719
|||||||
Sbjct 1621 CTGAATCA 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5