BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07270.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311790 jgi|Araly1|311790|fgenesh1_pm.C_scaffold_1000570 2130 0.0
Ahg900741 jgi|Araly1|900741|Al_scaffold_0004_1391 1170 0.0
> Ahg311790 jgi|Araly1|311790|fgenesh1_pm.C_scaffold_1000570
Length=1527
Score = 2130 bits (1153), Expect = 0.0
Identities = 1417/1540 (92%), Gaps = 35/1540 (2%)
Strand=Plus/Plus
Query 1 ATGCCTACCAA---CGCCGGGACAAGTTTGTCTTCTTACAAGCATATTGTAGCCATCGGA 57
||||||||||| ||||||| | ||||| |||||||||||| || ||||| ||| |||
Sbjct 1 ATGCCTACCAACGCCGCCGGGGCGAGTTTATCTTCTTACAAGTATTTTGTAACCACCGG- 59
Query 58 ACGACGGTGAAATCCGAGAGCCTTGAATCTGCCGCATATGAGATTCCGCGGAAGAGAAAG 117
||||||||||| ||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 60 --GACGGTGAAATTCGAAAGCCTTGAATCTGCTGCGTATGAGATTCCTCGGAAGAGAAAG 117
Query 118 ATGAGATCGGATTCAGC-G--GC-G-G-------TGTCTGGTAATTCAGTCT-CTACGCC 164
||||||||||||||||| | || | | ||||||| |||||| ||| || ||||
Sbjct 118 ATGAGATCGGATTCAGCGGCCGCGGTGAATCTTATGTCTGGAAATTCAATCTCCT-CGCC 176
Query 165 GAAGAAATTGAAATCTCATCTACCAAGTTCTGTTCCCAATCCCGGAATGTCAGAAAAGGA 224
|||||||||||||||||||| ||| ||| |||| | |||||| |||| |||| ||||||
Sbjct 177 GAAGAAATTGAAATCTCATCGACCTTGTTTTGTTTCTAATCCCAGAATATCAGTAAAGGA 236
Query 225 AGTTGTGGAAGATTCTAATGAAATTC--TGAGATAT-CCAGTGAATTTGGCTGTGTCTGA 281
|||| ||||| ||| | | || || | ||| || | |||| | | | | |||||
Sbjct 237 AGTTATGGAA-ATTTTGA-GAGATCCAGTGA-ATTTGGTAGTGCA-GAAG-T-TATCTGA 290
Query 282 TTGTTTAGGCACTAAATCTAAGTGGAGTCCTAGAGATGAAGAGCAAATGAGAGCTGTGAA 341
|||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 291 TTGTTTAGGCTCTAAATCTAACTGGAATCCTAGAGATGAGGAGCAAATGAGAGCTGTGAA 350
Query 342 AGAGGCATTGCACGTGTCCAAAGCACCATCAACAATTCTTTGCCGTGAGGACGAACAAAT 401
|||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||
Sbjct 351 AGAGGCATTGCACGTGTCCAAACCACCATCAACAATTGTTTGCCGCGAGGACGAACACAT 410
Query 402 TCGGATTTTCGAG-TTTGTGAAAGGCTGCATAGATCAGCAAAAGGCTGGGAGTTTATACA 460
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 TCGCATTTTCG-GCTTTGTGAAAGGCTGCATAGATCAGCAAAAGGCTGGGAGTTTGTACA 469
Query 461 TATGTGGTTGTCCTGGAACTGGAAAATCACTGTCCATGGAGAAAGTAGTACAACAAGTTG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TATGTGGTTGTCCTGGAACTGGAAAATCACTGTCCATGGAGAAAGTAGTACAACAAGTTG 529
Query 521 GTGATTGGTCAACTCAGGCAGGTTTGCCACCAGTGGATACATTGTCTGTGAATTGCACGT 580
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 530 GTGATTGGTCAACGCAGGCAGGTTTGCCCCCCGTGGATACATTGTCTGTGAATTGCACGT 589
Query 581 CGCTGAGTAAAACAACAGATATTTTCAGCAAGATTCTTGGTGAAATCAAGCCTGGCAAGA 640
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 590 CGCTGACTAAAACAACAGATATTTTCAGCAAGATACTTGGTGAAATCAAGCCTGGCAAGA 649
Query 641 ATGCTAACACCAACTCTTCACCTCTACAACATCTTCAGAA-TTTGTTTTCTCAAAAACAA 699
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 650 ATGCTAACACCAATTCTTCACCTCTACAACATCTTCA-AAGTTTGTTTTCTCAAAAACAA 708
Query 700 GAATCTTCCAGCTCAAGAATGATGTTAATAATTGCAGATGAGATGGATTACTTAATCAC- 758
| ||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 709 GCATCGTCCAGCTCGAGAATGATGTTAATAATAGCAGATGAGATGGATTACTTGATCACT 768
Query 759 AAAAGACCGAGGAGTCCTTTATGATCTTTTCATGCTTACAACTTTGCCATTTTCAAGGTG 818
|||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct 769 AAAA-ACCGAGGAGTCCTGTATGATCTTTTTATGCTTATAACTTTGCCATTTTCAAGGTG 827
Query 819 TATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAA 887
Query 879 GTCCCTTAATTGCAAACCTATGGTTATAACATTCCGTGCTTATTCTAAAGATCAGATCCT 938
|||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 888 GTCCCTTACTTGCAAACCTATGGTTATAACTTTCCGTGCTTATTCTAATGATCAGATCCT 947
Query 939 TAGGATACTACAGGAGAGGCTTAGGGTTCTTTCATATGTTGCATTTCAACCAAAAGCCTT 998
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 948 TAGGATACTTCAGGAGAGGCTTATGGTTCTTTCATATGTTGCATTTCAACCAAAAGCCTT 1007
Query 999 GGAGCTCTGTGCCAGAAAAGTTGCTGCAGCATCAGGTGACATGAGAAAGGCACTATGTGT 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GGAGCTCTGTGCCAGAAAAGTTGCTGCAGCATCAGGTGACATGAGAAAGGCACTATGTGT 1067
Query 1059 CTGCAGAAGTGCTCTTGAAATCTTAGAAATAGAAACAAGAGGATCAACTGGTCCAGAATC 1118
||||||||||||||| |||||||||||||| ||| |||| ||||| |||||||||||||
Sbjct 1068 CTGCAGAAGTGCTCTAGAAATCTTAGAAATGGAAGTAAGAAGATCAGCTGGTCCAGAATC 1127
Query 1119 ACAAGGTCCTACTCCAGATGATTCAGTGGTGAGGATGGATCATATGGCTGCTGCATTATC 1178
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1128 ACAAGGTCCTACTACAGATGATTCAGTGGTTAGGATGGATCATATGGCTGCTGCATTATC 1187
Query 1179 TAAGACTTTTAAATCTCCTGTAGTTGAGACAATTCAGTCTCTTCCTCAACACCAACAAAT 1238
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1188 CAAGACATTTAAATCACCTGTAGTTGAGACAATTCAGTCTCTCCCTCAACACCAACAAAT 1247
Query 1239 CATAATATGTGCTGCTGCAAAGGCTTTCAGAGGGAGCAAAAAGGATGCAACCGTTGGAGA 1298
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1248 CATAATATGTGCTGCTACAAAGGCTTTCAGAGGAAGCAAAAAGGATACAACCGTTGGAGA 1307
Query 1299 GCTTAATAAGTTATATCTAGAAATCTGTAAATCTTGGATGATTTCTCCAGCTGGAATCAC 1358
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1308 GCTTAATATGTTATATCTAGAAATCTGTAAATCTTGGATGATTTCGCCAGCTGGAATTAC 1367
Query 1359 AGAGTTCACTAACATGTGTACAGTGCTAAACGATCAGGGGATATTAAAAGTCGGTCAAGC 1418
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1368 AGAGTTCACTAATATGTGTACAGTGCTAAACGATCAGGGGATATTAAAATTCGGTCAAGC 1427
Query 1419 TCGTAGGGATAAGCTAAAGAGAGTTAGCCTGAGAGTAGACGAATCAGACATCACGTTTGC 1478
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TCGTGGGGATAAGCTAAAGAGAGTTAGCCTGAGAGTAGACGAATCAGACATCACGTTTGC 1487
Query 1479 TCTGCAGGAGATACGATTTTTCCGCAACTGTCTACTGTGA 1518
||||||||||||||||||||||||||||||||| |||||
Sbjct 1488 TCTGCAGGAGATACGATTTTTCCGCAACTGTCTTGTGTGA 1527
> Ahg900741 jgi|Araly1|900741|Al_scaffold_0004_1391
Length=1482
Score = 1170 bits (633), Expect = 0.0
Identities = 1061/1264 (84%), Gaps = 44/1264 (3%)
Strand=Plus/Plus
Query 277 TCTGATTGTTTAGGCAC-TAAATCTAAGTGGAGTCCTAGAGATGAAGAGCAAATGAGAGC 335
|||| |||||||| | | |||||| || |||| ||||||||||| || ||||||| |||
Sbjct 241 TCTGTTTGTTTAGAC-CTTAAATCAAAATGGAACCCTAGAGATGATGACCAAATGAAAGC 299
Query 336 TGTGAAAGAGGCATTGCACGTGTCCAAAGCACCATCAACAATTCTTTGCCGTGAGGACGA 395
|||||| ||||||||||| ||||| || ||||| ||||| || |||| |||||||| ||
Sbjct 300 TGTGAAGGAGGCATTGCATGTGTCTAAGGCACCGTCAACTGTTGTTTGTCGTGAGGATGA 359
Query 396 ACAAATTCGGATTTTCGAGTTTGTGAAAGGCTGCATAGATCAGCAA-AAGGCTGGGAGTT 454
|| | ||| ||||||||||||||||||| || || || ||| || || ||||||||||
Sbjct 360 GCAGAGACGGGTTTTCGAGTTTGTGAAAGGTTGTATGGAACAG-AAGAAAGCTGGGAGTT 418
Query 455 TATACATATGTGGTTGTCCTGGAACTGGAAAATCACTGTCCATGGAGAAAGT-AGTACAA 513
| || |||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 419 TGTATATATGTGGTTGTCCTGGAACTGGAAAGTCACTATCCATGGAGAAAGTAAG-ACAG 477
Query 514 CAAGTTGGTGATTGGTCAACTCAGGCAGGTTTGCC--ACCAGTGGATACATTGTCTGTGA 571
|||| || || ||| ||| |||||||||||||| || ||| | | ||||||| |
Sbjct 478 CAAGCTGAAGACTGGGCAAAGCAGGCAGGTTTGCCTTGCC--CGGAAATAGTGTCTGTTA 535
Query 572 ATTGCACGTCGCTGAGTAAAACAACAGATATTTTCAGCAAGATTCTTGGTGA-AATCAAG 630
||||||| || |||| ||||| |||||||||||| |||||| |||||| | ||| ||
Sbjct 536 ATTGCACATCACTGACAAAAACTACAGATATTTTCTCCAAGATACTTGGTAACAAT-GAG 594
Query 631 -CCTGGCAAGAATGCTAACACCAAC-TCTTCACCTCTACAACATCTTCAGAATTTGTTTT 688
|| || ||||| ||||| | |||||||||||| |||| ||||||| ||||||||
Sbjct 595 TCC-GGGAAGAAAGCTAA-TGGTTCATCTTCACCTCTAGAACAACTTCAGAGTTTGTTTT 652
Query 689 CTCAAAAACAAGAATC-TTCCAGCTC-AAGAATGATGTTAATAATTGCAGATGAGATGGA 746
||||||| ||| || | |||||||| ||| |||||| |||||||||||||||| |||||
Sbjct 653 CTCAAAAGCAACAA-CAATCCAGCTCAAAG-ATGATGCTAATAATTGCAGATGAAATGGA 710
Query 747 TTACTTAATCACAAAAGACCGAGGAGTCCTTTATGATCTTTTCATGCTTACAACTTTGCC 806
|||||| ||||||| ||||||||| || ||| |||| ||||| ||||| |||||||||||
Sbjct 711 TTACTTGATCACAAGAGACCGAGGTGTACTTCATGAGCTTTTTATGCTCACAACTTTGCC 770
Query 807 ATTTTCAAGGTGTATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCT 866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TTTTTCAAGGTGTATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCT 830
Query 867 TCCAAAATTGAAGTCCCTTAATTGCAAACCTATGGTTATAACATTCCGTGCTTATTCTAA 926
||||||||||||||| ||||||||||||||| ||||| | || |||||||| ||||||||
Sbjct 831 TCCAAAATTGAAGTCTCTTAATTGCAAACCTTTGGTTGTCACTTTCCGTGCCTATTCTAA 890
Query 927 AGATCAGATCCTTAGGATACTACAGGAGAGGCTTAG-GGTTCTTTCATATGTTGCATTTC 985
|||||||||||||||||||| ||||| |||||| | || ||| ||| |||||||||||
Sbjct 891 GGATCAGATCCTTAGGATACTGCAGGAAAGGCTT-GTGGCACTTCCATTTGTTGCATTTC 949
Query 986 AA-CCAAAAGCCTTGGAGCTCTGTGCCAGAAAAGT-TGCTGCAGCATCAGGTGACATGAG 1043
| |||| |||||||| | ||||| |||||||| | | || ||| |||| ||||||||
Sbjct 950 AGTCCAAT-GCCTTGGAAATTTGTGCAAGAAAAGTAT-CAGCTGCAACAGGAGACATGAG 1007
Query 1044 AAAGGCACTATGTGTCTGCAGAAGTGCTCTTGAAATCTTAGAAATAGAAACAAGAGGATC 1103
|||||| |||||||||||||| || ||||| |||||||||||||||||| |||||| |
Sbjct 1008 AAAGGCTCTATGTGTCTGCAGGAGCGCTCTAGAAATCTTAGAAATAGAAGTTAGAGGAAC 1067
Query 1104 AACTGG-TCCAGAATCACAAGGTCCTA-CTCCAGATGATTCA-GTGGTGAGGATGGATCA 1160
|| | | || |||| |||||||||| | ||||||| | | || ||||||| |||||||||
Sbjct 1068 AA-TAGATCAAGAACCACAAGGTCC-AGCTCCAGAGGGT-CAAGTGGTGAAGATGGATCA 1124
Query 1161 TATGGCT-GCTGCATTATCTAAGACTTTTAAATCTCCTGTAGTTGAGACAATTCAGTCTC 1219
|||| | |||||||| || ||||| ||||||||||| |||||||| || || |||||||
Sbjct 1125 TATGA-TAGCTGCATTGTCCAAGACGTTTAAATCTCCAGTAGTTGACACCATCCAGTCTC 1183
Query 1220 TTCCTCAACACCAACAAATCATAATATGTGCTGCTGCAAAGGC-TTTCAGAGGGAGCAAA 1278
| ||||||||||||||||||||| | ||| ||||||||||||| ||| ||||| ||||||
Sbjct 1184 TACCTCAACACCAACAAATCATAGTCTGTTCTGCTGCAAAGGCCTTT-AGAGGAAGCAAA 1242
Query 1279 AAGGAT-GCAACCGTTGGAGAGCTTAA-TAAGTTATATCTAG-AAATCTGTAAATCTTGG 1335
|||||| | |||| ||| |||| |||| |||| |||| || | ||||||||||||||| |
Sbjct 1243 AAGGATAG-AACCATTGCAGAG-TTAAATAAGCTATA-CTTGGAAATCTGTAAATCTTCG 1299
Query 1336 ATGATTTCTCCAGCTGGAATCACAGAGTTCACTAACATGTGTACAGTGCTAAACGATCAG 1395
||||| ||||||||||||| || ||||||||||||||||| |||||||||||||| |||
Sbjct 1300 ATGATAACTCCAGCTGGAATTACTGAGTTCACTAACATGTGCACAGTGCTAAACGACCAG 1359
Query 1396 GGGATATTAAAAGTCGGTCAAGCTCGTAGG-GATAAGCTAAAGAGAGTTAGCCTGAGAGT 1454
||||| |||||| || |||| ||||| || ||||||||||||||||| ||||| |||||
Sbjct 1360 GGGATTTTAAAACTCAGTCATGCTCG-AGACGATAAGCTAAAGAGAGTGAGCCTTAGAGT 1418
Query 1455 AGACGAATCAGACATCACGTTTGCTCTGCAGGAGATACGATTTTTCCGCAACTGTCTACT 1514
||| ||| |||||||||| |||||||| |||| || ||||| |||||||||||||| ||
Sbjct 1419 AGATGAAGCAGACATCACATTTGCTCTTAAGGAAATTCGATTCTTCCGCAACTGTCTTCT 1478
Query 1515 GTGA 1518
|||
Sbjct 1479 ATGA 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5