BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07280.1
Length=2090
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470745 jgi|Araly1|470745|fgenesh2_kg.1__699__AT1G07280.1 2505 0.0
> Ahg470745 jgi|Araly1|470745|fgenesh2_kg.1__699__AT1G07280.1
Length=1827
Score = 2505 bits (1356), Expect = 0.0
Identities = 1629/1755 (93%), Gaps = 42/1755 (2%)
Strand=Plus/Plus
Query 203 AAAATGGGAGTGAAAGTAGCAACAAG-CTCCACCTTCCATCAATGGGTGGCTCATCCTAT 261
||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||
Sbjct 1 AAAATGGGAGTGAAAGTAGCAAC-AGCCTCTACCTTCCATCAATGGGTGGCTCATCCCAT 59
Query 262 AGTTCATCATTCCTCTTCCCTTTCTCAAACCCTAGCTTCCTCCGCCGTTTCTTCTCCTTC 321
||||||||| | || | | |||||||||||||||| ||||||||
Sbjct 60 AGTTCATCA-------------T-TC--A---T--CTTCCTCCGCCGTTTCATCTCCTTC 98
Query 322 AAGACGACGGATCATCGGAAACGACGGACGTTCTTCTCTGTCTTGTCGTTCCGTGATGCA 381
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 99 AAGACGACGGGTCATCGGAAACGACGGACGATCTTCTCTGTCTTGTCGTTCCGTGATGCA 158
Query 382 GAGCCAGAGGCTTAATCCTTCTTCTCCCTTCGGCACTTCTTCGACAAATCTCCGTCACTC 441
|||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 159 GAGCCAGAGGCTTAATCCTTCTTCTCCCTTCGGCACTTCTTCCACGAATCTCCAACACTC 218
Query 442 CAAGTCCTGTGAGCTCTGGGA-ATCAACAAAACGACCTAAAACACAGTTGATTCGCAGAG 500
|||||| |||||||||| ||| ||||||||||| |||||| || ||||||||||||||||
Sbjct 219 CAAGTCATGTGAGCTCT-GGAGATCAACAAAACAACCTAATACTCAGTTGATTCGCAGAG 277
Query 501 CTTTTAGCGCAAAC-GTCGATCCGTTTTCCGAGGAAGAGTTTGCGAAAAAGATGCAGGAG 559
|||||||||||||| || ||||| ||||||||||| |||||| | ||||||||||| |||
Sbjct 278 CTTTTAGCGCAAACTGT-GATCCCTTTTCCGAGGAGGAGTTTTCTAAAAAGATGCAAGAG 336
Query 560 CTAACTCTCAAATTCCAAGTCTCTAACGAAGAAGAAGACA-ACGAATCGGATAC-ACGCA 617
||||||||||||||||||||||||||| |||||| | | | || |||| ||||| | |||
Sbjct 337 CTAACTCTCAAATTCCAAGTCTCTAACCAAGAAG-ACAAATACAAATCAGATACGA-GCA 394
Query 618 TTGACGATTACACTCGAAAGATGGACATAGTAGGAAGCCATAATAATTTCAGGTCAGATT 677
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 395 TTGACGATTCCACTCGAAAGATGGACATCGTAGGAAGCCATAGTAATTTCAGGTCAGATT 454
Query 678 CAATGGAACCGCCATGGCCAGAGATGGTGCAAATGTCAAACATCGAGAGGAAAGCAAACA 737
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 455 CAATGGAACCGCCATGGCCAGAGATGGTGCAAATGTCTAGCATCGAGAGGAAAGCAAACA 514
Query 738 GTGTAGATCTTCCTCTTTCGCTTAGGATCATAAAGAGAAAGTTACAGATGGAGGAAGGAG 797
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GTGTCGATCTTCCTCTTTCGCTTAGGATCATAAAGAGAAAGTTACAGATGGAGGAAGGAG 574
Query 798 TTTT-AAACCAAGTCGGAGAATCAGCTTGTTGCTCTGTTAAGAAAGCTTTCTCTTCAATG 856
|||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 575 TTTTGAAA-CAAGTCGGAGAATCAGCTTGTTGCTCTGTGAAGAGAGCTTTCTCTTCAATG 633
Query 857 GTGTTTATGATTAGAGAACTTCAAAGCTTTACGTTACACATGAGAGAGCTTCTTCTCTTC 916
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 634 GTGTTTATGATTAGAGAACTTCAAAGCTTCACGTTACACATGAGAGAGCTTCTTCTCTTC 693
Query 917 GAAGATTTGCAAGGAATTCTTCATCGTGTGAGAAAAGAAATGCAAGCGTCGTTCGTTTGG 976
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 694 GAAGATTTGCAAGGAATTCTTCATCGTGTGAGAAAAGAAATGCAAGCATCGTTTGTTTGG 753
Query 977 TTGTTTCAACAAGTTTTCTCTGCTACTCCTACTTTGATGGTCTCTGTTATGATCCTTCTC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTGTTTCAACAAGTTTTCTCTGCTACTCCTACTTTGATGGTCTCTGTTATGATCCTTCTC 813
Query 1037 GCTAATTTCACGGTTTACTCTATTGAGAGCAACTCTGCTTTAGCCGCCGCCGTAAGTCCC 1096
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GCTAATTTCACGGTTTACTCTATTGAGAGCAACTCTGCTTTAGCCGCCGCCGTAAGTCCT 873
Query 1097 CCGACAACC-C--TCTCTTTCAGCTTCGAAACGACGGCGGAGATAAGTGAAACTCAAGAA 1153
||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 874 CCGACAACCACCCTCTCTTTCAGCTTCGAAACGACGTCGGAGCTAAGTGAAACTCAAGAA 933
Query 1154 ACGAATCAGAAATTCGATTCTTCAATGGTTAAGACGTTCTCTGTTTCTTCTCCTTACGGG 1213
| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 ATAAACCAGAAGTTCGATTCTTCAATGGTTAAGACGTTCTCTGTTTCTTCTCCTTACGGG 993
Query 1214 AAAACATCTTTTGTCGGTGGTGGCGGCGGGAACAATATACCACCGCCGGTACAAAGCGGA 1273
|||||||| ||||||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 994 AAAACATCATTTGTCGGTGGTGGCGGTGGGAACAACATCCCACCGCCAGTACAAAGCGGA 1053
Query 1274 ACAGATGGTGATGGATCTGATCAGTTTAGAAAATCTCAATTCTCATCATCGTCTCTGGGT 1333
||||| || |||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1054 ACAGAGGGGGATGGATCTGATCAATTCAGAAAATCTCAATTCTCATCATCGTCTCTCGGT 1113
Query 1334 GCAACAAGTGCGGATTCAGATGTATCTGTGTCAGGGC-AAGAAGAGATCAGACTGTGGAA 1392
||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||
Sbjct 1114 GCAACAAGTGCGGATTCAGATGTATCTGTCTC-GGGCCAAGAAGAGATTAGACTGTGGAA 1172
Query 1393 TTCGATATTGGAGGAAACTGCGAAAATGGAAACGTTGGATCACGAGACGATGAAGGGGAT 1452
|||||| ||||||||||| | ||||||||||||||| |||||||| ||||||||| | |
Sbjct 1173 TTCGATCTTGGAGGAAACGGAGAAAATGGAAACGTTAGATCACGACACGATGAAGCAGCT 1232
Query 1453 GGTTTCTCCGGTGGAAGCTCGATTAGAAGCAGAAGAATCCATGGATTACTTCAAGACAGA 1512
|||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1233 GGTTTCTCCGGTAGAGGCTAGATTAGAAGCAGAGGAATCCATGGATTACTTCAAGACAGA 1292
Query 1513 GCTTCTTTACCAAACGGGATTGTCTCAGGAGCCTGGAAACGTTCTCCTTCTTGCTAATTA 1572
|||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1293 GCTTCTCTACCAAACGGGATTGTCTCAAGAGCCTGAAAACGTTCTTCTTCTTGCTAATTA 1352
Query 1573 CGCACAGTTTCTCTACCTTA-TCATTCATGACTACGACAGAGCGGAAAAGTATTTCAAGA 1631
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1353 CGCACAGTTTCTCTAC-TTAATCATCCATGACTACGACAGAGCGGAAAAGTATTTCAAGA 1411
Query 1632 GAGCAGCAAAAGCAGAGCCAGCGGACGCAGAGGCATTGAACAAATATGCGACGTTTCTGT 1691
|||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1412 GAGCAGCAAAAGCAGAACCAGCGGACGCAGAGGCACTGAACAAATATGCAACGTTTCTGT 1471
Query 1692 GGAGAGCGAGAAACGATATTTGGAGAGCGGAGGAAACCTACTTAGAAGCGATCTCCGCTG 1751
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1472 GGAGAGCAAGAAACGATATTTGGAGAGCAGAGGAAACGTACTTAGAAGCGATCTCCGCTG 1531
Query 1752 ATCCAACAAACTCAGTCTACTCCGCAAACTACGCACATTTCCTCTGGAACACCGGTGGTG 1811
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1532 ATCCAACAAACTCCGTCTACTCCGCAAACTACGCACATTTCCTTTGGAACACCGGTGGTG 1591
Query 1812 ATGAAACGTGTTTTCCTCTCGACGCTCCATCGCAACAGAACAACACCACATGAATAAAGA 1871
||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct 1592 ATGAAACGTGTTTCCCTCTCGATGCTCCACCGCAACAGAACAACACCACATGAAAAAAGA 1651
Query 1872 GTCACAACAATTTGTGTATGTACAGTGTGTTTTTTGCCTATACAAAACTCATGT-CATGT 1930
||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1652 GTCGCAACAATTTGTGTACGTACAGTGTGTTTTTTGCCTATACAAA-CTCATGTTCATGT 1710
Query 1931 GGCAAACtttttttt 1945
|||||||||||||||
Sbjct 1711 GGCAAACTTTTTTTT 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78618265680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5