BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07290.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470746 jgi|Araly1|470746|fgenesh2_kg.1__700__AT1G07290.1 734 0.0
> Ahg470746 jgi|Araly1|470746|fgenesh2_kg.1__700__AT1G07290.1
Length=1074
Score = 734 bits (397), Expect = 0.0
Identities = 438/458 (96%), Gaps = 2/458 (0%)
Strand=Plus/Plus
Query 150 AAGGTTTCTTAGATGGAGACGGAGATATCTTCCGGTTGATGGAGATAACAGGCGTGACCA 209
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 177 AAGGTTTCTCAGATGGAGACGGAGATATCTTCCGGTTGATGGAGATAACAGACGTGACCA 236
Query 210 CGGGTCTGTGAAACAGTCAGGACCTCTTGTGTCTGGTGCAGCTTACTGTATCTCTTCCTG 269
||| ||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 237 CGGCTCTGTCAAACAGTCAGGACCCCTTGTGTCTGGAGCAGCTTACTGTGTCTCTTCCTG 296
Query 270 CAGCATGATTATATTGAACAAAATTGTTCTCTCCAGCTACAATTTCAACGCAGGGGTCTC 329
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 297 CAGCATGATTATATTGAACAAAATTGTTCTCTCCAGCTATAATTTCAACGCAGGAATCTC 356
Query 330 TTTGATGCTTTATCAAAACTTAATCAGCTGTTTGGTGGTAGCTGTACTAGATATCTCTGG 389
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTTGATGCTATATCAAAACTTAATCAGCTGTTTGGTGGTAGCTGTACTAGATATCTCTGG 416
Query 390 AGTGGTTTCAGTGGAAAAATTTAACTGGAAGTTGATTAGAGTATGGATGCCTGTCAATGT 449
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 417 AGTAGTTTCAGTGGAAAAATTTAACTGGAAGTTGATCAGAGTCTGGATGCCTGTCAATGT 476
Query 450 TATCTTTGTGGGCATGCTGGTCTCGGGAATGTACAGTTTGAAATACATAAACGTCGCTAT 509
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 477 TATCTTTGTGGGCATGCTGGTCTCGGGAATGTACAGTTTGAAATACATTAATGTCGCTAT 536
Query 510 GGTAACTATTCTGAAGAATGCGACGAATATTCTCACAGG-AATAGGGGAGGTATACATGT 568
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||
Sbjct 537 GGTAACTATTCTGAAGAATGCGACGAATATTATTAC-GGCAATAGGGGAGGTATACATGT 595
Query 569 TCCGCAAAAGGCAGAACAACAAGGTTTGGGCTGCAATG 606
||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCCGCAAAAGGCAGAACAACAAGGTTTGGGCTGCAATG 633
Score = 444 bits (240), Expect = 8e-124
Identities = 265/277 (96%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 870 GGATGTGACAAAAGATTCAATGTTTTGGGTAGTGGCAACAGCAAGCGGTTTCCTTGGTTT 929
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 778 GGATGTGACAAAAGATGCAATGTTTTGGGTAGTGGCAACAGCAAGCGGCTTCCTTGGTCT 837
Query 930 AGCCATCAGCTTCACTTCGATGTGGTTCCTGCATCAAACCGGACCCACAACATACAGTTT 989
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 838 AGCCATCAGCTTCACTTCGATGTGGTTCCTGCATCAAACCGGACCGACAACATACAGTTT 897
Query 990 GGTGGGTTCATTAAACAAGGTTCCGATATCACTAGCTGGTCTTGTACTCTTCAACGTCCC 1049
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGTGGGATCATTAAACAAGGTTCCGATATCACTAGCTGGTCTTGTACTCTTCAACGTCCC 957
Query 1050 TCTCAGTCTCCCAAATCTGTTCAGCATACTGTTTGGTTTATTTGCTGGAGTGGTCTTTGC 1109
||| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 TCTGAATCTCCCAAATTTGTTCAGCATACTTTTTGGTTTATTTGCTGGAGTGGTCTTTGC 1017
Query 1110 CAGAGCTAAAATGTCATAAAAAGCGTATTTTCCAAGC 1146
|||||| ||||||||||||| |||||||||||||||
Sbjct 1018 CAGAGCAAAAATGTCATAAA--GCGTATTTTCCAAGC 1052
Score = 180 bits (97), Expect = 2e-44
Identities = 136/153 (89%), Gaps = 9/153 (6%)
Strand=Plus/Plus
Query 1 ATGTCTGCCGTGAAACTGGAAGCAATTGTTTGCCACGAGCCTGATGAATCAGAGCTGAGT 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTGCTGTGAAACTGGAAGCAATTGTTTGCCACGAGCCTGATGAATCAGAGCTGAGT 60
Query 61 CACTTGAGTGATAATGGTAGTAAAACTAAAAACGGAGTTGTCTTTCAACTTCTCGATCAG 120
||||| |||| |||||||||||||| | || ||||||||||||||||||||||
Sbjct 61 CACTTCAGTGGTAATGGTAGTAAAA--A----CG---TTGTCTTTCAACTTCTCGATCAA 111
Query 121 AAGAGTTCCGAACATAGATGGTTTAGTGAAAGG 153
||||||||||||| ||| ||||| |||||||||
Sbjct 112 AAGAGTTCCGAACGTAGGTGGTTAAGTGAAAGG 144
Score = 119 bits (64), Expect = 5e-26
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 715 CTTACTCTTCGTCGAGTTATGGACAAAGCAAAGCAGTCTACAAAGTCTGGCTCTCTTAAT 774
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 706 CTTACTCTTCGTCGAGTCATGGACAAAGCAAAGCAGTCTACAAAGTCTGGCTCGCTCAAT 765
Query 775 GAAGTGTCAATGG 787
|||||||||||||
Sbjct 766 GAAGTGTCAATGG 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5