BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07300.1

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919454 jgi|Araly1|919454|scaffold_100735.1                        737    0.0  


> Ahg919454 jgi|Araly1|919454|scaffold_100735.1
Length=435

 Score =  737 bits (399),  Expect = 0.0
 Identities = 423/435 (97%), Gaps = 0/435 (0%)
 Strand=Plus/Plus

Query  171  CTCTCTCTATCTTTCTCTTGATATGTCAGCTACTGGTATAAAACGGTCCAACCTCAACAC  230
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  1    CTCTCTCTATCTTTCTCTTAATATGTCAGCTACTGGTATAAAACGGTCCAACCTAAACAC  60

Query  231  TAGACCGGTTCAGAGAGATGCTTCGGCTAAGCAAACAGCTATCAAGGGACCTTATGGTAA  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TAGACCGGTTCAGAGAGATGCTTCGGCTAAGCAAACAGCTATCAAGGGACCTTATGGTAA  120

Query  291  GAGTCCGGGATGCACAACAAGCTGCGGATTAAGGTTACCGAGGAAAACAGAAGTGACAGC  350
            |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct  121  GAGTCCGGGATGCACAACGAGCTGCGGGTTAAGGTTACCGAGGAAAACAGAAGTCACAGC  180

Query  351  AGCAAAATTGATCAAGCATCTTGGATGCAAATTTGCAAAAGGTTTGCGTCTGGTGGTGAT  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGCAAAATTGATCAAGCATCTTGGATGCAAATTTGCAAAAGGTTTGCGTCTGGTGGTGAT  240

Query  411  GAGGAAGAAGAAAAGATCTCCACCGTCGAAGGTTTCTTCTTTTTCTGGGAGGTCTCAGCC  470
            ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct  241  GAGGAAGAAGAAAAGATCTCCACCGTCGAAGGTGTCTTCTTTTTCCGGGAGATCTCAGCC  300

Query  471  ACCAATCATCCCAATAAACAATGACAGTCATCGATCAGAGGCCATAGAAGACTGCATACA  530
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ACCTATCATCCCAATAAACAATGACAGTCATCGATCAGAGGCCATAGAAGACTGCATACA  360

Query  531  GTTCATCAACTCATCATCCTCCTTCACCAGATCAAACTCTACTTCTTAAGTGTTATCATT  590
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  361  GTTCATCAACTCATCATCCTCCTTCACCAGATCAAACTCTACTTCTTAAATGTTATCACT  420

Query  591  CCCAAACCTTTTGTC  605
            |||||||| ||||||
Sbjct  421  CCCAAACCCTTTGTC  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27067271070


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5