BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07310.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470748 jgi|Araly1|470748|fgenesh2_kg.1__702__AT1G07310.1 1899 0.0
> Ahg470748 jgi|Araly1|470748|fgenesh2_kg.1__702__AT1G07310.1
Length=1390
Score = 1899 bits (1028), Expect = 0.0
Identities = 1310/1434 (91%), Gaps = 68/1434 (5%)
Strand=Plus/Plus
Query 44 TTTGATACAGATATTTGAGATACGAGCGCACGTTAGCTAAGACCACCGCGTAAGCCACCG 103
|||||||||||||| | ||||||||||||||||||||| | | | ||||
Sbjct 1 TTTGATACAGATATCTAAGATACGAGCGCACGTTAGCT---A--A----G---GCCA--- 45
Query 104 TCTCGTCTTGAAACGCACCG---T-ATTCATGACTTCGTCGGAGCCACTCGACCTGGTTG 159
| ||| ||| |||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 46 TATCGGCTTAAAACGCACCGTATTCATTCATGGCTTCGTCGGAGCCACTCGACCTGGTTA 105
Query 160 TCACCGTCGTCTCTGCCAAGCACCTGAAGAATGTCAACTGGCGTAACGGTGACCTGAAAC 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 TCACCGTCGTCTCTGCCAAGCACCTGAAGAATGTCAACTGGCGTAACGGTGACCTGAAAC 165
Query 220 CCTACGTTGTTCTGTATCTTGACCAAGACCACCCTCTCTCCACCCGCTCCGATGATTCCT 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CCTACGTTGTTCTGTATCTTGACCAAGACCACCCTCTCTCCACCCGCTCCGATGATTCCG 225
Query 280 CCTCCATCAAACCGGTGTGGAACGAGCGGATTACTCTTCCTCTCACCCGATCTGTCCACG 339
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 226 CCTCCATCAAACCGGTGTGGAACGAGCGGATTACTCTTCCTCTCACCCGATCCGTCCACG 285
Query 340 AATCGGTCCTCAACATCGAGGTTTTTCATTCCAATTCTTCGGATCTGGCGAAAACCCTCG 399
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 286 AATCGGTCCTCAACATCGAGATTTTTCATTCCAATTCCTCGGATCTGGCGAAAACCCTCG 345
Query 400 TCGGATCGGTTAGGTTTCCTCTAGCTCGTTTGATTGACTCGGACGGGTCAATGATTCCGG 459
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 346 TCGGATCGGTTAGGTTTCCTCTTGCTCGCTTGATTGACTCGGATGGGTCAATGATTCCGG 405
Query 460 AATTGATCAACTCGCTCGAGCTGGTTCGTCCATCGGGTCGACCACAGGGGAAGATTCGTT 519
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 406 AATTGATCAACTCGCTCGAGCTGGTCCGTCCATCGGGTCGGCCACAGGGGAAGATTCGCT 465
Query 520 TGAAGCTCGCGATCAAAGACAGACCAATCCCTCCACCGCAGCATCCTCCGCCACGTCCTC 579
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 466 TGAAGCTCGCGATCAAAGAGAGACCTATCCCTCCACCGCAGCATCCTCCGCCACGTCCTC 525
Query 580 AATCTCAACCACTAGATTACTATTCTGCCCCTCAAGGAAACCATTATTACTCCCCTAGCc 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AATCTCAACCACTAGATTACTATTCTGCCCCTCAAGGAAACCATTATTACTCCCCTA--- 582
Query 640 ctcctcctcctcctcctcctcAAGCACCGATCACCG-CTCCATCTCCTCAGCGTGACTAC 698
|| ||||||||||||||||| ||||||| || |||| ||||||||||||||||||
Sbjct 583 -----CC-CCTCCTCCTCCTCAAGCTCCGATCA-CGACTCCGTCTCCTCAGCGTGACTAC 635
Query 699 AGAGAATTCTCACAGTCACCGTCTCCGTCTCCTTACGCATTCACTGATCACTACTATTCC 758
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 636 AGAGAATTCTCACAGTCACCGTCTCCGTCTCCTTACGCATTCACTGATCATTACTATTCC 695
Query 759 GGGTATTATTATCCGCCTCCTCCACCACGTTCAATGTACGATCGTGCCTCCAATTACGGC 818
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 GGGTATTATTACCCGCCTCCTCCACCACGTTCAATGTACGATCGTGCCTCCAATTACGGC 755
Query 819 CTCCCAAGTGGCCCATCTGCTCCCGTTGATGCCTTCTCATCGATTGATCACAAGCAGCCT 878
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 756 CTCCCAAGTGGCCCATCTGCTCCCGTCGATGCCTTCTCATCGATTGATCACAAGCAGCCT 815
Query 879 CCTTTAGCTCCTCCTCGGTTTTCTAACTACGGTCCACCGCCTAGTGGGCCCTCAGCACCC 938
|||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||
Sbjct 816 CCTTTAGCCCCTCCTCGGTTTTCCAATTACGGTCCACCGCCTAGTGGGCCATCAGCTCCC 875
Query 939 GTTGATGCCTTTCTGGTTACCGAGTACAAGCCACAAGCTCCACCTATGGGCTCGCGATTG 998
||||||||||||| || || ||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 876 GTTGATGCCTTTCCGGGTAACGAGTACAAGCCACAGGCTCCTCCTATGGGCTCACGATTG 935
Query 999 TCTAGCTACGGAGTGCCTAATGGTCCATCGGCACCAGTCGATTACTCTCCTTATGATCAC 1058
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 936 TCTAGCTACGGAGTGCCTAATGGTCCATCGGCGCCAGTCGATTACTCTCCTTATGATCAC 995
Query 1059 AGGCAGTTGCAGAAGACGATGGGTGGATTGAGCTTAGAGGAAGAGAGAGCTGCTGCAGAG 1118
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 996 AGGCAGTTGCAGAAGACGATGGGTGGATTGAGCTTGGAAGAAGAGAGAGCTGCTGCAGAG 1055
Query 1119 AGGTCTGAGAGTGATTTCGGAGCTAGGCCAAACTACAGCTATGGCCGTGATTATCGCCGT 1178
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1056 AGGTCTGAGAGTGACTTCGTAGCTAGGCCAAACTACAGCTATGGCCGCGATTATCGCCGT 1115
Query 1179 GAATGTTGAGGATGGCAAAAAGTTGTTGAATTTCACAAGTGTGCGGCGTTT-CTAAGGCT 1237
||||||||||||||| ||||||||||||| ||||| ||||||| ||| ||| | ||||||
Sbjct 1116 GAATGTTGAGGATGG-AAAAAGTTGTTGACTTTCATAAGTGTGTGGCCTTTAC-AAGGCT 1173
Query 1238 TTACTTATCATCAGATTT---------GTTGGTGTTAG-A-A-CACCAGGAAATGGCTGA 1285
|||||||||||||||||| ||||||||| | | | ||||| ||||||||||
Sbjct 1174 TTACTTATCATCAGATTTACCATCCATGTTGGTGTTTGTAGATCACCAAGAAATGGCTGG 1233
Query 1286 TGACAAAA-TATGAATTTGGTGAAG----TATATGTT-ATGTCTATATGTATGTCTCGTT 1339
||| |||| |||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct 1234 TGAAAAAAATATGAATTTGGTGAAGACAGTATATCTTTATGTCTATATGTATTTCTCGTT 1293
Query 1340 TGTGAATTGATTTGTTGCTTCTTTCTAGCTGATATTCGGTGTTACCCCTTCTGTACCTTT 1399
|||||||||||||| |||||||||||||| | | | ||||||||||||
Sbjct 1294 TGTGAATTGATTTG---CTTCTTTCTAGCTG-----C--T---A----TTCTGTACCTTT 1336
Query 1400 GTACATGTTTCTAAAACATCTCTCATTTCTTTCCTTCATTCAGTTTCTTGAATC 1453
||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct 1337 GTACATGCTTCTAAAACATCTCTGATTTCTTTCCTTCTTTCAACTTCTTGAATC 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5