BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07330.1
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470753 jgi|Araly1|470753|fgenesh2_kg.1__707__AT1G07330.1 2102 0.0
Ahg344726 jgi|Araly1|344726|fgenesh1_pg.C_scaffold_4001068 292 5e-78
> Ahg470753 jgi|Araly1|470753|fgenesh2_kg.1__707__AT1G07330.1
Length=2055
Score = 2102 bits (1138), Expect = 0.0
Identities = 1501/1666 (90%), Gaps = 66/1666 (4%)
Strand=Plus/Plus
Query 1 ATGGGAATCGATGCCAAAGATGTCGGAACTCTGTTCTGGAAAATTCTCAGATTTTCCACG 60
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAATTGATGCCAAAGATGTCGGAACTCTGTTCTGGAAAATTCTCAGATTTTCCACG 60
Query 61 AACATCGTTTATA-GAA-A---C-GA-G--GAAGAAACAAGGAAGGCTGACTTAAAGCAC 111
||||||||||||| || | | || | ||||||||||| ||||||||||||||||||
Sbjct 61 AACATCGTTTATACAAACAGGTCTGAGGAAGAAGAAACAAGAAAGGCTGACTTAAAGCAC 120
Query 112 CAACGAAGTGTTCGACGAAACGCTAGAAGGAAAGTTGAAGAGGTTGGGAAAGATTGGGAC 171
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAACGAAGTGTTCGACGAAATGCCAGAAGGAAAGTTGAAGAGGTTGGGAAAGATTGGGAC 180
Query 172 TCTTCTCAGGCTAGTGAAGATGAGAGAGACAGAGTCATTTTAACAACTCTCTATGGTGAA 231
|||||||||||||| || ||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 181 TCTTCTCAGGCTAGCGAGGATGAGAGAGACAAAGTCATTTTAACAACTCTATATGGCGAA 240
Query 232 ATTCCCAATACTGCA-AAATCTCCCAAACTTC-AGAAATTCAAGAAAGATGGAGCCTTTC 289
|| ||||| |||| | ||||||||||||| || ||||| |||||||||| |||||||||
Sbjct 241 ATCCCCAACACTG-ATAAATCTCCCAAAC-TCGAGAAACCCAAGAAAGATAGAGCCTTTC 298
Query 290 TTG-TGTCTGAAGGTTTCTCCTTTGAGCCTAGCTTAGATGAAGAAACTCTTTCAACCACC 348
||| || | |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 TTGTTG-CAGAAGATTTCTCCTTTGAGCCTAGCTTAGATGAAGAAACTCTTTCAACAACC 357
Query 349 GGGAATGTTTCCGTTGTGGATCCATCGGAGAGGTTGACTAGTGGTGGTGGCGAAACCGAG 408
||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 358 GGGAA---------TGTGGATCCATCGGAGAGGTTAACGAGTGGTGGTGGCGAAACCGAA 408
Query 409 ATCGAGTGTTCATCGTCATCAGAAGGCGAAGAAGAAGAAGAAACTACACGTGAAGACAAA 468
|| || | ||||||||||||||||||| ||||||||||||| || | ||||||||||
Sbjct 409 ATAGAATCTTCATCGTCATCAGAAGGC---GAAGAAGAAGAAATTATTCATGAAGACAAA 465
Query 469 AA-G-A-TTGTAGCTTGGACAGAGGATGATCAAAAGAATTTGATGGATTTAGGAAACTCT 525
|| | | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 466 AAGGTACTTGTAGCTTGGACCGAGGATGATCAGAAGAATTTGATGGATTTAGGAAACTCT 525
Query 526 GAGATGGAACGTAACAAGAGGTTAGAGCATTTGATTACTAGAA-GAAGAATGAGGAGATT 584
|||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||
Sbjct 526 GAGATGGAACGTAACAAGAGATTAGAGCATTTGATTACAAGAAGGAA-AATGAGGAGATT 584
Query 585 AGTCCGACTTGCCGCTGAGAGTAGCTTAATGGATATGGAAGTTCCTCCAGTCTGTGTTGG 644
|||||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 585 AGTCCGACTTGCGGCTGAGAGTAGCTTAATGGATATGGAAGTTCCTTCAATATGTGTTGG 644
Query 645 ACGGAACTATTTCGGTTTGGATCAAGAAAACTATATAGTTGATGGTCTTCAAATGCCTGA 704
||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 645 ACGCAACTATTTCGGTTTGCATCAAGAAAACTATATAGTTGATGGCCTTCAAATGCCTGA 704
Query 705 ATCTGCACCTTCTGTGTTATTACCAACTAAAAACCCTTTTGATATTCCTTATGATCCACA 764
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 705 ATCTGCACCTTCTGTGTTATTACCAACTAAAAACCCCTTTGATATTCCTTATGATCCACA 764
Query 765 AGAAGAGAAGCCTAACCTCTCAGGAGATAGTTTTCAGCAAGAGTTTGCAGCCAACCCTAA 824
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 765 AGAAGAGAAGCCTAACCTCTCAGGGGATAGTTTTCAGCAGGAGTTTGCAGCCAACCCTAA 824
Query 825 TGATATCTTCTTCTGCCGCCATGAAAGCTTTTGTCGCAGAGTCTTTCCATTGGACAATCA 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 825 TGATATCTTCTTCTGCCGCCATGAAAGCTTTTGTCGCAGAGTCTTTCCATTGGAAAATCA 884
Query 885 GCTTGACACGAAATGGGAACCGTGGAAAAAG--AA--G-T-------CAATACCACAACA 932
||||||||||||||||||||||||||||||| || | | | | |||||||||
Sbjct 885 GCTTGACACGAAATGGGAACCGTGGAAAAAGTCAATTGATGGTTTGTCTAGACCACAACA 944
Query 933 AGGTAGCAATGATGGATTGGTTGGGGAGAAACATCCTGTAATGAAAGGAAAAGATCTAAC 992
|||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 945 AGGTTGCAATGATGGATTGGTTGGGGACAAACATCCTATAATGAAAGGAAAAGATCTAAC 1004
Query 993 AAGAGGAGAAGTAAATGATATGGAGTCAGAACACATGACAGAGATTGTTGTTAGTGATTC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1005 AAGAGGAGAAGTAAATGATATGGAGTCAGAACACATGACAGAGATTGTTGTGAGTGATTC 1064
Query 1053 AAACTCATTGCTTTCTCCTGAAGACAGGGAAATGAATTCTGATGTCTCAAATCAAGCATA 1112
|||||||||||||||||||| ||| ||||||| | |||| ||||||||||||||||| |
Sbjct 1065 AAACTCATTGCTTTCTCCTGTAGAAAGGGAAACGGATTCCAATGTCTCAAATCAAGCAGA 1124
Query 1113 TTTTTCTGGAACTTCTGGGAAAGGAAATGGTGATCTTCGTGTTGAAAACCCTTTAGTTGG 1172
|| |||||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1125 TTCTTCTGGAACTTCCGGGAAACCAAATGGTGATCTTCGTATTGAAAACCCTTTAGTTGG 1184
Query 1173 TTTAGTTCCTAGAAACACTGGTTCGCTTTCGAGTTCTTTAGCAGCGGAAAGGCAAAGATA 1232
|||||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||
Sbjct 1185 TTTAGTTCCTAGAAACACAGGTTCACTTTCGACTTCTTTAGCAGCCGAAAGGCAAAGATA 1244
Query 1233 CGTGGAGCATTTTGGTTATAGCTCaaaaaaaGGTCATAAGTTATCTGTAGAATCTGATCT 1292
|||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct 1245 CGTGGAGCATTTTGGTTACAGCTCAAGAAAAGGTCATAAGTTATCCGCAGAATCTGATCT 1304
Query 1293 TCAAGTTGAGGTTTCTGAAATTGGATCACCTCCCACTACAGTTGATGGGAATAATTCTTC 1352
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TCAAGTTGAGTTTTCTGAAATCGGATCACCTCCCACTACAGTTGATGGGAATAATTCTTC 1364
Query 1353 TGATGAAGAAAAATCACGTATT-GTCAACGAATCAGACATTGGGAAGGAGACGGGATTTA 1411
||||||||| ||||||| | || ||| |||||||||| | |||||||||||| | ||||
Sbjct 1365 TGATGAAGAGAAATCAC-TCTTTGTCTACGAATCAGAAACCGGGAAGGAGACGCGCTTTA 1423
Query 1412 GTGGTGAGGA----GAG------CA--------TTGTGGATAGAACTGAAGAAACTCAAA 1453
|||||||||| ||| || ||||||||||||||| |||||||||||
Sbjct 1424 GTGGTGAGGAAAATGAGGTGAAACAGAAGAGCATTGTGGATAGAACTGCAGAAACTCAAA 1483
Query 1454 TGTTACCAGTGGAGAAAGTTGATAAAGATTTAAATGAAACGATTTCTA-AGGTCTCTCCA 1512
||||||||||||||||||||| | ||| ||| |||||| || ||||| | ||||||||
Sbjct 1484 TGTTACCAGTGGAGAAAGTTGGTCAAGTTTTCGATGAAAAGAGTTCTACAA-TCTCTCCA 1542
Query 1513 GAAACTTATGTAGCCAAACAAGTTGAGGGTCTGTCTGATGGTACTGATATCAACGGAAGA 1572
|||||||||| |||||||||| |||||||||||||||||||||| || ||| | ||||
Sbjct 1543 GAAACTTATGAAGCCAAACAATTTGAGGGTCTGTCTGATGGTACAAATGTCAGTGAAAGA 1602
Query 1573 TCTGAGGAAGAAGAGAGCTCAAAATCCGGACGCTTTCCACTGGAAA 1618
|||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1603 TCTGAGGAAGAAGATAGCTCAAAATCCGGACACTTTCCACTGGAAA 1648
Score = 497 bits (269), Expect = 1e-139
Identities = 372/418 (89%), Gaps = 21/418 (5%)
Strand=Plus/Plus
Query 1653 AACAGTTCCTCACATCAATGAAGTTATTTCGAGAAGAGAAGAGG-A--AC--G----TGT 1703
|||| ||||||||||||||||||||||| | ||||||||||||| | || | |||
Sbjct 1647 AACAATTCCTCACATCAATGAAGTTATTCCAAGAAGAGAAGAGGAATCACTGGAACTTGT 1706
Query 1704 CCAAAACTTGACTGATGAGATGAAGATAAATGATGACTCTGATGAACCTGAAGCCTTTGA 1763
|||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 1707 CCAAAACTCGACTGATGAGATGAAGATAAATGACGACTCTGATGAACCTGAA-CCCTT-- 1763
Query 1764 AAGAAGAACAAATCAAGAACCCCAAGAACATTTTGGGGGAAATGATGGAGACCAATCAAC 1823
||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 1764 ------AACAAATCAAGAATCCGAAGAGCATTTTGGGGGAAATGATGGAGACCAATCAAC 1817
Query 1824 TCAAGAGTTGCAAGAACTTGTGGAACCTGAAGTTTCAAATGTGAACAATGTCACATCAGA 1883
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1818 TCAAGAGATGCAAGAACTTATTGAACCTGAAGTTTCAAATGTGAACAATGTCACATCAGA 1877
Query 1884 CGAGTCTGCTACTTCCCCAAGATCAGTGTTACCAGACATGTTGTTATCTTTAGACCAGAC 1943
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1878 CGAGTCTGCTACTTCCCCAAGATCAGTATTACCAGACATGTTGTTACCTTTAGACCAGAC 1937
Query 1944 TTATACTCTGACTTCTGAGAGTTTGGAACATACATTAGATAGTCAACCTCCGCCAGTGAT 2003
||||||||||| |||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1938 TTATACTCTGAATTCTGAGAGTTTGGAACATACATTAGATAGTCAACCTCAACTTGTCAT 1997
Query 2004 TCCATATCCGGAATCTCCACAGAATCAATCAGGTG-T-T-GATGGGAACAGTAGATGA 2058
||||||| | |||||||| || ||||||||||||| | | |||||| |||||||||||
Sbjct 1998 TCCATATGCAGAATCTCCTCATAATCAATCAGGTGGTGTTGATGGGGACAGTAGATGA 2055
> Ahg344726 jgi|Araly1|344726|fgenesh1_pg.C_scaffold_4001068
Length=2217
Score = 292 bits (158), Expect = 5e-78
Identities = 404/517 (78%), Gaps = 40/517 (8%)
Strand=Plus/Plus
Query 367 GATCCATCGGAGAGGTTGACT-AGTG--G-TGGTGGCGAAACCGAGATCGAGTGTTCATC 422
||| ||| ||||||||| | | |||| | ||||| |||| || || || ||||||||
Sbjct 535 GATTCATTGGAGAGGTT-AATAAGTGTTGATGGTGATGAAAGTGAAATTGAATGTTCATC 593
Query 423 ---GTCATCAGAAGGCGAAG-AA--GAAGAAGAA-ACTACACGTGAAGACA-A--AAAGA 472
|||||||||| |||| || ||||||||| | | || ||||| | | ||||
Sbjct 594 ATTATCATCAGAAGAAGAAGAAAGGGAAGAAGAAGA-AAGGCGCGAAGATATAGGCAAGA 652
Query 473 T--T-GTAGCTTGGACAGAGGATGATCAAAAGAATTTGATGGAT-TTAGGAAACTCTGAG 528
| | ||| | ||||||||||||||||| ||||||||||||||| || ||| | ||||||
Sbjct 653 TCGTAGTACCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGGACA-TCTGAG 711
Query 529 ATGGAACGTAACAAGAGGTTAGAGCATTTGATTACTAGAAGAAGAAT-GAGGAGATTAGT 587
|| ||| | ||||||||||||||| |||||||| |||||||||| || |||||||| |
Sbjct 712 ATTGAAAGGAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAG-ATCAAGGAGATTTTT 770
Query 588 CCGACTTGCCGCTG-AGAGTAGCTTAATGGATATGGAAGTTCCTCCAG-TCTGTGTTGGA 645
| |||||| |||| || | ||||| |||||||||||||||||| | | | ||| ||||
Sbjct 771 CTTACTTGCTGCTGAAG-GAAGCTTGATGGATATGGAAGTTCCT-CGGATTTGTATTGGT 828
Query 646 CGGAACTATTT-CGGTTTGGATCAAGAAAACTA-TATAGTTGATGGTCTTCAAATGCCTG 703
|| |||| ||| | ||| ||| ||| |||||| | | | ||||| |||| |||||
Sbjct 829 CGAAACT-TTTATGATTTCGATAAAGGAAACTACGA-AATCGATGGACTTCTCATGCC-- 884
Query 704 AA--TCTGCACCTTCTGTGTTATTACCAACTAA-AAACCCTTTTGATATTCCTTATGATC 760
|| |||||||||||||| |||||||||| || |||||| ||||| ||||||| ||||
Sbjct 885 AAGCTCTGCACCTTCTGTTTTATTACCAA-GAAGAAACCCATTTGACCTTCCTTACGATC 943
Query 761 CACAAGAAGAGAAGCCTAACCTCTCAGGAGATAGTTTTCAGCAAGAGTTTGC--AGCC-A 817
| | |||||||| || ||| | |||||||||||||||||||||||||||| || | |
Sbjct 944 CTCTGGAAGAGAAACCGAACTTGACAGGAGATAGTTTTCAGCAAGAGTTTGCTGAGACTA 1003
Query 818 ACCCTAATGATATCTTCTTCTGCCGCCATGAAAGCTT 854
||| || ||||||||||| ||||||||||| |||||
Sbjct 1004 ACCGGAAAGATATCTTCTTTTGCCGCCATGAGAGCTT 1040
Score = 178 bits (96), Expect = 2e-43
Identities = 135/153 (88%), Gaps = 5/153 (3%)
Strand=Plus/Plus
Query 81 GGAAGAAACAAG-GAAGGCTGACTTAAAGCACCAACGAAGTGTTCGACGAAACGCTAGAA 139
||||| ||| || ||||||| | ||||||||||||| ||||||||||||||| |||||||
Sbjct 286 GGAAG-AAC-AGAGAAGGCTAAGTTAAAGCACCAACAAAGTGTTCGACGAAATGCTAGAA 343
Query 140 GGAAAGTTGAAGAGGTTGGGAAAGATTGGGACTCTTCTCAGGCTAGTGAAGATGAGAGAG 199
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 344 GAAAAGTTGAAGAGGTTGGGAAAGATTGGGATTCTTCTCAGGCTAGTGAGGATGAGAGAG 403
Query 200 ACAGAG-TCATTTTAACAACTCTCTATGGTGAA 231
| || | ||||| || ||||||||||| |||
Sbjct 404 GTA-AGGTTATTTTGACTACTCTCTATGGGGAA 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77399377840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5