BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07340.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334030 jgi|Araly1|334030|fgenesh1_pg.C_scaffold_1000595 2388 0.0
> Ahg334030 jgi|Araly1|334030|fgenesh1_pg.C_scaffold_1000595
Length=1497
Score = 2388 bits (1293), Expect = 0.0
Identities = 1432/1500 (95%), Gaps = 6/1500 (0%)
Strand=Plus/Plus
Query 52 ATGGCTGTTGGTTCGATGAATGTCGAAGAAGGCACTAAAGCTTTTCCTGCGAAGCTGACA 111
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1 ATGGCTGTTGGTTCGATGAATGTCGAAGAAGGCACTAAAGCTTTTCCTGCAAAACTGACT 60
Query 112 GGTCAAGTCTTTCTTTGCTGTGTCATTGCTGCTGTTGGTGGTCTCATGTTTGGTTACGAC 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCAAGTCTTTCTTTGCTGTGTCATTGCTGCTGTTGGTGGTCTCATGTTTGGTTACGAC 120
Query 172 ATCGGAATCTCAGGAGGTGTAACGAGTATGGACACTTTCTTGTTAGATTTTTTCCCACAC 231
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCGGAATCTCAGGAGGTGTGACGAGTATGGACACTTTCTTGTTAGATTTTTTCCCACAC 180
Query 232 GTGTACGAGAAGAAACACAGAGTACACGAAAACAACTACTGCAAATTCGATGACCAGCTC 291
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGTACGAGAAGAAACACAGGGTACACGAAAACAACTACTGCAAATTCGATGACCAGCTC 240
Query 292 TTGCAGTTGTTCACTTCCTCACTCTACTTGGCTGGAATCTTCGCTAGCTTTATTTCTTCC 351
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 241 TTGCAGTTGTTCACTTCGTCACTCTACTTGGCTGGAATCTTTGCTAGCTTTATTGCTTCC 300
Query 352 TATGTTTCTAGGGCTTTTGGAAGAAAACCCACAATCATGCT-CGCCTCCATCTTCTTCCT 410
|||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 301 TATGTTTCCAGGGCTTTTGGAAGAAAACCCACGATCAT-CTCCGCCTCCATCTTCTTCCT 359
Query 411 CGTCGGTGCTATCCTCAACTTATCTGCCCAAGAA-CTCGGCATGTTGATCGGTGGTCGTA 469
|||||| ||||| |||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 360 CGTCGGGGCTATTCTCAACTTATCTGCCCAA-AACCTGGGCATGTTGATCGGTGGTCGTA 418
Query 470 TTCTTCTCGGCTTTGGTATCGGTTTCGGTAACCAGACCGTTCCATTGTTCATCTCAGAGA 529
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 TTCTTCTCGGCTTCGGTATCGGTTTCGGTAACCAGACCGTCCCATTGTTCATCTCAGAGA 478
Query 530 TTGCTCCGGCGAGATACAGAGGAGGACTAAACGTCATGTTCCAGTTTCTCATCACCATTG 589
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGCTCCGGCGAAATACAGAGGAGGACTAAACGTCATGTTCCAGTTTCTCATCACCATTG 538
Query 590 GAATCTTAGCAGCAAGTTATGTGAACTACTTAACTTCCACGTTGAAAAACGGCTGGAGAT 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAATCTTAGCAGCAAGTTATGTGAACTACTTAACTTCCACGTTGAAAAACGGCTGGAGAT 598
Query 650 ATTCTCTCGGTGGTGCTGCTGTCCCCGCTTTAATCCTCTTGATAGGATCCTTCTTTATCC 709
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTCTCTCGGTGGTGCAGCTGTCCCCGCTTTAATCCTCTTGATAGGATCCTTCTTTATCC 658
Query 710 ACGAGACTCCGGCTAGTCTCATCGAGCGCGGTAAAGACGAAAAGGGGAAGCAAGTCCTGA 769
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 ACGAGACTCCAGCTAGTCTCATCGAGCGCGGTAAAGACGAAAAAGGGAAGCAAGTCCTGA 718
Query 770 GGAAGATCAGAGGCATTGAAGATATTGAGCTCGAGTTCAATGAGATCAAATACGCAACAG 829
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAAAGATCAGAGGCGTTGAAGATATTGAGCTCGAGTTCAATGAGATCAAATACGCAACAG 778
Query 830 AGGTAGCGACAAAGGTGAAAAGCCCATTCAAAGAACTCTTCACCAAGAGTGAGAACAGAC 889
|||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 AGGTTTCGACAAAAGTGAAAAGCCCATTCAAAGAACTCTTCACCAATCGTGAGAACAGAC 838
Query 890 CACCATTGGTGTGTGGAACGTTACTTCAGTTCTTTCAACAGTTCACCGGTATCAACGTGG 949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 839 CACCATTGGTGTGTGGAACGTTACTTCAGTTCTTTCAACAGTTCACCGGTATCAACGTTG 898
Query 950 TTATGTTCTACGCTCCAGTTTTGTTCCAGACGATGGGTAGTGGTGACAACGCTTCTCTGA 1009
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 TTATGTTCTACGCTCCAGTTTTGTTCCAGACGATGGGTAGTGGTAACAACGCTTCTCTGA 958
Query 1010 TCTCTACTGTTGTCACCAATGGTGTGAACGCAATCGCTACAGTTATCTCTCTTTTAGTGG 1069
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||
Sbjct 959 TCTCTACTGTTGTCACCAATGGTGTGAACGCAGTCGCAACAATTATCTCTCTTGTAATGG 1018
Query 1070 TTGATTTCGCCGGTAGAAGGTGTCTTCTGATGGAAGGAGCTCTCCAGATGACCGCTACAC 1129
||||||| |||||||||| |||||| || | ||||||||| ||||||||||||||||||
Sbjct 1019 TTGATTTGGCCGGTAGAAAATGTCTTTTGGTCGAAGGAGCTATCCAGATGACCGCTACAC 1078
Query 1130 AGATGACAATTGGAGGCATTCTCTTAGCTCACTTGAAGCTAGTTGGTCCTATTACTGGCC 1189
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1079 AGATGACAATTGGAGGCATTCTCTTAGCTCACTTGAAACTGGTTGGTCCTATTACTGGCC 1138
Query 1190 ATGCCGTGCCGCTGATTGTATTGATCCTCATCTGCGTATACGTGTCTGGATTTGCATGGT 1249
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1139 ATGCCGTGCCGCTGATTGTATTGGTCCTCATCTGCATATACGTGTCTGGATTTGCATGGT 1198
Query 1250 CTTGGGGTCCATTGGGATGGCTTGTTCCGTCTGAGATCTACCCTCTTGAAGTGAGAAATG 1309
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 CTTGGGGACCATTGGGATGGCTTGTTCCGTCTGAGATCTATCCTCTTGAAGTGAGAAATG 1258
Query 1310 CTGGTTACTTCTGTGCGGTGGCGATGAACATGGTCTGCACTTTCATCATTGGACAGTTCT 1369
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CAGGTTACTTCTGTGCTGTAGCGATGAACATGGTCTGCACTTTCATCATTGGACAGTTCT 1318
Query 1370 TCTTGTCTGCTCTCTGCAGATTCAGATCATTA-TTGTTCTTCTTCTTCGGAATAATGAAC 1428
||||||| ||||| |||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 1319 TCTTGTCGGCTCTATGCAGATTCAGATCAT-ACTTGTTCTTCTTCTTCGGAGTAATGAAC 1377
Query 1429 ATTATCATGGGACTATTTGTCGTGTTTTTTCTTCCCGAAACCAAAGGTGTTCCTATTGAG 1488
||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 1378 ATTGCCATGGGACTATTTGTCGTGTATTATCTTCCCGAAACCAAAGGTGTTCCTGTTGAG 1437
Query 1489 GAAATGGCCGAGAAGCGTTGGAAAACGCACCCGCGTTGGAAGAAATATTTCAAAGACTAG 1548
||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1438 GAAATGGCCGAGAAGCGTTGGAAGACACACTCGCGTTGGAAGAAATATTTCAAAGACTAG 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5