BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07370.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919461 jgi|Araly1|919461|scaffold_100742.1 1363 0.0
Ahg481872 jgi|Araly1|481872|fgenesh2_kg.4__932__AT2G29570.1 859 0.0
Ahg934259 jgi|Araly1|934259|scaffold_402247.1 167 2e-40
Ahg926461 jgi|Araly1|926461|scaffold_202022.1 161 8e-39
> Ahg919461 jgi|Araly1|919461|scaffold_100742.1
Length=834
Score = 1363 bits (738), Expect = 0.0
Identities = 803/835 (96%), Gaps = 2/835 (0%)
Strand=Plus/Plus
Query 46 TAATATCT-AAGACGACGAAATGTTGGAGCTACGTCTTGTTCAGGGCTCGTTGTTGAAGA 104
|||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TAATATCTAAAGACGACGAGATGTTGGAGCTACGACTTGTTCAGGGCTCGTTGTTGAAGA 60
Query 105 AGGTTCTAGAATCAATCAAAGATCTGGTGAACGATGCGAATTTCGACTGCTCCAGCACTG 164
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AGGTTCTAGAATCAATCAAGGATCTGGTGAACGATGCGAATTTCGACTGCTCCAGTACTG 120
Query 165 GGTTCTCACTCCAAGCTATGGATTCGAGTCACGTTGCTCTGGTGTCTCTCTTGCTAAGAT 224
| ||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 121 GCTTCTCGCTGCAAGCTATGGATTCGAGTCACGTGGCGCTGGTGTCTCTCTTGCTAAGAT 180
Query 225 CCGAAGGCTTCGAACACTACAGATGCGACAGGAATCTCTCCATGGGGATGAATCTCGGCA 284
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGAAGGCTTCGAGCACTACAGATGCGACAGGAATCTCTCCATGGGGATGAATCTCGGCA 240
Query 285 ACATGTCGAAGATGCTCAAATGCGCCGGAAATGATGACATCATCACCATCAAGGCTGATG 344
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 ACATGTCCAAGATGCTCAAATGTGCCGGAAATGATGACATCATCACCATCAAGGCTGATG 300
Query 345 ACGGCGGCGACACCGTTACCTTCATGTTTGAGAGCCCCACGCAAGACAAGATTGCTGATT 404
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 301 ACGGCGGCGACACCGTCACCTTCATGTTCGAAAGCCCCACGCAAGACAAGATTGCCGATT 360
Query 405 TTGAGATGAAGTTGATGGATATAGACAGTGAACATCTGGGAATACCTGATGCTGAGTACC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGAGATGAAGTTGATGGATATAGACAGTGAACATCTGGGAATACCTGATGCTGAGTACC 420
Query 465 ACTCAATCGTGAGGATGCCTTCCAATGAGTTTTCCAGGATTTGCAAAGATCTCAGTAGCA 524
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTCAATCGTTAGGATGCCTTCGAATGAGTTTTCCAGGATTTGCAAAGATCTCAGTAGCA 480
Query 525 TTGGTGACACAGTTGTGATCTCTGTGACTAAAGAAGGCGTGAAGTTTTCTACTGCCGGTG 584
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 481 TTGGTGATACAGTTGTGATCTCTGTGACTAAAGAAGGGGTGAAGTTTTCCACTGCCGGTG 540
Query 585 ACATTGGAACCGCTAACATTGTGCTCAGGCAGAACACAACTGTAGACAAGCCGGAAGATG 644
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATATTGGAACCGCTAACATTGTGCTCAGGCAGAACACAACTGTAGACAAGCCGGAAGATG 600
Query 645 CAATTGTGATAGAGATGAAGGAGCCAGTGTCTCTCTCATTTGCCCTGAGGTACATGAATT 704
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 601 CAATTGTGATAGAGATGAAGGAACCAGTGTCACTCTCATTTGCCCTGAGGTACATGAATT 660
Query 705 CCTTCACAAAGGCAACTCCATTGTCAGACACAGTGACAATCAGCTTATCGTCGGAGTTGC 764
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 661 CCTTCACAAAGGCAACTCCATTGTCAGACACTGTGACAATCAGCTTATCGTCAGAGTTGC 720
Query 765 CAGTGGTTGTGGAGTATAAGGTTGCTGAGATGGGTTACATTCGTTACTACTTGGCTCCTA 824
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 721 CAGTGGTTGTGGAGTATAAGGTAGCTGAGATGGGTTACATTCGTTACTACTTGGCCCCTA 780
Query 825 AGATTGAAGAAGAAGAAGACACTAATCCCTAAGACCCCTTTTATATCCACAATTT 879
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 AGATTGAAGAAGAAGAAGACACTAATCCCTAAGACCCCTTTC-TATCCACAATTT 834
> Ahg481872 jgi|Araly1|481872|fgenesh2_kg.4__932__AT2G29570.1
Length=1121
Score = 859 bits (465), Expect = 0.0
Identities = 690/800 (86%), Gaps = 9/800 (1%)
Strand=Plus/Plus
Query 62 GAA-ATGTTGGAGCTACGTCTT-GTTCAGGGCTCGT-TGTTGAAGAAGGTTCTAGAATCA 118
||| ||||||||||| ||| || ||||| || || | | | ||||||||||||||| |
Sbjct 88 GAAGATGTTGGAGCTTCGT-TTAGTTCAAGGTTC-TCTACTAAAGAAGGTTCTAGAAGCG 145
Query 119 ATCAAAGATCTGGTGAACGATGCGAATTTCGACTGCTCCAGCACTGGGTTCTCACTCCAA 178
|||||||||| |||||||||||||| |||||||| || ||||| |||||||| || |||
Sbjct 146 GTCAAAGATCTTGTGAACGATGCGAACTTCGACTGTTCAAGCACAGGGTTCTCGCTTCAA 205
Query 179 GCTATGGATTCGAGTCACGTTGC-TCTGGTGTCTCTCTTGCTAAGATCCGAAGGCTTCGA 237
|||||||||||||||||||| || | |||||||||| ||||| ||||| ||||| || ||
Sbjct 206 GCTATGGATTCGAGTCACGTCGCGT-TGGTGTCTCTTTTGCTTAGATCTGAAGGTTTTGA 264
Query 238 ACACTACAGATGCGACAGGAATCTCTCCATGGGGATGAATCTCGGCAACATGTCGAAGAT 297
|| || || ||||| |||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 265 GCATTATAGGTGCGATAGGAATCTTTCCATGGGGATGAATCTTGGTAACATGTCTAAGAT 324
Query 298 GCTCAAATGCGCCGGAAATGATGACATCATCACCATCAAGGCTGATGACGGCGGCGACAC 357
||| ||||| || ||||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 325 GCTGAAATGTGCTGGAAATGATGATATCATCACTATCAAGGCTGATGATGGTAGCGACAC 384
Query 358 CGTTACCTTCATGTTTGAGAGCCCCACGCAAGACAAGATTGCTGATTTTGAGATGAAGTT 417
|| || |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 385 TGTGACGTTCATGTTTGAGAGTCCCACGCAAGACAAGATTGCTGACTTTGAGATGAAGCT 444
Query 418 GATGGATATAGACAGTGAACATCTGGGAATACCTGATGCTGAGTACCACTCAATCGTGAG 477
||||||||| |||||||| ||| | ||||||||||||||||||||||||||||| |||||
Sbjct 445 GATGGATATTGACAGTGAGCATTTAGGAATACCTGATGCTGAGTACCACTCAATTGTGAG 504
Query 478 GATGCCTTCCAATGAGTTTTCCAGGATTTGCAAAGATCTCAGTAGCATTGGTGACACAGT 537
|||||||| ||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 505 AATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGATCTCAGTAGTATTGGTGATACAGT 564
Query 538 TGTGATCTCTGTGACTAAAGAAGGCGTGAAGTTTTCTACTGCCGGTGACATTGGAACCGC 597
||||||||||||||| |||||||| || |||||||| || || ||||| || || || ||
Sbjct 565 TGTGATCTCTGTGACCAAAGAAGGGGTCAAGTTTTCAACAGCAGGTGATATCGGGACAGC 624
Query 598 TAACATTGTGCTCAGGCAGAACACAACTGTAGACAAGCCGGAAGATGCAATTGTGATAGA 657
|||||||| ||||||||||| || ||||| ||||| || |||||||| |||||||||||
Sbjct 625 AAACATTGTACTCAGGCAGAATACTACTGTCGACAAACCTGAAGATGCTATTGTGATAGA 684
Query 658 GATGAAGGAGCCAGTGTCTCTCTCATTTGCCCTGAGGTACATGAATTCCTTCACAAAGGC 717
|||||| ||||| || || || |||||||| ||||||||||||| ||||||||||||||
Sbjct 685 GATGAACGAGCCTGTTTCGCTTTCATTTGCATTGAGGTACATGAACTCCTTCACAAAGGC 744
Query 718 AACTCCATTGTCAGACACAGTGACAATCAGCTTATCGTCGGAGTTGCCAGTGGTTGTGGA 777
||||||||||| || || ||||| ||||| || || || ||||| || || || |||||
Sbjct 745 TACTCCATTGTCGGAAACTGTGACGATCAGTTTGTCCTCTGAGTTACCGGTTGTGGTGGA 804
Query 778 GTATAAGGTTGCTGAGATGGGTTACATTCGTTACTACT-TGGCTCCTAAGATTGAAGAAG 836
||| |||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||
Sbjct 805 GTACAAGGTTGCTGAGATGGGTTACATTCGATACTA-TCTGGCGCCTAAGATTGAAGAAG 863
Query 837 AAGAAGACACTAATCCCTAA 856
||||||||||||| ||||||
Sbjct 864 AAGAAGACACTAAGCCCTAA 883
> Ahg934259 jgi|Araly1|934259|scaffold_402247.1
Length=349
Score = 167 bits (90), Expect = 2e-40
Identities = 118/132 (89%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 442 GGGAATACCTGATGCTGAGTACCACTCAATCGTGAGGATGCCTTCCAATGAGTTTTCCAG 501
||| |||| || |||||||||||||||||| ||||| |||||||| ||| ||||||||
Sbjct 104 GGGGATACATGCTGCTGAGTACCACTCAATTGTGAGAATGCCTTCTGGTGAATTTTCCAG 163
Query 502 GATTTGCAAAGATCTCAGTAGCATTGGTGACACAGTTGTGATCTCTGTGACTAAAGAAGG 561
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 164 GAAATGCAAAGATCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGG 223
Query 562 CGTGAAGTTTTC 573
|||||||||||
Sbjct 224 GGTGAAGTTTTC 235
> Ahg926461 jgi|Araly1|926461|scaffold_202022.1
Length=308
Score = 161 bits (87), Expect = 8e-39
Identities = 117/132 (89%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 442 GGGAATACCTGATGCTGAGTACCACTCAATCGTGAGGATGCCTTCCAATGAGTTTTCCAG 501
||| |||| || |||||||||||||||||| ||||| ||||||| ||| ||||||||
Sbjct 104 GGGGATACATGCTGCTGAGTACCACTCAATTGTGAGAATGCCTTTTGGTGAATTTTCCAG 163
Query 502 GATTTGCAAAGATCTCAGTAGCATTGGTGACACAGTTGTGATCTCTGTGACTAAAGAAGG 561
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 164 GAAATGCAAAGATCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGG 223
Query 562 CGTGAAGTTTTC 573
|||||||||||
Sbjct 224 GGTGAAGTTTTC 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5