BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07390.3
Length=3418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470760 jgi|Araly1|470760|fgenesh2_kg.1__714__AT1G07390.1 2270 0.0
Ahg910406 jgi|Araly1|910406|Al_scaffold_0001_660 370 4e-101
Ahg919978 jgi|Araly1|919978|scaffold_101259.1 122 1e-26
> Ahg470760 jgi|Araly1|470760|fgenesh2_kg.1__714__AT1G07390.1
Length=3070
Score = 2270 bits (1229), Expect = 0.0
Identities = 1384/1460 (95%), Gaps = 5/1460 (0%)
Strand=Plus/Plus
Query 1813 AGGGTTCTGAAGCTCTCCAACAATCAATTACAGGGGAAAATATTTTCGAAGCATGCAAAT 1872
|||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1612 AGGGTTATGAAGCTCTCCAACAATCAATTACAGGGGAAAATATTTCCTAAGCATGCAAAC 1671
Query 1873 CTTACTGGTTTAGTTGGGCTTTTTCTTGATGGCAACAATTTTACTGGGAGTCTTGAAGAG 1932
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1672 CTTACTGGTTTAGTAGGGCTTTTTCTTGATGGCAACAATTTTACTGGGAGTCTCGGAGAA 1731
Query 1933 GGTTTATTGAAGTCAAAGAATCTTACTCTTTTAGACATATCAGATAATAGGTTTTCGGGC 1992
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1732 GGTCTATTGAAGTCAAAGAATCTAACTCTTTTAGACATATCAGATAATAGGTTTTCGGGC 1791
Query 1993 ATGCTTCCACTTTGGATTGGTAGGATATCAAGGCTTTCCTACCTATACATGAGTGGTAAT 2052
|||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1792 ATGCTTCCGCGTTGGATTGGTAGGATGTCATGGCTTTCCTACCTATACATGAGTGGTAAT 1851
Query 2053 CAGCTAAAAGGTCCTTTCCCTTTTCTACGACAGAGTCCTTGGGTTGAGGTTATGGACATC 2112
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1852 CAGCTAAAAGGTCCTTTCCCTTTTCAACAACAGAGTCCTTGGGTTGAGGTTATGGACATC 1911
Query 2113 TCACACAATAGCTTCTCTGGTTCGATACCAAGGAATGTGAATTTTCCATCTCTCAGAGAA 2172
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1912 TCACACAATAGCTTCTCTGGTTTGATACCAAGGAATGTGAATTTTCCATCTCTCAGAGAA 1971
Query 2173 CTAAGACTACAAAACAATGAGTTTACGGGTTTAGTTCCGGGAAATTTATTCAAGGCTGCG 2232
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||
Sbjct 1972 TTAAGACTACAAAACAATGAGTTTATGGGTTCAGTTCCGGGCAATTTATTCAATGCTGCG 2031
Query 2233 GGATTAGAAGTGCTTGATTTGCGGAACAACAATTTTTCTGGAAAGATACTGAACACTATT 2292
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2032 GGATTAGAAGTGCTTGATTTGCGTAACAACAACTTTTCTGGAAAGATACTGAACACTATT 2091
Query 2293 GACCAGACATCTAAGTTACGTATTCTTCTTCTACGGAATAACAGCTTTCAAACTTATATC 2352
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 2092 GACCAGACATCTAAGTTACGCATTCTTCTTCTACGGAATAACAGCTTTCGAACTTATATT 2151
Query 2353 CCTGGGAAAATATGTCAGCTAAGTGAAGTTGGTCTGTTAGACTTGTCTCACAATCAATTC 2412
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2152 CCTGGGAAAATATGTCAGCTAAGTGAAGTTGGTCTCTTGGACTTGTCTCACAATCAATTC 2211
Query 2413 AGAGGCCCCATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAGAGCAGAATGACCGT 2472
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2212 AGAGGCCCCATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAGAGCAGAATAACGGT 2271
Query 2473 ACCATGTCACTTGTTGCAGATTTTGACTTCTCATACATTACATTCTTGCCACATTGTCAA 2532
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2272 ACCATGTCACTTGTTGCAGATTTTGACTTCTCAGACATTACATTCTTGCGACATTGTCAT 2331
Query 2533 TATGGATCACATCTTAACTTGGATGATGGTGTCAGGAATGGTTATCAACCAAAACCAGCA 2592
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 TATGCATCACATCTTAACTTGGATGATGGTGTCAGGAATGGTTATCAACCAAAACCAGCA 2391
Query 2593 ACCGTAGTGGATTTTTTAACGAAAAGCAGATATGAGGCGTATCAAGGTGATATTCTCCGC 2652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2392 ACCGTAGTGGATTTTTTAACGAAAAGCAGATATGAGGCGTATCAAGGTGATATTCTCCGC 2451
Query 2653 TATATGCATGGTCTGGATTTGTCGAGCAACGAACTATCGGGTGAAATTCCAATCGAGATT 2712
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2452 TATATGCATGGTCTGGATTTGTCGAGCAACGAACTATCGGGTGAAATTCCAATTGAGATT 2511
Query 2713 GGAGATCTTCAGAATATCAGGTCCCTGAATTTGTCAAGTAACCGCCTCACAGGCTCCATA 2772
||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 2512 GGAGATCTTGAGAATATCAGATCCCTGAATTTGTCAAGCAATCGCCTCACAGGCTCCATA 2571
Query 2773 CCAGATAGCATTTCAAA-GCTGAAGGGCTTAGAGAGTCTTGATCTATCCAACAATAAGCT 2831
|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2572 CCAGATAGCATT-CAAAAGCTGAAGGGCTTAGAGAGTCTTGATCTATCCAATAATAAGCT 2630
Query 2832 AGATGGAAGTATCCCTCCTGCGCTAGCCGATCTCAACAGTTTAGGATACTTGAATATCTC 2891
||||||| ||||||||| |||||||||||||||||||||||||||||| || || ||
Sbjct 2631 CTATGGAAGCATCCCTCCTATGCTAGCCGATCTCAACAGTTTAGGATACTTTAACATTTC 2690
Query 2892 ATATAACAATTTATCAGGTGAAATCCCTTTCAAAGGCCATCTTGTTACCTTTGACGAGAG 2951
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2691 ATATAACAATTTATCAGGTGAAATCCCTTTCAAAGGCCATCTTGTAACCTTTGACGAGAG 2750
Query 2952 GAGTTACATAGGCAACGCTCATCTCTGTGGACTTCCTACAAATAAAAATTGCATCTCCCA 3011
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2751 GAGCTACATAGGCAATGCTCATCTATGTGGACTTCCTACAAATAAAAATTGCATCTCCCA 2810
Query 3012 GAGAGTCCCTGAGCCACCAAGTGTGTCAACGCATGCCAAAGAGGAAGAAAATGAAGAAGA 3071
|||||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||
Sbjct 2811 GAGAGTCCCTGAGCCACCAAGTGTACCAACGCAGGCCAAAGAGGAAGACAACGAAGAAGA 2870
Query 3072 AGGTAATGTGATAGACATGGTGTGGTTTTACTGGACTTGTGCTGCAGTCTACATATCTAC 3131
|||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||
Sbjct 2871 AGGTGATGTGATAGACATGGTGTGGTTTTATTGGACTTGTGTTGCAGTCTACATAGCTAC 2930
Query 3132 ATCCTTGGCATTGTTTGCTTTCCTCTACATAGACTCACGATGGTCCCGAGAATGGTTTTA 3191
||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 2931 ATCCTTGGCCTTGTTTGCTTTCCTCTGCATAGACACACGATGGTCCCGAGAATGGTTTTA 2990
Query 3192 TCGTGTAGATCTATGCGTTCATCATATTCTACAGTTCAAGCGTTCCTC-AGTCTGCAACT 3250
||||||||||||||||||||||||| | |||| ||||||||||||||| | |||||||||
Sbjct 2991 TCGTGTAGATCTATGCGTTCATCATCTCCTACGGTTCAAGCGTTCCTCTA-TCTGCAACT 3049
Query 3251 GATTCTGTGGATTAGCCAAG 3270
||||| |||| | ||||||
Sbjct 3050 GATTCCGTGGCTC-GCCAAG 3068
Score = 1197 bits (648), Expect = 0.0
Identities = 783/848 (92%), Gaps = 10/848 (1%)
Strand=Plus/Plus
Query 4 GGTTTGTTGCAGCTCAAGTCGTATCTCAAGAATCTCGTTGATGCCgaagaagaagaagaa 63
||||| ||||| |||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 4 GGTTTATTGCAACTCAAGTCGTATCTCAAGAATCTCCTTGACGCTGAAGAAGAAGAAGAA 63
Query 64 gaagGACTTAGTATTCTCAAGTCATGGACTCATCATGAAGG-TGATTGTTGCCGT-TGGG 121
|||||||||||||||||||||||||||||||||||| || | ||||||||||| | ||||
Sbjct 64 GAAGGACTTAGTATTCTCAAGTCATGGACTCATCAT-AATGATGATTGTTGCC-TCTGGG 121
Query 122 AGAGAGTAAAGTGTAGTGATGCTATTAATGGCCACGTCATCGGTCTCTCACTGGATAGAC 181
||||||||||||||||||| |||| || ||| |||||||||| |||||||||||||||||
Sbjct 122 AGAGAGTAAAGTGTAGTGACGCTACTAGTGGTCACGTCATCGATCTCTCACTGGATAGAC 181
Query 182 TCGTACCGGTCGCATTTGAGTCGCAAACTCGGTCTTTAAATCTGTCTTTGCTTCATAGTT 241
|| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 182 TCATACCGGTCGCATTTGAGTCGCAAATTCGGACTTTAAACCTGTCTTTGCTTCATAGTT 241
Query 242 TTCCTCAACTCCAAAGCCTTAATCTTTCGTGGAATTGGTTCACTAATTTGTCTGATCACT 301
|||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 242 TTCCTCAACTCCAAAGCCTTAACCTCTCGTGGAATTGGTTTACTAATTTGTCTGATCACG 301
Query 302 TCCTTGGTTTTAAGAGCTTTGGGACACTAGATAAGCTCACTACCTTAGATTTCTCCCATA 361
||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||| |
Sbjct 302 TCCTTGGTTATAAGAGCTTTGGGAGACTAGAGAAGCTCACCACCATAGATTTCTCCCACA 361
Query 362 ATATGTTCGACAACAGTATCGTCCCGTTT-TTAAATGCTGCGACATCGATTAGGAGTCTA 420
||||||||||||||||||| || || ||| |||| ||||||||||||| |||||| ||||
Sbjct 362 ATATGTTCGACAACAGTATTGTTCC-TTTCTTAAGTGCTGCGACATCGGTTAGGAATCTA 420
Query 421 CATCTTGAGTCTAATTACATGGAAGGTGTCTTTCCTCCTCAAGAACTTTCAAACATGACA 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 CATCTTGAGTCTAATTACATGGAAGGTGTCTTTCCTCCTCAAGAACTTGCAAACATGACA 480
Query 481 AACTTGAGAGTGTTAAACTTGAAGGACAACAGTTTCAGCTTCTTATCTTCTCAAGGTTTA 540
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 AACTTGAGAGTGTTACACTTGAAGGACAACAGTTTCAGCTTCTTATCTGCTCAAGGTTTA 540
Query 541 ACAGATTTCAGAGATTTGGAAGTACTGGATCTCAGTTTCAATGGTGTCAATGACTCTGAG 600
|| |||||||||| || |||||||||||||||||||||||||||||||| | |||||||
Sbjct 541 ACCTATTTCAGAGAGTTAGAAGTACTGGATCTCAGTTTCAATGGTGTCAACGTCTCTGAG 600
Query 601 GCTAGTCA-TAGTTTAAGTACGGCGAAACTGAAAACACTAGATCTTAATTTCAATCCGTT 659
|||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GCTAGTCACTGGTTTA-GTACGGCGAAACTGAAAACACTAGATCTTAGTTTCAATCCGTT 659
Query 660 GTCAGATTTTTCTCAACTTAAAGGTTTAGAAAGCCTCCAAGAGTTACAAGTCTTGAAATT 719
|||||| ||||||||||||||||||||||||| |||| |||||||| |||||||| |||
Sbjct 660 TTCAGATATTTCTCAACTTAAAGGTTTAGAAAGTCTCCGAGAGTTACTAGTCTTGATATT 719
Query 720 ACGAGGAAATAAATTCAACCACACGCTATCTACTCATGTACTGAAAGATCTTAAAATGTT 779
|||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 720 ACGAGGCAATAAATTCAACCACACGCTATCTACTCATGCACTGAAAGATCTGAAAAAGTT 779
Query 780 GCAAGAACTGGATCTCAGTGACAATGGGTTCACAAATTTAGATCATGGCCGAGACGTTGA 839
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||
Sbjct 780 GCAAGAACTGGATCTCAGTGACAATGGGTTCACAAATTTGGATCTTGGCCGAGAAGT-GA 838
Query 840 TGAG-AGT 846
||| |||
Sbjct 839 GGAGGAGT 846
Score = 1024 bits (554), Expect = 0.0
Identities = 603/627 (96%), Gaps = 2/627 (0%)
Strand=Plus/Plus
Query 1051 TATTTAGGGATTTGCAGACTAATGAAACTCAGGGAGCTGGATTTGAGCAGCAATGCTTTA 1110
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 997 TATTTAGGGATTTGCAGACTAATGAAACTCAGGGAACTGGATTTGAGCAGCAATGCTTTA 1056
Query 1111 ACAAGTCTACCTTATTGTTTGGGTAACTTAACGCATCTTCGAACTCTTGATCTATCGAAC 1170
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ACAAGTCTACCTTCTTGTTTGGGTAACTTAACGCATCTTCGAACTCTTGATCTATCGAAC 1116
Query 1171 AACCAATTGAATGGAAACCTGTCTTCCTTTGTGTCTGGTCTACCATCAGTGCTTGAGTAC 1230
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1117 AACCAATTGAATGGAAACCTGTCTTCCTTTGTGTCTGGTCTACCAACAGTTCTTGAGTAC 1176
Query 1231 TTGTCGCTGCTTGATAATAACTTCGACGGTTCGTTCTTGTTCAACTCACTGGTCAATCAA 1290
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1177 TTGTCGCTGCTTGATAATAACTTCAACGGTTCGTTCTTATTCAACTCACTGGTCAATCAA 1236
Query 1291 ACAAGACTCACAGTATTCAAATTGTCATCAAAAGTTGGTGTGATCCAAGTTCAGACTGAG 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1237 ACAAGACTCACAGTATTCAAATTGTCATCAAAAGTTGGTGTGATCCAAGTTCAGACGGAG 1296
Query 1351 AGTTCATGGGCTCCATTGTTTCAATTGAAGATGTTATATTTATCGAATTGCAGTCTTGGC 1410
||||| |||||||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 1297 AGTTCCTGGGCTCCATTGTTTCAATTGAAGATGTTACATTTGTCGAATTGCAATCTTGGC 1356
Query 1411 AGCACAATGCTCGG-CTTTCTCGTGCATCAGCGTGACTTGTGCTTCGTTGATCTCTCTCA 1469
|| ||||||| | | ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1357 AGTACAATGC-CTGTCTTTCTCGTGCATCAGCATGACTTGTGCTTCGTTGATCTCTCTTA 1415
Query 1470 TAACAAGTTGACAGGAACATTCCCGACTTGGCTTGTGAAGAATAACACAAGGCTGCAGAC 1529
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1416 TAACAAGTTGACAGGAACATTCCCAACGTGGCTTGTGAAGAATAACACAAGGCTGCAGAC 1475
Query 1530 TATTTTACTAAGTGGGAACTCATTGACAAAGCTTCAACTACCTATTCTTGTTCATGGCTT 1589
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1476 TATTTTACTAAATGGGAACTCATTGACAAAGCTTCAACTACCTATGCTTGTTCACGGCTT 1535
Query 1590 GCAAGTTCTCGATATCTCGAGTAATATGATATATGATTCGATTCAAGAGGACATAGGGAT 1649
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1536 GCAAGTTCTCGATATCTCGAGTAATATGATATATGATTCGATTCAAGAAGACATAGGGAT 1595
Query 1650 GGTGTTTCCAAACCTGAGGTTTATGAA 1676
||||||||||||||||||| |||||||
Sbjct 1596 GGTGTTTCCAAACCTGAGGGTTATGAA 1622
> Ahg910406 jgi|Araly1|910406|Al_scaffold_0001_660
Length=1227
Score = 370 bits (200), Expect = 4e-101
Identities = 512/660 (78%), Gaps = 32/660 (5%)
Strand=Plus/Plus
Query 1995 GCTTCCACTTTGGATTGGTAGGATATCAAGGCTTTCCTACCTATACATGAGTGGTAATCA 2054
||| ||||||||||||| ||| || ||||| ||| || ||||||||||| || |||||
Sbjct 396 GCTCCCACTTTGGATTGATAGAATGTCAAGCCTTGAGTATCTATACATGAGGGGAAATCA 455
Query 2055 GCTAAAAGGTCCTTTCCCTTTTCTA-CGACAGAGTCCT-TGGGTTGAGGTTATGGACATC 2112
||| || |||| |||||| | | | | ||||| | || | || ||||||| ||||||
Sbjct 456 GCTCAACGGTCATTTCCC-TCGCCAGCTACAGAAT-CTAAAGCTTAAGGTTATAGACATC 513
Query 2113 TCACACAATAGCTTCTCTGGTTCGATACCAAGGAATG-TGAATTTTCC-ATCTCTCAGAG 2170
||||| |||||||||| |||||| ||||||| |||| || | ||||| || ||| ||||
Sbjct 514 TCACATAATAGCTTCTTTGGTTCTCTACCAAGAAATGTTG-AGTTTCCAAT-TCTGAGAG 571
Query 2171 AACTAAGACTACAAAACAATGAGTTTACGGGTTTAGTTCCGGGA-AATTTATTCAAGGCT 2229
| |||||||||| ||||||||||||| || | | |||| || ||| ||| |||||
Sbjct 572 AGTTAAGACTACAGAACAATGAGTTTATTGGCTCAATTCC-AGACGCTTTGTTCGAGGCT 630
Query 2230 GCGGGATTAGAAGTGCTTGATTTGCGGAACAACAATTTTTCTGGA-AAGATACTGAACAC 2288
| | | | || ||| ||||| |||||||||||||||||||| || | | | ||||| |
Sbjct 631 GAGCTACTGGAGGTGATTGATATGCGGAACAACAATTTTTCT-GATATGGTTCTGAATAA 689
Query 2289 TATTGACC-AGACATCTAAGTTACGTATTCTTCTTCTACGGAATAACAGCTT-TCAAACT 2346
| ||| || || ||||||| ||| || ||||||||||||||| |||||| || | ||| |
Sbjct 690 TGTTG-CCAAGGCATCTAATTTAGGTGTTCTTCTTCTACGGAGTAACAG-TTATGAAAGT 747
Query 2347 TATATCCCTGGGAAAATATGTCAGCTAAGTGAAGTTGGTCTGTTAGACTTGTCTCACAAT 2406
| ||||||| |||| ||||||||||||||||||||||| | || || || ||||| |||
Sbjct 748 CACATCCCTGAGAAACTATGTCAGCTAAGTGAAGTTGGTATCTTGGATTTATCTCAGAAT 807
Query 2407 CAATTCAGAGGCCCCATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAGAGCAGAAT 2466
|||||| ||| |||||||||||||||||||||||||||||||||||| | || ||
Sbjct 808 AAATTCAAAGGTGTTATACCATCATGTTTCAGTAAAATGTCTTTTGGTGCAAAAAAGTAT 867
Query 2467 GACCGTACCATGTCACTTGTTGCAGATTTT-GACTTCTCATACA-TTACATTCTTGCCAC 2524
||| | | ||||||| ||| | ||| | | ||||||| | | || |||||| || |
Sbjct 868 GACAGCAACATGTCATTTGATCCAG-TGGAAGGCTTCTCAAA-AGTTTCATTCTCGCAA- 924
Query 2525 A-TTGTCAAT-ATGGATCA-C-ATCTTAAC-TTGGATGATGGTGTCAG-GAATGGTTATC 2578
| ||| | | || |||| | ||| ||| ||| |||||| | || | | ||||| ||
Sbjct 925 AGTTGG-AGTTATACATCAGCTATC--AACCTTG-ATGATGATTTC-GCGTATGGTGCTC 979
Query 2579 AACCAAAACCAGCAACCGTAGTGGATTTTTTAACGAAAAGCAGATATGAGGCGTATCAAG 2638
||| | |||||||| | |||||||||||||||||||||| |||||||| || |||||||
Sbjct 980 AACGTACACCAGCAATCATAGTGGATTTTTTAACGAAAAGAAGATATGAAGCATATCAAG 1039
> Ahg919978 jgi|Araly1|919978|scaffold_101259.1
Length=377
Score = 122 bits (66), Expect = 1e-26
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1048 GGCTATTTAGGGATTTGCAGACTAATGAAACTCAGGGAGCTGGATTTGAGCAGCAATGCT 1107
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 277 GGCTATTTAGGGATTTGCAGACTAATAAAACTCAGGGAGCTGGATTTGAGCAGCAATGCT 336
Query 1108 TTAACAAGTCTA 1119
|||||||| |||
Sbjct 337 TTAACAAGACTA 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129053230043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5