BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07410.1
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910431 jgi|Araly1|910431|Al_scaffold_0001_685 1101 0.0
Ahg471894 jgi|Araly1|471894|fgenesh2_kg.1__1848__AT1G16920.1 165 4e-40
> Ahg910431 jgi|Araly1|910431|Al_scaffold_0001_685
Length=645
Score = 1101 bits (596), Expect = 0.0
Identities = 628/644 (98%), Gaps = 0/644 (0%)
Strand=Plus/Plus
Query 111 ATGGCGAATAGAATAGATCATGAGTACGATTACTTGTTCAAGATCGTCCTGATCGGCGAT 170
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAATCGAATAGATCATGAGTACGATTACTTGTTCAAGATCGTCCTGATCGGCGAT 60
Query 171 TCCGGTGTTGGTAAATCCAACATTCTCTCTCGATTCACCAGAAACGAGTTCTGTCTCGAA 230
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TCCGGTGTTGGTAAATCCAACATTCTCTCTCGATTCACCAGAAATGAGTTCTGTCTCGAA 120
Query 231 TCCAAATCCACCATTGGCGTCGAATTCGCCACCCGGACTTTACAGGTTGAAGGCAAAACA 290
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCCAAATCCACCATTGGCGTCGAATTCGCCACCCGTACTTTACAGGTTGAAGGCAAAACA 180
Query 291 GTGAAGGCTCAGATTTGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAAGGCTCAGATTTGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCT 240
Query 351 TACTACAGAGGAGCTGTTGGAGCTCTTCTTGTCTACGACATAACCAAGAGACAAACTTTT 410
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 241 TACTACAGAGGAGCTGTTGGAGCTCTTCTTGTCTACGACATAACCAAAAGGCAAACTTTT 300
Query 411 GAGAATGTCTTGAGATGGTTACGTGAGCTAAGGGATCATGCTGATTCCAACATTGTTATC 470
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 GAGAATGTCCTGAGATGGTTACGTGAGCTTAGGGACCATGCTGATTCCAACATTGTTATC 360
Query 471 ATGATGGCTGGAAACAAATCAGACCTGAATCACTTGAGATCTGTTGCTGATGAAGATGGT 530
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 361 ATGATGGCTGGAAACAAATCAGATCTTAATCACTTGAGATCTGTTGCTGATGAAGATGGT 420
Query 531 CGCTCTCTCGCCGAGAAGGAAGGTTTGTCGTTTCTCGAGACATCTGCTTTAGAAGCGACT 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 CGCTCTCTCGCCGAGAAGGAAGGTTTGTCGTTTCTCGAGACATCTGCTTTAGAAGCAACT 480
Query 591 AACATCGAGAAAGCGTTTCAGACCATTTTGTCTGAGATTTATCATATCATAAGCAAGAAA 650
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 481 AACATCGAGAAAGCGTTTCAGACTATTTTATCTGAGATTTATCATATCATAAGCAAGAAA 540
Query 651 GCTTTAGCGGCACAAGAAGCTGCAGGTAATCTTCCGGGCCAAGGAACAGCGATCAATATA 710
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 541 GCTTTAGCTGCACAAGAAGCTGCAGGTAATCTTCCGGGGCAAGGAACTGCGATCAATATA 600
Query 711 TCAGATTCATCTGCAACTAACAGAAAAGGATGCTGTTCTACCTA 754
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAGATTCATCTGCAACTAACAGAAAAGGATGCTGTTCTACCTA 644
> Ahg471894 jgi|Araly1|471894|fgenesh2_kg.1__1848__AT1G16920.1
Length=770
Score = 165 bits (89), Expect = 4e-40
Identities = 212/271 (78%), Gaps = 10/271 (4%)
Strand=Plus/Plus
Query 130 ATGAGTACGATTACTTGTTC-AAGATCGTCCTGATCGGCGATTCCGGTGTTGGTAAATCC 188
|||| ||||||||| | ||| ||| | || || || |||||||| || || || ||||||
Sbjct 126 ATGACTACGATTACCTCTTCAAAG-TTGTTCTTATAGGCGATTCTGGAGTCGGCAAATCC 184
Query 189 AA-CATTCTCTCTC-GATTCACCAGAAACGAGTTCTGTCTCGAATCCAAATCCACCATTG 246
|| | | || || | ||||||||| |||||||||| ||||| || |||||||||||||
Sbjct 185 AATC-TCCTTTC-CAGATTCACCAAAAACGAGTTCAACCTCGAGTCTAAATCCACCATTG 242
Query 247 GCGTCGAATTCGCCACCCGGACTTTACAGGTTGAAGGCAAAA-CAGTGAAGGCTCAGATT 305
|||||||||||||||| || || ||| | || || || ||| || | || |||||||||
Sbjct 243 GCGTCGAATTCGCCACTCGCACATTAAAAGTCGATGGTAAAGTCA-TCAAAGCTCAGATT 301
Query 306 TGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCTTACTA-CAGAGGAGC 364
||||||||||| ||||| ||| | || || || ||||| ||||| ||||| | | |||||
Sbjct 302 TGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACCAGTGCATACTATC-GTGGAGC 360
Query 365 TGTTGGAGCTCTTCTTGTCTACGACATAACC 395
||| || || || || || || || |||||
Sbjct 361 TGTGGGCGCACTCCTAGTATATGATGTAACC 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829729410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5