BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07420.1
Length=1168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919466 jgi|Araly1|919466|scaffold_100747.1 1408 0.0
Ahg481856 jgi|Araly1|481856|fgenesh2_kg.4__916__AT2G29390.1 909 0.0
> Ahg919466 jgi|Araly1|919466|scaffold_100747.1
Length=843
Score = 1408 bits (762), Expect = 0.0
Identities = 816/843 (97%), Gaps = 0/843 (0%)
Strand=Plus/Plus
Query 82 tctgtctctcATAGATCCATCCATGGCTTCCTTCGTGGAATCTGGTTGGCAGTACCTTGT 141
||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct 1 TCTGTCTCTCATAGATCCATCTATGGCTTCCCTCGTCGAATCTGGTTGGCAGTACCTTGT 60
Query 142 GACACATTTTAGCGACTTTCAACTGGCATGTATTGGGAGTTTTCTCCTCCATGAAAGCGT 201
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 61 GACACATTTTAGCGACTTTCAACTGGCCTGCATTGGGAGTTTTCTCCTCCATGAGAGCGT 120
Query 202 GTTTTTCTTATCTGGACTCCCTTTCATTTTTCTTGAAAGGCAAGGCTTTCTCAGCAAGTA 261
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 121 GTTTTTCTTATCTGGACTCCCTTTCATTTATCTAGAAAGGCAAGGCTTTCTCAGCAAGTA 180
Query 262 CAAAATTCAGACAAAAAATAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTT 321
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAAATTCAGACAAAAAACAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTT 240
Query 322 GCTTTATCATTTCTCCGTAAACTTGCCCCTGATGTTGGCCTCCTACCCTGTCTTCCGAGC 381
|||||||||||||| ||||||||||||| ||||| ||| |||||| ||||||||| ||||
Sbjct 241 GCTTTATCATTTCTGCGTAAACTTGCCCTTGATGATGGTCTCCTATCCTGTCTTCAGAGC 300
Query 382 CATGGGAATGCGAAGCAGTTTTCCTCTGCCGTCCTGGAAAGAAGTGTCTGCCCAGATATT 441
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 CATGGGAATGCGAAGCAGTTTTCCTCTACCGTCCTGGAAAGAAGTGTCTGCCCAGATATT 360
Query 442 ATTCTACTTTATCATTGAGGATTTTGTCTTCTATTGGGGTCATCGGATCTTGCATTCAAA 501
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTCTACTTCATCATTGAGGATTTTGTCTTCTATTGGGGTCATCGGATCTTGCATTCAAA 420
Query 502 ATGGCTGTACAAGAACGTGCATAGTGTGCATCATGAATATGCCACACCATTTGGTTTGAC 561
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGGCTGTACAAGAACGTGCACAGTGTGCATCATGAATATGCCACACCATTTGGTTTGAC 480
Query 562 ATCAGAATATGCTCACCCCGCTGAGATTCTATTTCTGGGTTTTGCTACCATAGTCGGTCC 621
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 ATCAGAATACGCTCACCCCGCTGAGATTCTATTCCTGGGTTTTGCTACCATAGTCGGTCC 540
Query 622 AGCTCTTACTGGCCCTCACCTAATTACTCTCTGGTTATGGATGGTGTTGAGAGTGCTGGA 681
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 541 AGCTCTTACTGGCCCTCACCTGATTACTCTCTGGTTATGGATGGTGCTGAGAGTGCTTGA 600
Query 682 GACAGTTGAGGCACATTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACAGTTGAGGCACATTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCT 660
Query 742 GTATGGAGGTGCTGACTTCCATGACTACCATCACCGACTGCTATACACAAAGTCCGGAAA 801
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GTATGGAGGTGCTGACTTCCATGACTACCATCACCGACTGCTATACACAAAGTCTGGAAA 720
Query 802 CTACTCTTCAACTTTTGTGTATATGGACTGGATCTTTGGTACTGACAAGGGGTACAGAAG 861
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 CTACTCTTCAACTTTTGTGTATATGGACTGGATCTTTGGTACTGACAAGGGCTACAGAAG 780
Query 862 ACTGAAGACCCTTAAAGAAAACGGTGACATGAAACAAACGTGAAATTGCCACTTTGGATT 921
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 781 ACTGAAGACCCTTAAAGAAAACGGTGACATGAAACAAACGTGAAATTACCAGTTTGGATT 840
Query 922 GCA 924
|||
Sbjct 841 GCA 843
> Ahg481856 jgi|Araly1|481856|fgenesh2_kg.4__916__AT2G29390.1
Length=934
Score = 909 bits (492), Expect = 0.0
Identities = 689/785 (88%), Gaps = 10/785 (1%)
Strand=Plus/Plus
Query 102 CCATGGCTTCCT-TCGTGGAATCTGGTTGGCAGTACCTTGTGACACATTTTAGCGACTTT 160
|||||| || || |||| ||||| |||||| |||||||||| |||||||| |||||||||
Sbjct 5 CCATGGATT-CTCTCGTTGAATCCGGTTGGAAGTACCTTGTTACACATTTCAGCGACTTT 63
Query 161 CAACTGGCATGTATTGGGAGTTTTCTCCTCCATGAAAGCGTGTTTTTCTTATCTGGACTC 220
|||||||| || |||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 64 CAACTGGCGTGCATTGGGAGTTTTATCCTTCATGAAAGCGTGTTTTTCTTGTCTGGACTC 123
Query 221 CCTTTCATTTTTCTTGAAAGGCA-AGGCTTTCTCAGCAAG-TACAAAATTCAGACAAAAA 278
|||| |||||| || |||||| | || ||||||||| || |||||||||||||||||||
Sbjct 124 CCTTACATTTTCCTAGAAAGG-ACCGGTTTTCTCAGC-AGTTACAAAATTCAGACAAAAA 181
Query 279 ATAACACACCTGCAGCCCAAGGAAAATGTATTACTCGCCTGTTGCTTTATCATTTCTCCG 338
|||| || |||| ||||||||||||||| ||| |||| || |||||||| ||||||| ||
Sbjct 182 ATAATACTCCTGAAGCCCAAGGAAAATGCATTGCTCGACTATTGCTTTACCATTTCTGCG 241
Query 339 TAAACTTGCCCCTGATGTTGGCCTCCTACCCTGTCTTCCGAGCCATGGGAATGCGA-AGC 397
||||||||||||| ||| |||| || || ||||||||| || |||||| |||| | |||
Sbjct 242 TAAACTTGCCCCTCATGATGGCGTCTTATCCTGTCTTCAGATTCATGGGCATGC-AGAGC 300
Query 398 AGTTTTCCTCTGCCGTCCTGGAAAGAAGTGTCTGCCCAGATATTATTCTACTTTATCATT 457
||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 301 AGTTTTCCTTTGCCGTCCTGGAAAGTGGTGTCTGCCCAGATCTTATTCTACTTCATCATT 360
Query 458 GAGGATTTTGTCTTCTATTGGGGTCATC-GGATCTTGCATTCAAAATGGCTGTACAAGAA 516
||||||||||| |||||||||||||| | ||||||||||| | |||||||||||||||||
Sbjct 361 GAGGATTTTGTATTCTATTGGGGTCA-CAGGATCTTGCATACTAAATGGCTGTACAAGAA 419
Query 517 CGTGCATAGTGTGCATCATGAATATGCCACACCATTTGGTTTGACATCAGAATATGCTCA 576
||| || |||||||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 420 CGTTCACAGTGTGCATCATGAGTACGCAACACCGTTTGGTTTGACATCAGAATATGCTCA 479
Query 577 CCCCGCTGAGATTCTATTTCTGGGTTTTGCTACCATAGTCGGTCCAGCTCTTACTGGCCC 636
||||||||||||||| || ||||||||||||||||| || ||||| ||||| || || ||
Sbjct 480 CCCCGCTGAGATTCTGTTCCTGGGTTTTGCTACCATTGTTGGTCCGGCTCTCACAGGGCC 539
Query 637 TCACCTAATTACTCTCTGGTTATGGATGGTGTTGAGAGTGCTGGAGACAGTTGAGGCACA 696
|||||| || || ||||||||||||||| || | ||||| | |||||||||||||||||
Sbjct 540 TCACCTGATCACCCTCTGGTTATGGATGATGCTCAGAGTTATTGAGACAGTTGAGGCACA 599
Query 697 TTGTGGTTATCATTTCCCATGGAGCCTCTCAAATTTTCTTCCTCTGTATGGAGGTGCTGA 756
|||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||
Sbjct 600 TTGTGGTTATCATTTCCCATGGAGCCCCTCGAATTTTCTTCCTCTGTACGGCGGTGCTGA 659
Query 757 CTTCCATGACTACCATCACCGACTGCTATACACAAAGTCCGGAAACTACTCTTCAACTTT 816
|||||||||||| ||||| ||| | || ||||||||||| || |||||||| ||||||||
Sbjct 660 CTTCCATGACTATCATCATCGATTACTCTACACAAAGTCTGGGAACTACTCATCAACTTT 719
Query 817 TGTGTATATGGACTGGATCTTTGGTACTGACAAGGGGTACAGAAGACTGAAGACCCTTAA 876
||| || |||||||||||||||||||| ||||| || ||||||| ||||||| | || ||
Sbjct 720 TGTCTACATGGACTGGATCTTTGGTACCGACAAAGGTTACAGAAAACTGAAGGCACTAAA 779
Query 877 AGAAA 881
|||||
Sbjct 780 AGAAA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43574494131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5