BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07430.1
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470764 jgi|Araly1|470764|fgenesh2_kg.1__718__AT1G07430.1 2026 0.0
Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351 148 1e-34
> Ahg470764 jgi|Araly1|470764|fgenesh2_kg.1__718__AT1G07430.1
Length=1706
Score = 2026 bits (1097), Expect = 0.0
Identities = 1499/1681 (89%), Gaps = 76/1681 (5%)
Strand=Plus/Plus
Query 1 GATATTTATTCAACTGCGTGGTATAACCaaaaaaaaaaGAAACACTATTCGACTCttttt 60
||||||||||||| ||| |||||||||| || |||||||||||||||| || |
Sbjct 1 GATATTTATTCAATTGCATGGTATAACC--------AA-AAACACTATTCGACTC-TTCT 50
Query 61 ttgtttttGTAATAAACATAAAATAAATTTTGGAGAGAGATATTTCGTCGGAAATTAATT 120
|| ||||||||||||| |||||||||| | ||||| ||||||||| ||||||||||||
Sbjct 51 TT-TTTTTGTAATAAAAATAAAATAAAAATCGGAGACAGATATTTCACCGGAAATTAATT 109
Query 121 GACGTTCAAAAGATTCGTTACCGGAATATTTAGTAGAGGCGGCGATCGAGTTATGGCGGA 180
|||| |||| |||||||||||||||| || |||| || | ||||||||||||||||||
Sbjct 110 GACGATCAACAGATTCGTTACCGGAAAATCTAGT---GGAGACGATCGAGTTATGGCGGA 166
Query 181 TATTTGTTATGAAGACGAGACGTCGGCTTGTGAATCAAGACCGTTGTGGTCTAGCCGGAA 240
||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct 167 TATTTGTTACGAAGACGAGACGTCTGCTTGTGAATCGAGACCGTCGTGGTCTAGCCGGAA 226
Query 241 GTGGAGGATCGGTGTCCAGCGATTCAGGATGTCTCCGTCGGAGATGAATCCCACGGCGTC 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 227 GTGGAGGATCGGTGTTCAGCGATTCAGGATGTCTCCGTCGGAGATGAATCCCACGGCTTC 286
Query 301 GACGAC---GGAGGAGGAGGAT---AAATCTGAAGGGATTTATAATAAGCGAAATAAACA 354
|||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 287 GACGGCGGAGGAGGAGGAGGATAAGAAATCTGAGGGGATTTATAATAAGCGAAATAAACA 346
Query 355 AGAAGAGTACGATTTTATGAACTGTGCATCGTCGTCACCTTCTCAAAGCTCTCCTGAAGA 414
|||||||||||||||||||||||||||||| || ||||| | | | | || ||
Sbjct 347 AGAAGAGTACGATTTTATGAACTGTGCATCATCATCACC-AC-C--A-C-CTTCT----- 395
Query 415 AGAGAGTGTATCACTTGAAGACAGTGACGTCTCTATCTCCGATGGAAATTCATCGGTTAA 474
|||| | || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 396 -CAGAG-CTCTC-C-TGAAGAGAGTGACGTCTCCGTCTCCGATGGAAATTCATCGGTTAA 451
Query 475 TGATGTTGCAGTTATTCCGT-CGAAGAAGACGGTTAAAGAGACGGATCTGAGGCCGAGAT 533
|||| || || ||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 452 TGATATTACACTTATTCC-TGCTAAGAAGACGGTTAAAGAGACGGATCTGAGGCCGAGAT 510
Query 534 ACGGCGTCGCATCGGTGTGCGGGAGAAGAAGAGATATGGAAGATGCGGTTGCG-TTACAT 592
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 511 ACGGCTTCGCATCGGTGTGCGGGAGAAGAAGAGATATGGAAGATGCGGTGGCGATT-CAT 569
Query 593 CCGTCTTTTGTACGGAAACAAACGGAGTTTTCTCGAACAAGATGGCACTATTTTGGTGTT 652
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 570 CCGTATTTTGTACGGAGACAAACGGAGTTTTCTCGAACAAGATGGCATTATTTTGGTGTT 629
Query 653 TACGACGGCCATGGCTGTTCTCACGTTGCGGCT-AGGTGTAAAGAGAGACTTCACGAGTT 711
||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 630 TACGACGGCCACGGCTGTTCTCACGTTGC-GTTGAGGTGTAAAGAGAGACTTCACGAGTT 688
Query 712 AGTGCAAGAAGAAGCGT-TGTCGGATAAGAAAGAAGAATGGAAGAAGATGATGGAGCGTA 770
||||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||
Sbjct 689 AGTGCAAGAAGAAGC-TCTCTCGGATAAGAAAGAAGAATGGAAGAAGACGATGGAGCGTA 747
Query 771 GCTTCACACG-TATGGACAAAGAGGTTGTTCGTTGGGGTGAAACTGTGATGAGTGCTAAT 829
||||||| || | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 748 GCTTCACGCGCT-TGGACAAGGAGGTTGTTCGTTGGGGTGAAACTGTGATGAGTGCTAAT 806
Query 830 TGTAGGTGTGAGCTTCAAACGCCGGACTGTGACGCTGTTGGATCCACCGCCGTTGTCTCC 889
|| || |||||||||||||| || ||||||||||| |||||||||||||| || || |||
Sbjct 807 TGCAGATGTGAGCTTCAAACTCCTGACTGTGACGCCGTTGGATCCACCGCAGTGGTTTCC 866
Query 890 GTCATTACGCCGGAGAAGATCATTGTTGCGAATTGCGGTGACTCAAGAGCAGTTCTTTGT 949
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 867 GTCATTACGCCGGAGAAGATTATTGTTGCGAATTGTGGTGACTCAAGAGCAGTTCTTTGT 926
Query 950 AGGAATGGTAAAGCAGTACCTCTTTCTACAGATCATAAGCCTGATCGTCCGGATGAGCTG 1009
|| |||||||||||||| |||||||| | |||||| ||||| ||||||||||||||||||
Sbjct 927 AGAAATGGTAAAGCAGTGCCTCTTTCCATAGATCACAAGCCGGATCGTCCGGATGAGCTG 986
Query 1010 GATCGAATCCAAGAAGCAGGAGGACGAGTGATATACTGGGACGGTGCAAGAGTCTTAGGC 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GATCGAATCCAAGAAGCAGGAGGACGAGTGATATACTGGGACGGTGCAAGAGTCTTAGGC 1046
Query 1070 GTTTTAGCCATGTCACGAGCCATAGGAGACAATTATTTAAAACCGTACGTCACTTCGGAG 1129
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1047 GTTTTAGCCATGTCACGAGCCATAGGAGACAACTATTTAAAACCGTACGTGACTTCCGAA 1106
Query 1130 CCGGAAGTGACGGTTACGGATCGGACTGAGGAAGATGAGTTTCTGATTCTAGCGA-CGGA 1188
||||||||||| || |||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1107 CCGGAAGTGACCGTGACGGATCGGACTGAGGAAGATGAGTTTCTGATTCTAGCAAGCG-A 1165
Query 1189 CGGGCTATGGGACGTAGTGACGAACGAGGCAGCGTGTACGATGGTGCGCATGTGTCT-CA 1247
|||| |||||||||| ||||| |||||||| |||||| ||||||| | |||||| || ||
Sbjct 1166 CGGGTTATGGGACGTTGTGACAAACGAGGCGGCGTGTTCGATGGTTCACATGTG-CTTCA 1224
Query 1248 ACAGAAAAAGTGGTCGTGGAAGACGGCgaggagaaacacagactccggggaggaggagtg 1307
||||||||||||| | |||||||||||||||||||| || || | | | | | |
Sbjct 1225 ACAGAAAAAGTGGACACGGAAGACGGCGAGGAGAAACTCAAACACAG---ACTCCG-G-G 1279
Query 1308 aagaagaagggaaagaagaagaggagaaggtggtggggtcaagaaagaacgggaagagag 1367
|| || || ||| ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1280 AACCAGGAGTGAA-GAAGAGGAGGAGAAGGTGGTGGGGTCAAGAAAGAACGGGAAGAAAG 1338
Query 1368 gagagaTCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGG 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GAGAGATCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGG 1398
Query 1428 CAAAACACAGTAGTGACAACGTAAGCGTCGTCGTTATTGATCTCAGAAGAAGAAGAAAGA 1487
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1399 CAAAACACAGTAGTGACAACGTAAGCGTCGTCGTTATTAATCTCAGAAGAAGAAGAAAGA 1458
Query 1488 GACACGTTGCTTGACACTAATCTCCTCATCACTCTTACTCCACCGTTTTTTGTGTTGTTT 1547
|||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||
Sbjct 1459 GACACGTTGCTTGACACTAATCTCATCATCACTCTTACTCCAAC-TTTTTTGT-TTGTTT 1516
Query 1548 AAAATGATTCTTTTACCTTGGGACGAAGGTAGCTCAAATCTTTGAACCCaaaagagagaa 1607
|||||||||||||| |||| | | | | ||||||||||||||||||||||
Sbjct 1517 AAAATGATTCTTTTTCCTT----C-A------C--A--TCTTTGAACCCAAAAGAGAGAA 1561
Query 1608 aaaaaaa-gcattaggtctaaaaaaaaaaC-CCCGGTTTACTGAAAGCGGTTAAACCGGG 1665
||||||| | | | | ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1562 AAAAAAATGGGTGAA-T-TAAAAAAAAAATACCCGGTTTATTGAAAGCGGTTAAACCGGG 1619
Query 1666 T 1666
|
Sbjct 1620 T 1620
> Ahg900701 jgi|Araly1|900701|Al_scaffold_0004_1351
Length=1146
Score = 148 bits (80), Expect = 1e-34
Identities = 101/111 (91%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 1372 gaTCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAA 1431
|||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 GATCTCGGACAAGGCATGTACGGAAGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAG 1076
Query 1432 ACACAGTAGTGACAACGTAAGCGTCGTCGTTATTGATCTCAGAAGAAGAAG 1482
||||||||||||||||| || ||||| || |||||||||||||||| |||
Sbjct 1077 GCACAGTAGTGACAACGTCAGTGTCGTAGTGATTGATCTCAGAAGAA-AAG 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68219628795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5