BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07440.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470766 jgi|Araly1|470766|fgenesh2_kg.1__720__AT1G07440.1 1371 0.0
> Ahg470766 jgi|Araly1|470766|fgenesh2_kg.1__720__AT1G07440.1
Length=926
Score = 1371 bits (742), Expect = 0.0
Identities = 839/886 (95%), Gaps = 5/886 (1%)
Strand=Plus/Plus
Query 59 GAGAGAAATGGCTGGAGCAGAGCAAAGCCAGAGATGGAGCCTTAAGGCCAAGACCGTACT 118
||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 44 GAGAGCAATGGCTGGAGCAGAGCAAAGCCAAAGATGGAGCCTTAAGGACAAGACCGCACT 103
Query 119 TGTAACCGGTGGAACAAAAGGCATCGGGCATGCTATAGTAGAGGAATTTGCAGGATTTGG 178
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 TGTAACCGGTGGAACCAAAGGCATCGGGCATGCTATAGTAGAGGAATTTGCAGGATTTGG 163
Query 179 AGCAGTAATACATACTTGTGCTAGAAACGAATATGAGCTTAACGAGTGTTTAAGCAAATG 238
|||||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||
Sbjct 164 TGCAGTAATACATACTTGTGCCAGAGACGAATCTCAGCTTAACGAGTGTTTAAGCAAATG 223
Query 239 GCAAAAGAAGGGTTTTCAAGTCACTGGTTCGGTCTGTGACGCATCTT-TGAGACCAGAGA 297
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 224 GCAAAAGAAGGGTTTTCAAGTCACTGGTTCGGTCTGTGACGCATCTTCT-AGACCAGACA 282
Query 298 GAGAAAAGCTAATGCAGACTGTGTCTTCAATGTTTGGTGGAAAGCTCGATATCCTCATAA 357
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 283 GAGAGAAGCTAATGCAGACTGTGTCTTCAATGTTTGGTGGCAAGCTCGATATCCTCATAA 342
Query 358 ACAATTTGGGAGCGATTCGGTCAAAACCAACGCTGGATTACACAGCAGAAGATTTCTCGT 417
||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 343 ACAATGTGGGAGCGATTCGGTCAAAGCCAACGCTGGATTATACAGCAGAGGATTTCTCGT 402
Query 418 TTCATATTTCGACAAACTTAGAATCTGCTTATC-ATCTGAGCCAGCTTGCGCATCCTCTG 476
|||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 403 TTCATATTTCGACAAACTTAGAATCTGCTT-TCCATCTGAGCCAGCTTGCACATCCTCTG 461
Query 477 CTTAAGGCTTCAGGATGTGGGAACATAATTTTCATGTCCTCTATTGCTGGAGTTGTATCT 536
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 462 CTTAAGGCTTCAGGATGTGGGAACATCGTTTTCATGTCCTCTATTGCTGGAGTTGTATCG 521
Query 537 GCTAGTGTCGGCTCCATCTACTCTGCAACGAAAGGGGCATTGAATCAGCTAGCAAGGAAC 596
||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 522 GCTAGTGTCGGCTCCGTCTACTCAGCAACAAAAGGGGCAATGAATCAGCTAGCAAGGAAT 581
Query 597 TTGGCATGTGAGTGGGCTAGTGATGGCATTAGGGCTAATGCTGTGGCTCCTGCAGTCATC 656
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 582 TTGGCATGTGAGTGGGCTAGCGATGGCATTAGGGCTAATGCTGTTGCTCCTGCAGTCATT 641
Query 657 GCAACTCCTTTGGCTGAAGCTGTGTATGATGATGAGTTCAAGAAAGTGGTGATATCAAGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GCAACTCCTTTGGCTGAAGCTGTGTATGATGATGAGTTCAAGAAAGTGGTGATATCAAGA 701
Query 717 AAGCCGTTGGGGCGTTTCGGGGAGCCTGAAGAAGTGTCCTCGCTTGTGGCTTTTCTATGT 776
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 702 AAGCCGCTGGGGCGTTTCGGGGAGCCTGAAGAAGTGGCCTCGCTTGTGGCTTTTCTATGT 761
Query 777 ATGCCTGCAGCTTCTTATATAACTGGTCAAACCATTTGTGTCGATGGAGGTCTCACTGTC 836
||||||||||| |||||| |||||||||| |||||||| ||||||||||||||| |||||
Sbjct 762 ATGCCTGCAGCGTCTTATGTAACTGGTCAGACCATTTGCGTCGATGGAGGTCTCTCTGTC 821
Query 837 AATGGCTTCTCCTATCAGCCACAAGGTTAAAATCCAATATCCAAAAACAAACACATTTTC 896
||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||
Sbjct 822 AATGGCTTCTCCTATCAGCCACAAGATTAAAA-CCAATATCCAAAAACAAACAAAGTTTC 880
Query 897 AACTTCATTACTTTGAACATTGTCATCTTGGGCTAAGCCCGGTTTG 942
| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 881 ATCTTCATTACTTAGAACATTGTCATCTTGGGCTAAGTCCGGTTTG 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5