BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07460.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470768 jgi|Araly1|470768|fgenesh2_kg.1__722__AT1G07460.1 1009 0.0
> Ahg470768 jgi|Araly1|470768|fgenesh2_kg.1__722__AT1G07460.1
Length=747
Score = 1009 bits (546), Expect = 0.0
Identities = 654/707 (93%), Gaps = 4/707 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCAAGCCTTCTATGGCTTCCCCATAGCCTTCAAAAACAGTACTAACTCATCAAAC 60
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 1 ATGGGTCAAGCCTTCTATGGCTTCCCCATACCCTTCAACAACAGTACTAACTCATCGAAC 60
Query 61 TCGTTTTCTTTCTCCACAAGTTTCGTTTTCTCAATCGACGCACCAGGTCATGGCCTAACC 120
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 ACGCTTTCTTTCTCCACAAGTTTCGTTTTCTCAATCAACGCACCAGGTCATGGCCTAACC 120
Query 121 TTCCTCATCTCGCCGTCCATGGATTTCACGCAAGCCATGCCGAGCCAGTATCTCGGTCTC 180
|| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 121 TTTCTCATCTCGCCGTCTATGGATTTCACTCAAGCCATGCCGAGCCAGTTTCTCGGTCTC 180
Query 181 TTCAACACTACAAACAATGGAAACTCCACTAACCGAATTCTCGCGGTAGAATTTGACACA 240
||||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 181 TTCAACACTACAAACAACGGAAACTCCACAAACCGAATTCTCGCAGTCGAATTCGACACA 240
Query 241 GTAAAGTCCAACGAGTTTCTTGACATCGACGATAACCATGTAGGCATCGATGTGAACGGT 300
|||||||||| ||||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct 241 GTAAAGTCCACCGAGTTTCTTGACATCGACGATAACCACGTAGGCATTGACGTGAATGGT 300
Query 301 TTGGTCTCCGTTGAATCTGCACCAGCTGCAtttttttCCAACAAGCAAAGCAAGAATATA 360
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGTATCCGTTGAATCTGCACCTGCTGCATTTTTTTCCAACAAGCAAAGCAAGAATATA 360
Query 361 AGCT-TGAAGTTATCGAGCAAAGACCCAATTCGGGCTTGGATCGAATACAATGGAGTAGA 419
|| | ||||| | || |||||||| || || |||||||||||||||||||||||||||||
Sbjct 361 AG-TCTGAAGCTGTCAAGCAAAGATCCGATCCGGGCTTGGATCGAATACAATGGAGTAGA 419
Query 420 AAGGCTTCTCAATGTCACATTGGCTACC-CTTGACACTTCTAAGCCTAACTTTCCTCTTT 478
||||||||||||||||||||||||| || |||||||| ||||| ||||| ||||||||||
Sbjct 420 AAGGCTTCTCAATGTCACATTGGCT-CCTCTTGACACGTCTAAACCTAAATTTCCTCTTT 478
Query 479 TGTCAAGACAGATGAATCTTTCTGAGATTTTCATGGAGAAAATGTATGTAGGATTCTCGG 538
|||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 479 TGTCAAGAAAGATGAATCTTTCAGAGATTTTTATGGAGAAAATGTATGTCGGATTCTCAG 538
Query 539 CATCCACAGGAAACATTACGAGTAATCATGATGTTCTTGGATGGAGCTTTAGCAGAGAAG 598
|||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 539 CATCCACAGGAAACATTACGAGTAGTCATTATGTTATTGGATGGAGCTTTAGCAGAGAAG 598
Query 599 GAAAACCACAAGACTTTGATCTTAAACTACTTCCTTCGCTTTCAACCCCGTCGCCATCTG 658
| ||| |||||||||||||||| | |||||||||||| |||||||||| ||||||||||
Sbjct 599 GGAAAGCACAAGACTTTGATCTCAGTCTACTTCCTTCGATTTCAACCCCATCGCCATCTG 658
Query 659 ACTTTGATGACCTTGATCCCATTCCAGATCCTCCTTCAGATTCAGCA 705
| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 659 ATTTTGATGACCTTGATCCAATTCCAGATCCTCCTTCGGATTCAGCA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5