BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07473.1

Length=924
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg311805 jgi|Araly1|311805|fgenesh1_pm.C_scaffold_1000585           521    3e-147


> Ahg311805 jgi|Araly1|311805|fgenesh1_pm.C_scaffold_1000585
Length=378

 Score =  521 bits (282),  Expect = 3e-147
 Identities = 346/378 (92%), Gaps = 0/378 (0%)
 Strand=Plus/Plus

Query  385  ATGGAGAACAGTGTGAACATGTTTGGGAAAAGTGAGTCCCCGAGATCACCCACTAGACTG  444
            |||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||| |||
Sbjct  1    ATGGAGAACAGTGTAAACATGTCTGGGAAAAGTGAGTCCCCAAGATCACCAACTAGGCTG  60

Query  445  CAGAAGCAAGCACCCACGGCTCTGCATCTAGGCCTTGTTCCCGAGAACCCCTTCTTACAG  504
            |||| ||||||||||||||||||||| || | |||||||||||| ||||||||||| |||
Sbjct  61   CAGAGGCAAGCACCCACGGCTCTGCAACTTGACCTTGTTCCCGATAACCCCTTCTTGCAG  120

Query  505  CAGTCTTCTGATGTGGTTGGAACGACAGCTATTCCTCTGCTTTCACCTCTTTTTGTGTCT  564
            ||||||| ||||||||||  |||||||| ||||||||||||||||||||| ||||| |||
Sbjct  121  CAGTCTTGTGATGTGGTTACAACGACAGTTATTCCTCTGCTTTCACCTCTCTTTGTCTCT  180

Query  565  CCAAGTCCGCACTCTTCTCTCTCTAAAGAAGGGGACGATTCCATGTTACCGGTGGGATTA  624
            |||| || |||||||||||||||||||||||||||| ||| | |||| ||||||||||| 
Sbjct  181  CCAAATCTGCACTCTTCTCTCTCTAAAGAAGGGGACAATTGCGTGTTTCCGGTGGGATTT  240

Query  625  ACTGAAAAGAACGGATCTCAGCCGTCAATGGACCAGAAGGAAGGGCCGCAATATTCAGCC  684
            ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  241  ACTGAAAAGAATGGATCTCAGCCGTCAATGGACCACAAGGAAGGGCCGCAATATTCGGCT  300

Query  685  AAGGCCGACCATAGCAACCAGATGGCTCTCATGAATATGTTTCAGACCAAGTTCGTGCTT  744
            ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct  301  AAGGCCGACAATAGCAACGAGATGGCTCTCTTGAATATGTTTCAGACCAAGTTCGTGCTT  360

Query  745  GTAGACCATTCACAGTAA  762
            ||||| ||||||||||||
Sbjct  361  GTAGATCATTCACAGTAA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34272502383


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5