BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07473.1 Length=924 Score E Sequences producing significant alignments: (Bits) Value Ahg311805 jgi|Araly1|311805|fgenesh1_pm.C_scaffold_1000585 521 3e-147 > Ahg311805 jgi|Araly1|311805|fgenesh1_pm.C_scaffold_1000585 Length=378 Score = 521 bits (282), Expect = 3e-147 Identities = 346/378 (92%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 385 ATGGAGAACAGTGTGAACATGTTTGGGAAAAGTGAGTCCCCGAGATCACCCACTAGACTG 444 |||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||| ||| Sbjct 1 ATGGAGAACAGTGTAAACATGTCTGGGAAAAGTGAGTCCCCAAGATCACCAACTAGGCTG 60 Query 445 CAGAAGCAAGCACCCACGGCTCTGCATCTAGGCCTTGTTCCCGAGAACCCCTTCTTACAG 504 |||| ||||||||||||||||||||| || | |||||||||||| ||||||||||| ||| Sbjct 61 CAGAGGCAAGCACCCACGGCTCTGCAACTTGACCTTGTTCCCGATAACCCCTTCTTGCAG 120 Query 505 CAGTCTTCTGATGTGGTTGGAACGACAGCTATTCCTCTGCTTTCACCTCTTTTTGTGTCT 564 ||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| ||| Sbjct 121 CAGTCTTGTGATGTGGTTACAACGACAGTTATTCCTCTGCTTTCACCTCTCTTTGTCTCT 180 Query 565 CCAAGTCCGCACTCTTCTCTCTCTAAAGAAGGGGACGATTCCATGTTACCGGTGGGATTA 624 |||| || |||||||||||||||||||||||||||| ||| | |||| ||||||||||| Sbjct 181 CCAAATCTGCACTCTTCTCTCTCTAAAGAAGGGGACAATTGCGTGTTTCCGGTGGGATTT 240 Query 625 ACTGAAAAGAACGGATCTCAGCCGTCAATGGACCAGAAGGAAGGGCCGCAATATTCAGCC 684 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 241 ACTGAAAAGAATGGATCTCAGCCGTCAATGGACCACAAGGAAGGGCCGCAATATTCGGCT 300 Query 685 AAGGCCGACCATAGCAACCAGATGGCTCTCATGAATATGTTTCAGACCAAGTTCGTGCTT 744 ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 AAGGCCGACAATAGCAACGAGATGGCTCTCTTGAATATGTTTCAGACCAAGTTCGTGCTT 360 Query 745 GTAGACCATTCACAGTAA 762 ||||| |||||||||||| Sbjct 361 GTAGATCATTCACAGTAA 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34272502383 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5