BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07476.1

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919473 jgi|Araly1|919473|scaffold_100754.1                        568    3e-161


> Ahg919473 jgi|Araly1|919473|scaffold_100754.1
Length=461

 Score =  568 bits (307),  Expect = 3e-161
 Identities = 409/457 (89%), Gaps = 11/457 (2%)
 Strand=Plus/Plus

Query  166  TTGAGTCTGAATCTC-GTGATGGAGAAGAGTGTCATCATGTTTGGGAAAAGCGAGTCCCC  224
            ||||||||||||||| |||||||| |||||||| | || |||||||||||||||||||||
Sbjct  3    TTGAGTCTGAATCTCGGTGATGGAAAAGAGTGTTAACACGTTTGGGAAAAGCGAGTCCCC  62

Query  225  GAGATTACCGACTAGGCTGCAGAGGCAAGCTCCCGCGGCTCTGAATCTTGGTCGTGTTCC  284
             |||| |||||||||||||||||||||||||||| | |||||||||||||  |||||| |
Sbjct  63   AAGATCACCGACTAGGCTGCAGAGGCAAGCTCCCTCAGCTCTGAATCTTGACCGTGTTTC  122

Query  285  CGAGAATCCCTTTCTGCAGCAGTCTGGTGATG-AGGTTGCAGGTGCACCTATTCCTCTGC  343
            ||||||||||||| ||||||||||| |||||| | |||||||||||| ||||||||||||
Sbjct  123  CGAGAATCCCTTTGTGCAGCAGTCTTGTGATGCA-GTTGCAGGTGCAGCTATTCCTCTGC  181

Query  344  TTTCACCTCTCTTTGTGTCTCCAAATTCGCACTCTTCTCTTC-CTAGAGAAGGGCA-AGT  401
            |||||||||||||||| ||||||||||||||||||||||  | ||| ||||||||| |  
Sbjct  182  TTTCACCTCTCTTTGTCTCTCCAAATTCGCACTCTTCTC-ACTCTAAAGAAGGGCACA-C  239

Query  402  AAATCCAAACT-CGCAAGCTTCTCCCACTAGAGAAGGGCACGATTTTACGTTTCCGGTGA  460
            ||||||||| | | || ||||||||| ||||||||||||||||||||||||||| || | 
Sbjct  240  AAATCCAAA-TCCACACGCTTCTCCCTCTAGAGAAGGGCACGATTTTACGTTTCGGGCGG  298

Query  461  GTCTTACTGAAAAGAAAGGATCTCAGCCTTCGATGGACCACAA-AATAGAGTGGCAACAT  519
            ||  || ||| ||||| |||||||||||||| |||||||||||  | || |||||| |||
Sbjct  299  GTAATAGTGAGAAGAACGGATCTCAGCCTTCAATGGACCACAAGGA-AGGGTGGCAGCAT  357

Query  520  TCGGCTAAGGGCGACCACAGTGACCAGATGAGTCTCTTAAATATGTTTCAGACCAAGTTC  579
            |||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  358  TCGGCTAAGGTCGACCATAGTGACCAGATGAGTCTCTTGAATATGTTTCAGACCAAGTTC  417

Query  580  CTGCTTGTAGATCATCCACAGTGAGGGTTTTAGCATT  616
            ||||||||||||||| |||||||||||||||||||||
Sbjct  418  CTGCTTGTAGATCATTCACAGTGAGGGTTTTAGCATT  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27524746074


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5