BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07485.1 Length=662 Score E Sequences producing significant alignments: (Bits) Value Ahg470775 jgi|Araly1|470775|fgenesh2_kg.1__729__AT1G07485.1 758 0.0 Ahg481830 jgi|Araly1|481830|fgenesh2_kg.4__890__AT2G29125.1 76.8 2e-13 > Ahg470775 jgi|Araly1|470775|fgenesh2_kg.1__729__AT1G07485.1 Length=567 Score = 758 bits (410), Expect = 0.0 Identities = 528/580 (91%), Gaps = 27/580 (5%) Strand=Plus/Plus Query 1 GTCTTATCAAAATTAATAGT-AATATATTATCAAAAAAGAATCTCTTCTTACAATGTACT 59 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1 GTCTTATCAAAATTAATAGTAAATATATTATC--AAAAGAATCTCTTCTTACAATGTACT 58 Query 60 AGTATGGAAACTTGTGGC-AACTTAGAGTAGAGAATCAAACTGATCTAATCATTCaaaaa 118 ||||||||||||||| || ||||||||||||||||||||||||||||||||||| | Sbjct 59 AGTATGGAAACTTGTAGCAAACTTAGAGTAGAGAATCAAACTGATCTAATCATT----TA 114 Query 119 aaGAGAATAAAAATGCATGAGATCTATATCTACCTAGGAATCATGTTTATGCCAACATAC 178 || | || |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 115 AA-A-AA-AAAAATGCATGAGATC--TATCTACCTAGGAATCATGTTTATGCCAACATAC 169 Query 179 AAGCATAGCCACACACCTTCTCATGATATTGAAGACGACGAAGATGAAGGCACTGAGCAT 238 ||||||||||||||||||||||||||| | |||| || ||||| ||||||||||||||| Sbjct 170 AAGCATAGCCACACACCTTCTCATGATGTAAAAGAGGAAGAAGAAGAAGGCACTGAGCAT 229 Query 239 TTGGTGGATGAGCTCCGTACGAATGCAGGAGCTTTTGAGGAGGAAGCGCTTGTGGAGAAG 298 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||| Sbjct 230 TTGGTGGATGAGCTTCGTAAGAATGCAGGAGCTTTTGAGGAGGAAGCACTTGTTGAGAAG 289 Query 299 CTTCTAGAGAACTTGGATTTAGATGAAGTTGAAGAAGATGAACACGACGCAGCTAATGCA 358 ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 290 CTTCTAGAGAATTTGGATTTAGATGAAGTTGAAGAAGAGGAACATGACGCAGCTAATGCA 349 Query 359 TCCTTTTTCGACAGCCTCCACTTCTCGTCCATCTTT-GTGTTGCAGAAGAGAGAGG--GA 415 ||||| ||||||||| |||| ||||||||||| ||| |||||||||||||||||| || Sbjct 350 TCCTTCTTCGACAGCTTCCATTTCTCGTCCATGTTTTGTGTTGCAGAAGAGAGAGAAAGA 409 Query 416 GAGAATGA----GAGCTTCTGACTCAGATGGAGGGTTTCTGGTTTTATT-TT--ACTTTT 468 |||||||| |||||||||||||||||||||||| ||||||||| || || |||||| Sbjct 410 GAGAATGAACTAGAGCTTCTGACTCAGATGGAGGGTCTCTGGTTTTTTTGTTTTACTTTT 469 Query 469 AGTTTGATTGTGAGTTTGTGGTGATTGAGCCAGAAGGAGAGATAGTGATCTagagaga-- 526 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 470 AGTTTGATTGTGAGTTTGTGGTGATTGAGCTAGAAGGAGAGATGGTGATCTAGAGAGAGA 529 Query 527 tggagagagagagagaAAGGGAAGCAAAGAGAGGGATAGT 566 |||||||||||||| || || ||||||||||||||||||| Sbjct 530 TGGAGAGAGAGAGA-AA-GGAAAGCAAAGAGAGGGATAGT 567 > Ahg481830 jgi|Araly1|481830|fgenesh2_kg.4__890__AT2G29125.1 Length=675 Score = 76.8 bits (41), Expect = 2e-13 Identities = 133/173 (77%), Gaps = 24/173 (14%) Strand=Plus/Minus Query 39 AATCTCTTCTTACAATGTACTAGTATGGAAACTTGTGGCAACTTAGAGTAGAGAATCAAA 98 ||||||||||||||||||||| |||||||||| | |||| | | ||||||| Sbjct 562 AATCTCTTCTTACAATGTACTTGTATGGAAAC------C--CTTA-A-T----AATCAAA 517 Query 99 CTGATCTAATCATTCaaaaaaaGAGAATAAAAATG--CATG-AGATCTATATCTACCTAG 155 |||||||||| | ||| ||| | || ||||| | | | |||| | ||||| || Sbjct 516 CTGATCTAAT--TACAAGGAAACA-AA-AAAAAGGAAGAAGAAGATGAAGATCTAGTTAA 461 Query 156 GAA--T-CATGTTTATGCCAACATACAAGCATAGCCACACACCTTCTCATGAT 205 ||| | ||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 460 GAATCTCCATGTTTGTGCCAACAAACAAGCATAGCCACACACCTTCTCATGAT 408 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24284298129 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5