BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07485.1
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470775 jgi|Araly1|470775|fgenesh2_kg.1__729__AT1G07485.1 758 0.0
Ahg481830 jgi|Araly1|481830|fgenesh2_kg.4__890__AT2G29125.1 76.8 2e-13
> Ahg470775 jgi|Araly1|470775|fgenesh2_kg.1__729__AT1G07485.1
Length=567
Score = 758 bits (410), Expect = 0.0
Identities = 528/580 (91%), Gaps = 27/580 (5%)
Strand=Plus/Plus
Query 1 GTCTTATCAAAATTAATAGT-AATATATTATCAAAAAAGAATCTCTTCTTACAATGTACT 59
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GTCTTATCAAAATTAATAGTAAATATATTATC--AAAAGAATCTCTTCTTACAATGTACT 58
Query 60 AGTATGGAAACTTGTGGC-AACTTAGAGTAGAGAATCAAACTGATCTAATCATTCaaaaa 118
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 59 AGTATGGAAACTTGTAGCAAACTTAGAGTAGAGAATCAAACTGATCTAATCATT----TA 114
Query 119 aaGAGAATAAAAATGCATGAGATCTATATCTACCTAGGAATCATGTTTATGCCAACATAC 178
|| | || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 115 AA-A-AA-AAAAATGCATGAGATC--TATCTACCTAGGAATCATGTTTATGCCAACATAC 169
Query 179 AAGCATAGCCACACACCTTCTCATGATATTGAAGACGACGAAGATGAAGGCACTGAGCAT 238
||||||||||||||||||||||||||| | |||| || ||||| |||||||||||||||
Sbjct 170 AAGCATAGCCACACACCTTCTCATGATGTAAAAGAGGAAGAAGAAGAAGGCACTGAGCAT 229
Query 239 TTGGTGGATGAGCTCCGTACGAATGCAGGAGCTTTTGAGGAGGAAGCGCTTGTGGAGAAG 298
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 230 TTGGTGGATGAGCTTCGTAAGAATGCAGGAGCTTTTGAGGAGGAAGCACTTGTTGAGAAG 289
Query 299 CTTCTAGAGAACTTGGATTTAGATGAAGTTGAAGAAGATGAACACGACGCAGCTAATGCA 358
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 290 CTTCTAGAGAATTTGGATTTAGATGAAGTTGAAGAAGAGGAACATGACGCAGCTAATGCA 349
Query 359 TCCTTTTTCGACAGCCTCCACTTCTCGTCCATCTTT-GTGTTGCAGAAGAGAGAGG--GA 415
||||| ||||||||| |||| ||||||||||| ||| |||||||||||||||||| ||
Sbjct 350 TCCTTCTTCGACAGCTTCCATTTCTCGTCCATGTTTTGTGTTGCAGAAGAGAGAGAAAGA 409
Query 416 GAGAATGA----GAGCTTCTGACTCAGATGGAGGGTTTCTGGTTTTATT-TT--ACTTTT 468
|||||||| |||||||||||||||||||||||| ||||||||| || || ||||||
Sbjct 410 GAGAATGAACTAGAGCTTCTGACTCAGATGGAGGGTCTCTGGTTTTTTTGTTTTACTTTT 469
Query 469 AGTTTGATTGTGAGTTTGTGGTGATTGAGCCAGAAGGAGAGATAGTGATCTagagaga-- 526
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 470 AGTTTGATTGTGAGTTTGTGGTGATTGAGCTAGAAGGAGAGATGGTGATCTAGAGAGAGA 529
Query 527 tggagagagagagagaAAGGGAAGCAAAGAGAGGGATAGT 566
|||||||||||||| || || |||||||||||||||||||
Sbjct 530 TGGAGAGAGAGAGA-AA-GGAAAGCAAAGAGAGGGATAGT 567
> Ahg481830 jgi|Araly1|481830|fgenesh2_kg.4__890__AT2G29125.1
Length=675
Score = 76.8 bits (41), Expect = 2e-13
Identities = 133/173 (77%), Gaps = 24/173 (14%)
Strand=Plus/Minus
Query 39 AATCTCTTCTTACAATGTACTAGTATGGAAACTTGTGGCAACTTAGAGTAGAGAATCAAA 98
||||||||||||||||||||| |||||||||| | |||| | | |||||||
Sbjct 562 AATCTCTTCTTACAATGTACTTGTATGGAAAC------C--CTTA-A-T----AATCAAA 517
Query 99 CTGATCTAATCATTCaaaaaaaGAGAATAAAAATG--CATG-AGATCTATATCTACCTAG 155
|||||||||| | ||| ||| | || ||||| | | | |||| | ||||| ||
Sbjct 516 CTGATCTAAT--TACAAGGAAACA-AA-AAAAAGGAAGAAGAAGATGAAGATCTAGTTAA 461
Query 156 GAA--T-CATGTTTATGCCAACATACAAGCATAGCCACACACCTTCTCATGAT 205
||| | ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 460 GAATCTCCATGTTTGTGCCAACAAACAAGCATAGCCACACACCTTCTCATGAT 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24284298129
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5