BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07500.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919476 jgi|Araly1|919476|scaffold_100757.1                        158    2e-38


> Ahg919476 jgi|Araly1|919476|scaffold_100757.1
Length=294

 Score =  158 bits (85),  Expect = 2e-38
 Identities = 94/98 (96%), Gaps = 1/98 (1%)
 Strand=Plus/Plus

Query  123  GGGAACCACCGAAGAAGGGATATTTTCAGCCGCCGGATCTAGACTTGTTCTTCTCGGTGG  182
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  178  GGGAACCACCGAAGAAGGGATATTTTCAGCCACCGGATCTAGACTTGTTCTTCTCGGTGG  237

Query  183  TAGCAGCCTCCCAAGCGGCAACCTAGTTGCGCTTAGAT  220
            | ||||||||| || |||||||||||||||||||||||
Sbjct  238  TGGCAGCCTCCAAA-CGGCAACCTAGTTGCGCTTAGAT  274



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5