BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07530.1
Length=2787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910443 jgi|Araly1|910443|Al_scaffold_0001_697 3415 0.0
Ahg933377 jgi|Araly1|933377|scaffold_401365.1 291 3e-77
> Ahg910443 jgi|Araly1|910443|Al_scaffold_0001_697
Length=4482
Score = 3415 bits (1849), Expect = 0.0
Identities = 2121/2248 (94%), Gaps = 35/2248 (2%)
Strand=Plus/Plus
Query 258 TGGATCCATGGACGAGTTGGATTTCAATAAGGACTTTGATTTGCCTCCCTCCTCAAACCA 317
|||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 18 TGGATCCATGGACGAGTTCGATTTCAATAAGGACTTTGATTTGCCT--C-CCTCAAACCA 74
Query 318 AACCTTAGGTTTAGCTAATGGGTTCTATTTAGATGACTTAGATTTCTCATCCTTGGATCC 377
||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||
Sbjct 75 AACCTTAGGTTTAGCTAATGGATTCTATCTAGATGACTTAGATTTCACTTCCTTGGATCC 134
Query 378 TCCAGAGGCATATCCCTCCCAGaacaacaacaacaacaacatcaacaacaaAGCTGTAGC 437
|||||||||||||||||||||| ||| || | | |||||||||||||| | |
Sbjct 135 TCCAGAGGCATATCCCTCCCAG---------AACTAC-A-A-CAACAACAAAGCTGCATC 182
Query 438 AGGAGATCTGTTATCATCTTCATCTGATGACGCTGATTTCTCTGATTCTGTTTTGAAGTA 497
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 183 AGGAGATCTGTTATCATCTCCATCTGATGACGCTGATTTCTCTGATTCGGTTTTGAAGTA 242
Query 498 TATAAGCCAAGTTCTTATGGAAGAGGATATGGAAGAGAAGCCTTGTATGTTTCATGACGC 557
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 243 CATAAGCCAAGTTCTTATGGAAGAGGACATGGAAGAGAAGCCTTGTATGTTTCATGACGC 302
Query 558 TTTGGCTCTTCAAGCTGCTGAGAAATCTCTCTATGAGGCTCTTGGTGAGAAATACCCTTC 617
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 303 CTTGGCTCTTCAAGCTGCTGAGAAATCTCTCTACGAGGCTCTCGGTGAGAAATACCCTTC 362
Query 618 TTCGTCTTCTGCTTCTTCTGTGGATCATCCTGAGAGATTGGCTAGTGATAGCCCTGACGG 677
||| ||||||| | || |||||| |||||||||||||||||| |||||||||||||||
Sbjct 363 TTCTTCTTCTG-GT-TT-TGTGGACCATCCTGAGAGATTGGCTTCTGATAGCCCTGACGG 419
Query 678 TTCTTGTTCAGGTGGTGCTTTTAGTGATTACGCTAGCACCACTACCACTACTTCCTCTGA 737
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TTCTTGTTCCGGTGGTGCTTTTAGTGATTACGCTAGCACCACTACCACTACTTCTTCTGA 479
Query 738 TTCTCACTGGAGTGTTGATGGTTTGGAGAATAGACCTTCTTGGTTACATACACCTATGCC 797
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TTCACACTGGAGTGTTGATGGTTTGGAGAATAGACCTTCCTGGTTACATACACCTATGCC 539
Query 798 GAGTAATTTTGTTTTCCAGTCTACTTCTAGGTCCAACAGTGTCACCggtggtggtggtgg 857
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 540 GAGTAATTTTGTTTTCCAGTCCACTTCTAGGTCCAACAGTGTCACC------GGTGGTGG 593
Query 858 tggtAATAGTGCGGTTTACGGTTCAGGTTTTGGCGATGATTTGGTTTCGAATATGTTTAA 917
|||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 594 TGGTAATACTGCGGTTTACGGGTCTGGTTTCGGCGATGATTTGGTTTCGAATATGTTTAA 653
Query 918 AGATGA-TGAATTGGCTATGCAGTTCAAGAAAGGGGTTGAGGAAGCTAGTAAGTTCCTTC 976
||| | ||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 654 TGAT-AGTGAATTGGCTATGCAGTTCAAGAGAGGGGTAGAGGAAGCGAGTAAGTTCCTTC 712
Query 977 CTAAGTCTTCTCAGCTCTTTATTGATGTGGATAGTTACATCCCTATGAATTCTGGTTCCA 1036
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 713 CTAAATCTTCTCAGCTCTTTATTGATGTGGATAGTTACATCCCTAAGAATTCGGGTTCCA 772
Query 1037 AGGAAAATGGTTCTGAGGTTTTTGTTAAGACGGAGAAGAAAGATGAGACAGAGCATCATC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 773 AGGAAAATGGTTCTGAGGTTTTTGTTAAGACGGAGAAGAAAGATGAGACAGAG------C 826
Query 1097 ATCATCATAGCTATGCTCCTCCTCCCAACAGATTAACTGGTAAGAAAAGCCATTGGCGCG 1156
|||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 827 ATCATCATAGCTCTGCTCCTCCTCCCAACAGATTGACTGGGAAGAAAAGCCATTGGCGCG 886
Query 1157 ACGAAGATGAAGATTTCGTTGAAGAAAGAAGTAACAAGCAATCAGCTGTTTATGTTGAGG 1216
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AAGAAGATGAAGATTTCGTCGAAGAAAGAAGTAACAAGCAATCAGCTGTTTATGTTGAGG 946
Query 1217 AAAGCGAGCTTTCTGAAATGTTTGATAAGATCTTGGTATGTGGCCCTGGGAAACCTGTAT 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 947 AAAGCGAGCTTTCTGAAATGTTTGATAAGATCTTGGTATGTGGCCCTGGGAAACCCGTAT 1006
Query 1277 GCATTCTTAACCAGAACTTTCCTACAGAATCCGCTAAAGTCGTGACCGCACAGTCAAATG 1336
|||||||||||||||| ||||| |||||| |||| |||||| |||||||||||||||||
Sbjct 1007 GCATTCTTAACCAGAAGTTTCCAACAGAACCCGCCGAAGTCGAGACCGCACAGTCAAATG 1066
Query 1337 GAGCAAAGATTCGTGGGAAGAAATCAACTTCTACTAGTCATAGTAACGATTCTAAGAAAG 1396
||||||||||||||||||||||||||||| ||| || ||||||||| || ||||||||||
Sbjct 1067 GAGCAAAGATTCGTGGGAAGAAATCAACTACTAGTAATCATAGTAATGACTCTAAGAAAG 1126
Query 1397 AAACTGCTGATTTGAGGACTCTTTTGGTGTTATGTGCACAAGCTGTATCAGTGGATGATC 1456
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1127 AAACTGCTGATTTGAGGACTCTTCTGGTGTTATGTGCACAAGCTGTATCAGTGGATGATC 1186
Query 1457 GTAGAACCGCCAACGAAATGCTAAGGCAGATACGAGAGCATTCTTCGCCTCTAGGCAATG 1516
||||||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 1187 GTAGAACTGCCAATGAAATGCTGAGACAGATACGGGAGCATTCTTCGCCTCTAGGCAATG 1246
Query 1517 GTTCAGAGCGGTTGGCTCATTATTTTGCAAATAGTCTTGAAGCACGCTTAGCTGGGACCG 1576
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1247 GGTCAGAGCGATTGGCTCATTATTTTGCAAATAGTCTTGAAGCACGCTTAGCTGGGACTG 1306
Query 1577 GTACACAGATCTACACCGCTTTATCTTCGAAGAAAACGTCTGCAGCAGACATGTTGAAGG 1636
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1307 GTACACAGATCTACACCGCTTTATCTTCGAAGAAAACATCTGCAGCAGACATGTTGAAGG 1366
Query 1637 CTTACCAGACATACATGTCGGTCTGCCCTTTCAAGAAAGCTGCTATCATATTTGCTAACC 1696
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1367 CTTACCAGACATACATGTCGGTCTGTCCGTTCAAGAAAGCTGCTATCATATTTGCTAACC 1426
Query 1697 ACAGCATGATGCGTTTCACTGCAAACGCCAACACGATCCACATAATAGATTTCGGAATAT 1756
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1427 ACAACATGATGCGTTTCACTGCAAACGCCAACACGATCCACATAATAGATTTCGGGATAT 1486
Query 1757 CTTACGGTTTTCAGTGGCCTGCTCTGATTCATCGCCTCTCGCTCAGCAGACCTGGTGGTT 1816
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1487 CTTACGGTTTTCAGTGGCCTGCTCTGATTCATCGCCTCTCGCT---CAGACCTGGTGGGT 1543
Query 1817 CGCCTAAGCTTCGAATTACCGGTATAGAGCTTCCTCAGCGCGGTTTTAGACCAGCGGAAG 1876
||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 1544 CGCCTAAGCTTCGCATTACTGGCATAGAGCTTCCTCAGCGTGGTTTTAGACCAGCGGAAG 1603
Query 1877 GAGTTCAGGAGACAGGTCATCGCTTGGCTCGATACTGTCAGCGACACAATGTTCCGTTTG 1936
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1604 GAGTTCAGGAGACGGGTCATCGTTTGGCTCGATACTGTCAGCGACACAATGTTCCGTTTG 1663
Query 1937 AGTACAACGCAATTGCTCAGAAATGGGAAACGATCCAAGTCGAAGACTTAAAGCTTCGAC 1996
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1664 AGTACAACGCAATTGCTCAGAAATGGGAAACGATCAAAGTCGAAGATTTAAAGCTTCGAC 1723
Query 1997 AAGGAGAGTATGTGGTTGTGAACTCTTTGTTCCGTTTCAGGAACCTTCTAGATGAGACCG 2056
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1724 AAGGAGAGTATGTGGTTGTAAACTCTTTGTTCCGTTTTAGGAACCTTCTAGATGAGACCG 1783
Query 2057 TTCTGGTAAACAGCCCGAGAGATGCAGTTTTGAAGCTGATAAGAAAAATAAACCCGAATG 2116
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 1784 TTCTGGTAAACAGCCCGAGAGATGCGGTTTTGAAACTGATAAGAAAAGTAAACCCGAATG 1843
Query 2117 TCTTCATTCCAGCGATCTTAAGCGGGAATTACAACGCGCCATTCTTTGTCACGAGGTTCA 2176
||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1844 TCTTCATCCCTGCGATCCTAAGCGGGAATTACAACGCGCCATTTTTTGTCACGAGGTTCA 1903
Query 2177 GAGAAGCGTTGTTTCATTACTCGGCTGTGTTTGATATGTGTGACTCGAAGCTAGCTAGGG 2236
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1904 GAGAAGCGTTGTTTCATTACTCGGCTGTGTTTGATTTGTGTGACTCGAAGCTAGCAAGGG 1963
Query 2237 AAGACGAGATGAGGCTGATGTATGAGAAAGAGTTTTATGGGAGAGAGATTGTGAATGTTG 2296
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1964 AAGACGAGATGAGGCTGATGTATGAGAAAGAGTTTTATGGGAGAGAGATTATTAATGTTG 2023
Query 2297 TGGCTTGTGAAGGAACAGAGAGAGTGGAGAGACCAGAGACATATAAGCAGTGGCAGGCGA 2356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 TGGCTTGTGAAGGAACGGAGAGAGTGGAGAGACCAGAGACATATAAGCAGTGGCAGGCGA 2083
Query 2357 GACTGATCCGAGCCGGATTTAGACAGCTTCCGCTTGAGAAGGAACTGATGCAGAATCTGA 2416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 GACTGATCCGAGCCGGATTTAGACAGCTTCCGCTTGAGAAGGAACTGATGCAGAATCTGA 2143
Query 2417 AGTTGAAAATCGAAAACGGGTACGATAAAAACTTCGATGTTGATCAAAACGGTAACTGGT 2476
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 AGTTGAAAATCAAAAACGGGTACGATAAAAACTTCGATGTTGATCAAAACGGTAACTGGT 2203
Query 2477 TACTTCAAGGGTGGAAAGGTAGAATCGT 2504
| ||||||||||||||||||||||||||
Sbjct 2204 TGCTTCAAGGGTGGAAAGGTAGAATCGT 2231
> Ahg933377 jgi|Araly1|933377|scaffold_401365.1
Length=4008
Score = 291 bits (157), Expect = 3e-77
Identities = 411/527 (78%), Gaps = 43/527 (8%)
Strand=Plus/Plus
Query 469 GCTGATTTCTCTGATTCTGTTTTGAAGTATATAAGCCAAGTTCTTATGGAAGAGGATATG 528
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 182 GCTGATTTCTCTGATTCTGTTTTGAAGTACATAAGTCAAGTTCTTATGGAAGAAGATATG 241
Query 529 GAAGAGAAGCCTTGTATGTTTCATGACGCTTTGGCTCTTCAAGCTGCTGAGAAATCTCTC 588
||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 242 GAAGATAAGCCTTGTATGTTTCATGATGCTTTGTCTCTTCAAGCAGCTGAGAAATCTCTC 301
Query 589 TATGAGGCTCTTGGTGAGAAATACCCTTCTTCGTCTTCTGCTTCTTCTGTGGATCATCCT 648
||||| ||||| || ||||| ||| | || | | | |||| | |||| |||
Sbjct 302 TATGAAGCTCTCGGCGAGAAGTACGCGG-TT-GA-T---GATTCT---G---ATCAGCCT 349
Query 649 GAGAG-ATTGGCTAGTGATAGCCCTGAC-GGTTCTT-GTTCAGGTGGTGCTT-TTAGTGA 704
|| | | |||| | || | | |||| | || | | |||| ||| ||| ||
Sbjct 350 TTGACTACTA-CTAGCCTT-GCTCA-ATTGGTTAGTAGTCCTGATGGTTCTTCTTA-TGC 405
Query 705 TTACGCTAGCACCACTACCACTACTTCCTCTGATTCTCACTGGAGTGTTGATGGTTTGGA 764
|| | |||| ||| || | ||||| |||||||| || |||||| ||||| |||||||
Sbjct 406 TT-CA--AGCATCACAAC-A--ACTTCATCTGATTCACAATGGAGTTTTGATTGTTTGGA 459
Query 765 GAATAG-A--CCTTCTT---GGTTACATACACCTATGCCGAGTAATTTTGTTTTCCAGTC 818
||||| | ||||||| |||| || ||||| || |||||||| || ||||| |||||
Sbjct 460 GAATAATAGGCCTTCTTCTTGGTTGCAGACACCGATCCCGAGTAACTTCGTTTTTCAGTC 519
Query 819 TACTTCTAGGTCCAAC-AGTGTCACCgg-tggtggtggtggtggtAATAGTGCGGTTTAC 876
|||||||| | ||| ||| ||| | || || |||| |||||||| | |||||| |
Sbjct 520 TACTTCTAC-TAGAACCAGTC-CACAGTCTGTTGTTGGTAGTGGTAAT-G--CGGTTTTC 574
Query 877 GGTTCAGGTTTTGGCGATGATTTGGTTTCGAATATGTTTAAAGAT-GATGAATTGGC-TA 934
|| ||| ||||| ||| |||||||| ||| ||||||||||| ||| | |||||||| |
Sbjct 575 GGGTCAAGTTTTAGCGGTGATTTGGCTTCTAATATGTTTAACGATAGC-GAATTGGCGT- 632
Query 935 TGCAGTTCAAGAAAGGGGTTGAGGAAGCTAGTAAGTTCCTTCCTAAG 981
| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct 633 TACAATTCAAGAAAGGGATGGAGGAAGCTAGTAAGTTCCTTCCTAAG 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105167166445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5