BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07540.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910444 jgi|Araly1|910444|Al_scaffold_0001_698 3025 0.0
> Ahg910444 jgi|Araly1|910444|Al_scaffold_0001_698
Length=1887
Score = 3025 bits (1638), Expect = 0.0
Identities = 1811/1895 (96%), Gaps = 10/1895 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTTGCAAAAGAGGCCCGATTATGGATTCAATGGCTATGAGGTGCCTCACACACCT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTTGCAAAAGAGGCTCGATTATGGATTCAATGGCTATGAGGTGCCTCACACACCT 60
Query 61 CGAGCTGCCAGATCACCAAGAAAGAGTGCTTTCAAGAAGAAAAGCGAAAACCATCAAATA 120
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGCCGCTAGATCACCAAGAAAGAGTGCTTTCAAGAAGAAAAGCGAAAACCATCAAATA 120
Query 121 TCGTCTTTCGATTTGTTGGCTGCAGTAGCTGGAAAACTGCTGCTTGAAGGTGGGAATTCT 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TCGTCTTTCGATTTGTTGGCTGCAGTAGCTGGAAAACTGTTGCTTGAAGGTGGGAATTCT 180
Query 181 TCTTCCTCAAGTAACAATACCTCTGGTAATAATGAAGATCAGTGTGCAGTTAAGAAAGAG 240
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TCTTCCTCAAGTAACAACACCTCTGGTAATAATGAAGATCAGTGTGCCGTTAAGAAAGAA 240
Query 241 CCGCTTAACGGCGGCGATATAATGGTGGAAGAAGAGACTACAAATTCTGATCATGATAAT 300
|||||||| ||| || || |||||||||||||||||||||| |||| |||||||||||||
Sbjct 241 CCGCTTAATGGCAGCAATCTAATGGTGGAAGAAGAGACTACTAATTGTGATCATGATAAT 300
Query 301 AATAATGCTGAACGGAGTTTCTTTGTCTCTGAGATTCTTCAAAAATCTCATGAAATGCAA 360
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 301 AATAATGCTGAAAGGAGTTTCTTTGTCTCTGAGATTCTTCCAAAATCTCATGAAATACAA 360
Query 361 AGCTTTAATAGATCTCCAAGTCCCCTTAAAGAGTTCCATTTTGGATCTTCTTCTGGTATA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCTTTAACAGATCTCCAAGTCCCCTTAAAGAGTTCCATTTTGGATCTTCTTCTGGTATA 420
Query 421 ACTTCTGATTCCTCTGAGAAGTTTGAAACTCAAGAATTGGCGTATGATGAATCCAAGATC 480
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTCTGATTCCTCGGACAAGTTTGAAACTCAAGAATTGGCGTATGATGAATCCAAGATC 480
Query 481 AATAATGGTGATTGCTATAGGTCAGAGTCTAATGATAAGAAATCAATGCTTGGAGGGTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 481 AATAATGGTGATTGCTATAGGTCAGAGTCTAATGATAAGAAATCAATGCTTGGGGGGCTA 540
Query 541 AATTTTGAAGCAAAGTTATCAAGGAATGTTGTAGGTAAGGATGAGAAACATATAGGTAGT 600
|||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 541 AATTTTGAAGCAAAGTTAACAAGGAATGTTTTAGCCAAGGATGAGAATCATATAGGTAGT 600
Query 601 GGATTCAGGAAACCTATTCCCCAAAATCCTTCAACATGCTCCGATGATGTAGATTTACAC 660
|||||||| ||||| |||||||||||||||||| ||||||| |||| | |||||||||||
Sbjct 601 GGATTCAGAAAACCAATTCCCCAAAATCCTTCAGCATGCTCTGATGCTATAGATTTACAC 660
Query 661 GGTAAGGAAAATGATGATGGCGAAAACTTCTCAGCCTGTTACAGAACAAAATCATTTAGG 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GGTAAGGAAAATGATGATGGCGAAAACTTCTCAGCATGTTACAGAACAAAATCATTTAGG 720
Query 721 TCAACTCTGCGTATTGGAGATAGAAGAATAAGGAAAGTTTGGGCTTCCAAGTATTGTAAA 780
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 TCAACTCTGCGTATCGGAGATAGAAGAATAAGGAAAGTTTTAGCTTCCAAGTATTGTAAA 780
Query 781 GTCCCTCCAAAGCTGAAAGATACAACAGTAACTAATTCAGACTTGGACTTGAAGTCTGAT 840
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 781 GTCCCTCCAAAGCTGAAAGATACAACGGTACCTAATTCAGACTTGGACTTGAAGTCTGAT 840
Query 841 TACTATAGCAAGAAACATTGTCTTAAAAGCTTAAGATCAGAGAGGAACTATCCAATAAAG 900
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 841 TACTATAGCAAGAAACATTGTCTTAAAAGCTTAAGATCAGAGAGAAACTATCCAATCAAG 900
Query 901 AAAAGGAGATACTTTGATGGTTATACAGCATCACAATCCGAGGAAACAAATAAAAATGAA 960
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 901 AAAAGAAGATACTTTGATGGTTATACAGCATCACAATCCGAGGAAACAAGTAAAAATGAA 960
Query 961 GGCCAGT-CTGGTTCACCTCGAAAGGCTTCAGCTTTTCTATCATCCATAGCTTGTCAGAA 1019
|||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 961 GGCC-TTCCTGGTTCACCTCGAAAGGCTTCAGCTTTTCTATCTTCCATAGCTTGTCAGAA 1019
Query 1020 GCAGCCTGCAGCATTCCAATCACCAAGAGATTCTAATAACGTGAAACTTGGAATCAAGTC 1079
||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1020 GCA-AC--CAGCATTCCAATCATCAAGAGATTCTAATAACGTGAAACTTGGGATCAAGTC 1076
Query 1080 ATTTAGAGTCCCTGAACTTTTCATTGAAATTCCAGAGACAGCTACTGTCGGTTCGCTAAA 1139
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1077 ATTTAGAGTTCCTGAACTTTTCATTGAAATTCCTGAGACCGCTACTGTCGGTTCGCTAAA 1136
Query 1140 GAGGACAGTGTTGGAAGCTGTGACCTCGATACTTGGAGGTGGATTACGCATAGGTGTTCT 1199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GAGGACAGTCTTGGAAGCTGTGACCTCGATACTTGGAGGTGGATTACGCATAGGTGTTCT 1196
Query 1200 GGTTCATGGGAAAAAGGTTAGAGACGACAGTAAAATGCTTCTACAGACTGGACTCTCTCT 1259
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 TGTTCATGGAAAAAAGGTTAGAGACGACAGTAAAATGCTTCTTCAGACTGGACTCTCTCT 1256
Query 1260 AGACACTCTTTCAGACACTTTAGGGTTTTGTCTTGAGCCAAATCCTCCACAATCCACAAA 1319
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 AGACACTCTTTCAGATAATTTAGGGTTTTGTCTTGAGCCCAATCCTCCACAATCCACAAA 1316
Query 1320 ACCACTATCTCCTGAAGATTCTGACTTTGCACGTCCCTGTAATGTACCTCACACTCTAAC 1379
||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1317 ACCGCTTTCTACTGAAGATTCTGACTTTGCACGTCCATGTAATGTACCTCACACTCTAAC 1376
Query 1380 AAGGTGTCTCCCATCACCAGGGAAGCATGCTAAACCGAGTAACTCTGTAGAAAGTGACCT 1439
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1377 AAGGTGTTTCCCATCACCAGGGAAGCATGCTAAACCGAGTAATTCTGTAGAAAGTGACCT 1436
Query 1440 TGACTCCAAACCCTCTGCACCAAATAGGGGTAAAACCATCTACTCGAGAGCCTT-GATTC 1498
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1437 TGACTCCAAACCCTCTGCACCAAATAGGGGTAAAACCATCTACTCCAGAGCCTTGGA-TC 1495
Query 1499 CTGTATCTCCTCTGCATGCTCAGGCGTTGACAGTAGTCCCACCTCGGAAAACCAAGCGAT 1558
||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1496 CTG--TC-CCTCTACATGCTCAGGCTTTGACAGTAGTCCCACCTCGGAAAACCAAGCGAT 1552
Query 1559 CTGAAGTGGCACAGCGTAGGATCCGTCGACCTTTTTCTGTTGCTGAAGTAGAGGCCCTTG 1618
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1553 CTGAGGTGGCACAGCGTAGAATCCGTCGACCTTTTTCTGTTGCCGAAGTAGAGGCCCTTG 1612
Query 1619 TTCAAGCTGTGGAGAGACTTGGGACCGGAAGGTGGCGTGACGTAAAATTGCGAGCTTTTG 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TTCAAGCTGTGGAGAGACTTGGGACCGGAAGGTGGCGTGACGTAAAATTGCGAGCTTTTG 1672
Query 1679 ATAATGCTAAGCACCGTACTTACGTTGATTTGAAGGACAAATGGAAGACGCTGGTGCACA 1738
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1673 ATAATGCTAAGCACCGAACTTATGTTGATTTGAAGGACAAATGGAAGACGTTGGTGCACA 1732
Query 1739 CAGCAAGAATATCACCGCAACAAAGGAGAGGTGAGCCAGTTCCACAGGAGCTCTTAGACC 1798
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CAGCAAGAATATCGCCGCAACAAAGGAGAGGTGAGCCAGTTCCACAGGAGCTCTTAGACC 1792
Query 1799 GGGTACTAACGGCTCATGCCTACTGGTCCCAGCAACAGGGGAAACACCAGTTACTAGAGG 1858
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1793 GGGTACTAACGGCTCATGCCTACTGGTCCCAGCAACAGGGGAAACACCAGTTGCTAGAGG 1852
Query 1859 GACCCCAGCAGCTCGAGACCAGTCTTGGTCTATAG 1893
|||||||||||||||||||||||||||||||||||
Sbjct 1853 GACCCCAGCAGCTCGAGACCAGTCTTGGTCTATAG 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5