BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07550.1
Length=2700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919481 jgi|Araly1|919481|scaffold_100762.1 584 1e-165
Ahg931165 jgi|Araly1|931165|scaffold_303622.1 183 4e-45
> Ahg919481 jgi|Araly1|919481|scaffold_100762.1
Length=893
Score = 584 bits (316), Expect = 1e-165
Identities = 377/406 (93%), Gaps = 6/406 (1%)
Strand=Plus/Plus
Query 669 GTTATCCCCAAGATGTGCATGATAGAATTTGGGTGCCGTTGATATTACCAGAATGGACGC 728
|||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 128 GTTATCCCCAAGATGTGCATGATAGAATTTGGATGCTGTCGATATTACCAGAATGGACGC 187
Query 729 ATATAAACACAAGTCACCACGTTATTGATTCTATAGATGGCTATGACCCACCACAAGATG 788
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 188 ATATAAACACAACCCACCACGTTATTGATTCTATAGGTGGCTATGACCCACCACAAGATG 247
Query 789 TACTTAGGACCGGCGCCATGCCCGCTAATGCCAGTGATCCAATGACCATTACCTGGAATT 848
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 248 TACTTAGGACCGGCGCCATGCCGGCTAATGCCAGTGATCCAATGACCATTACCTGGAGTT 307
Query 849 TGAAGACGGCTACTGACCAGGTTTACGGTTATATTTACATCGCC-GAGATCATGGAAGTC 907
|| |||||||||||||||| ||||| ||||||||||||| || | ||||||| | |||||
Sbjct 308 TGGAGACGGCTACTGACCAAGTTTATGGTTATATTTACA-CGGCTGAGATCACGAAAGTC 366
Query 908 CAGGCCAATGAAACTAGAGAATTCGAAGTTGTGGTAAATAATAAAGTTCATTTCGATCCT 967
| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 367 CCGGCCAATGAAACTAGAGAATTCGAAGTTGTGGCAAATGATAAAGTTCATTTCGATCCG 426
Query 968 TTCCGTCCTACCA-GATTTGAAGCACA-AGTTATGTTCAACAATGTACCACTGACATGCG 1025
||| ||||||||| | ||||||||||| | || |||||||| ||||||||||||||||||
Sbjct 427 TTCAGTCCTACCAAG-TTTGAAGCACAGATTT-TGTTCAACGATGTACCACTGACATGCG 484
Query 1026 AGGGAGGATTTTGTCGTCTGCAACTTATAAAAACTCCGAAATCGAC 1071
||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 485 AGGGAGGATTTTGTCGTGTGCAACTTATAAAAACTCCGAGATCGAC 530
Score = 440 bits (238), Expect = 2e-122
Identities = 248/253 (98%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 1294 AGATTTGTCTTCAAGTGGATTAAATGGAGTTATACCACCTAGCATACAAAATCTAACTCA 1353
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 531 AGATTTGTCTTCAAGTGGATTAAATGGAGTTATATCACCTAGCATACAAAATCTAACTCA 590
Query 1354 ACTTCAAGAACTGGACCTGTCCCAAAACAACTTGACTGGTAAAGTGCCTGAATTTCTAGC 1413
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 591 ACTTCAAGAACTGGACTTGTCCCAAAACAACTTGACTGGTGAAGTGCCTGAATTTCTAGC 650
Query 1414 CAAGATGAAATATTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC 1473
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CAAGATGAAGTCTTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC 710
Query 1474 TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT 770
Query 1534 TTGTGTGTCTTGC 1546
|||||||||||||
Sbjct 771 TTGTGTGTCTTGC 783
Score = 152 bits (82), Expect = 1e-35
Identities = 96/103 (93%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 29 TGAACGAAGAAATCATCAAAAATGGACACTTGCACCAGGCTTCTGTTTGCTGCGTGTGCC 88
||||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 1 TGAACCCAGAAATCATCAAAAATGGAGACTCACACCAAGCTTCTGTTTGCTGCGTGTGCC 60
Query 89 ACTTTATCCATCTTACATCTTGTTCAATCTCAGAATCAACAAG 131
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ACTTTATCCATCATACATCTTGTTCAATCTCAGAATCAACAAG 103
Score = 115 bits (62), Expect = 2e-24
Identities = 68/71 (96%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1595 GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTTTAAGAAGGAGAAAGCCATCTGCT 1654
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 782 GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTATAAGAAAGAGAAAGCCATCTGCT 841
Query 1655 GGGAAAGTTAC 1665
||||||| |||
Sbjct 842 GGGAAAGGTAC 852
> Ahg931165 jgi|Araly1|931165|scaffold_303622.1
Length=351
Score = 183 bits (99), Expect = 4e-45
Identities = 163/193 (84%), Gaps = 8/193 (4%)
Strand=Plus/Plus
Query 485 GAGGAGATCATTCACATCACAAGGTCTAACATCTTGGACATATGTCTCGTCAAGACAGGG 544
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 108 GAGGAGATCATTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTAAAAACAGGG 167
Query 545 ACGAGTACACCAATGATATCATCCATAGAGTTGA-GACCCT-TGCTATATGATACTTATA 602
||||||||||||||||||||| ||||||| | | |||| | ||| ||||||||||||||
Sbjct 168 ACGAGTACACCAATGATATCAGCCATAGAACT-ACGACC-TATGCGATATGATACTTATA 225
Query 603 TTGCTCAAACCGGTTCCTTGAGGAATTATA-ACCGGTTCTATTTCACCGATTCAAACAA- 660
||||| |||||| ||||| | || |||| | || ||| ||| || ||||| ||||
Sbjct 226 CTGCTCGAACCGGATCCTTAAAGA-TTATTGAGCGCACCTACTTCGCCAATTCAGACAAG 284
Query 661 CTATATACGTTAT 673
||| ||||| |||
Sbjct 285 CTA-ATACGGTAT 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101853315130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5