BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07550.1 Length=2700 Score E Sequences producing significant alignments: (Bits) Value Ahg919481 jgi|Araly1|919481|scaffold_100762.1 584 1e-165 Ahg931165 jgi|Araly1|931165|scaffold_303622.1 183 4e-45 > Ahg919481 jgi|Araly1|919481|scaffold_100762.1 Length=893 Score = 584 bits (316), Expect = 1e-165 Identities = 377/406 (93%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 669 GTTATCCCCAAGATGTGCATGATAGAATTTGGGTGCCGTTGATATTACCAGAATGGACGC 728 |||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| Sbjct 128 GTTATCCCCAAGATGTGCATGATAGAATTTGGATGCTGTCGATATTACCAGAATGGACGC 187 Query 729 ATATAAACACAAGTCACCACGTTATTGATTCTATAGATGGCTATGACCCACCACAAGATG 788 |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 188 ATATAAACACAACCCACCACGTTATTGATTCTATAGGTGGCTATGACCCACCACAAGATG 247 Query 789 TACTTAGGACCGGCGCCATGCCCGCTAATGCCAGTGATCCAATGACCATTACCTGGAATT 848 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 248 TACTTAGGACCGGCGCCATGCCGGCTAATGCCAGTGATCCAATGACCATTACCTGGAGTT 307 Query 849 TGAAGACGGCTACTGACCAGGTTTACGGTTATATTTACATCGCC-GAGATCATGGAAGTC 907 || |||||||||||||||| ||||| ||||||||||||| || | ||||||| | ||||| Sbjct 308 TGGAGACGGCTACTGACCAAGTTTATGGTTATATTTACA-CGGCTGAGATCACGAAAGTC 366 Query 908 CAGGCCAATGAAACTAGAGAATTCGAAGTTGTGGTAAATAATAAAGTTCATTTCGATCCT 967 | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 367 CCGGCCAATGAAACTAGAGAATTCGAAGTTGTGGCAAATGATAAAGTTCATTTCGATCCG 426 Query 968 TTCCGTCCTACCA-GATTTGAAGCACA-AGTTATGTTCAACAATGTACCACTGACATGCG 1025 ||| ||||||||| | ||||||||||| | || |||||||| |||||||||||||||||| Sbjct 427 TTCAGTCCTACCAAG-TTTGAAGCACAGATTT-TGTTCAACGATGTACCACTGACATGCG 484 Query 1026 AGGGAGGATTTTGTCGTCTGCAACTTATAAAAACTCCGAAATCGAC 1071 ||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 485 AGGGAGGATTTTGTCGTGTGCAACTTATAAAAACTCCGAGATCGAC 530 Score = 440 bits (238), Expect = 2e-122 Identities = 248/253 (98%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 1294 AGATTTGTCTTCAAGTGGATTAAATGGAGTTATACCACCTAGCATACAAAATCTAACTCA 1353 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 531 AGATTTGTCTTCAAGTGGATTAAATGGAGTTATATCACCTAGCATACAAAATCTAACTCA 590 Query 1354 ACTTCAAGAACTGGACCTGTCCCAAAACAACTTGACTGGTAAAGTGCCTGAATTTCTAGC 1413 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 591 ACTTCAAGAACTGGACTTGTCCCAAAACAACTTGACTGGTGAAGTGCCTGAATTTCTAGC 650 Query 1414 CAAGATGAAATATTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC 1473 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 CAAGATGAAGTCTTTGTTGGTCATAAACTTAAGTGGAAACAAACTTAGCGGTTTGGTTCC 710 Query 1474 TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT 1533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TCAAGCCCTTCTTGATAGAAAAAAGGAAGGATTAAAGCTATTGGTTGACGAAAATATGAT 770 Query 1534 TTGTGTGTCTTGC 1546 ||||||||||||| Sbjct 771 TTGTGTGTCTTGC 783 Score = 152 bits (82), Expect = 1e-35 Identities = 96/103 (93%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 29 TGAACGAAGAAATCATCAAAAATGGACACTTGCACCAGGCTTCTGTTTGCTGCGTGTGCC 88 ||||| ||||||||||||||||||| ||| ||||| |||||||||||||||||||||| Sbjct 1 TGAACCCAGAAATCATCAAAAATGGAGACTCACACCAAGCTTCTGTTTGCTGCGTGTGCC 60 Query 89 ACTTTATCCATCTTACATCTTGTTCAATCTCAGAATCAACAAG 131 |||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 ACTTTATCCATCATACATCTTGTTCAATCTCAGAATCAACAAG 103 Score = 115 bits (62), Expect = 2e-24 Identities = 68/71 (96%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 1595 GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTTTAAGAAGGAGAAAGCCATCTGCT 1654 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 782 GCCATTATCATACTTGTGTTAGTTCTCATATTTGTTATAAGAAAGAGAAAGCCATCTGCT 841 Query 1655 GGGAAAGTTAC 1665 ||||||| ||| Sbjct 842 GGGAAAGGTAC 852 > Ahg931165 jgi|Araly1|931165|scaffold_303622.1 Length=351 Score = 183 bits (99), Expect = 4e-45 Identities = 163/193 (84%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 485 GAGGAGATCATTCACATCACAAGGTCTAACATCTTGGACATATGTCTCGTCAAGACAGGG 544 ||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 108 GAGGAGATCATTCACGTCACAAGGTCTAACATCTTGGACATATGTCTCGTAAAAACAGGG 167 Query 545 ACGAGTACACCAATGATATCATCCATAGAGTTGA-GACCCT-TGCTATATGATACTTATA 602 ||||||||||||||||||||| ||||||| | | |||| | ||| |||||||||||||| Sbjct 168 ACGAGTACACCAATGATATCAGCCATAGAACT-ACGACC-TATGCGATATGATACTTATA 225 Query 603 TTGCTCAAACCGGTTCCTTGAGGAATTATA-ACCGGTTCTATTTCACCGATTCAAACAA- 660 ||||| |||||| ||||| | || |||| | || ||| ||| || ||||| |||| Sbjct 226 CTGCTCGAACCGGATCCTTAAAGA-TTATTGAGCGCACCTACTTCGCCAATTCAGACAAG 284 Query 661 CTATATACGTTAT 673 ||| ||||| ||| Sbjct 285 CTA-ATACGGTAT 296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101853315130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5