BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07570.3
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470784 jgi|Araly1|470784|fgenesh2_kg.1__738__AT1G07570.2 1991 0.0
Ahg481810 jgi|Araly1|481810|fgenesh2_kg.4__870__AT2G28930.1 1002 0.0
> Ahg470784 jgi|Araly1|470784|fgenesh2_kg.1__738__AT1G07570.2
Length=1547
Score = 1991 bits (1078), Expect = 0.0
Identities = 1175/1222 (96%), Gaps = 5/1222 (0%)
Strand=Plus/Plus
Query 233 AGGAGCGAGTACGAAGTATGACGCCAAAGATA-TAGGAAGTCTTGGGAGCAAGGCTTCGT 291
||| |||||| ||||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 235 AGGGGCGAGTCCGAAGTATGACGCCAAAGATACT-GCAAGTCTTGGGAGCAAGGGTTCGT 293
Query 292 CTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATCTTACAGTCTCCAAATCTCA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 294 CTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATCTTACAGTCTCCAAACCTCA 353
Query 352 AGAGTTTTAGCTTTGCTGAGCTTAAATCAGCAACCAGGAATTTTAGACCAGACAGTGTGC 411
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 354 AGAGTTTTAGCTTTGCTGACCTTAAATCCGCAACCAGGAATTTCAGACCAGACAGTGTGC 413
Query 412 TTGGTGAAGGTGGATTCGGTTGTGTTTTCAAAGGATGGATTGATGAGAAGTCTCTCACTG 471
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 414 TTGGTGAAGGTGGATTCGGTTGTGTGTTCAAAGGATGGATTGATGAGAAGTCTCTCACTG 473
Query 472 CCTCAAGACCAGGCACGGGTTTGGTTATTGCCGTCAAAAAGCTTAACCAAGATGGTTGGC 531
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CCTCAAGACCAGGCACTGGTTTGGTTATTGCCGTCAAAAAGCTTAACCAAGATGGTTGGC 533
Query 532 AAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTTGGTCAGTTTTCTCACCGTCACC 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 534 AAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTTGGTCAGTTTTCTCATGGTCACC 593
Query 592 TTGTGAAGCTGATTGGTTATTGCCTAGAGGATGAGCACCGTCTTCTTGTTTACGAGTTCA 651
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TTGTGAAGCTGATCGGTTATTGCCTAGAGGATGAGCACCGTCTTCTTGTTTACGAGTTCA 653
Query 652 TGCCTCGGGGTAGCTTGGAGAATCATCTTTTCAGGAGAGGTTTGTACTTCCAACCGTTAT 711
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 654 TGCCTCGGGGTAGCTTGGAGAATCATCTTTTCAGGAGGGGTTTGTACTTCCAACCGTTAT 713
Query 712 CTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGCTGCAAAGGGACTTGCTTTTCTTCACA 771
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 714 CTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGCTGCAAAGGGCCTTGCTTTTCTTCACA 773
Query 772 GTTCCGAGACAAGAGTGATATACCGAGATTTCAAGACTTCTAATATCCTTCTTGACTCGG 831
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GTTCCGAGACTAGAGTGATATACCGAGATTTCAAGACTTCTAATATCCTTCTTGACTCGG 833
Query 832 AGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCTAAGGATGGGCCAATAGGTGATAAAA 891
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 834 AGTACAACGCAAAGCTTTCTGATTTTGGGTTGGCCAAGGATGGGCCAATAGGTGATAAAA 893
Query 892 GTCATGTCTCTACACGAGTCATGGGTACACACGGATATGCAGCTCCTGAATACCTTGCAA 951
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 894 GTCATGTCTCTACACGGGTCATGGGTACGCACGGATATGCAGCTCCCGAATACCTTGCAA 953
Query 952 CCGGTCATCTAACAACAAAGAGTGATGTCTATAGCTTCGGGGTTGTCCTTCTGGAGCTGT 1011
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 954 CCGGTCATCTAACAACAAAGAGTGATGTCTATAGCTTTGGGGTTGTCCTTCTGGAGCTGT 1013
Query 1012 TGTCTGGTCGTCGAGCAGTGGACAAGAACCGCCCATCTGGAGAGAGGAACCTTGTGGAGT 1071
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1014 TGTCTGGTCGTCGAGCCGTGGACAAGAACCGTCCATCCGGAGAGAGGAACCTTGTGGAGT 1073
Query 1072 GGGCTAAACCATACCTCGTAAACAAAAGAAAGATATTCCGAGTCATTGATAATCGTCTTC 1131
|||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 1074 GGGCTAAACCATACCTCGTAAACAAAAGGAAGATATTCAGAGTCATCGATAATCGTCTTC 1133
Query 1132 AGGACCAGTACTCTATGGAAGAAGCATGTAAAGTGGCTACTCTGTCTCTGAGATGTCTCA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AGGACCAGTACTCTATGGAAGAAGCATGTAAAGTGGCTACTCTGTCTCTGAGATGTCTCA 1193
Query 1192 CCACAGAGATTAAGCTGAGACCAAACATGAGCGAGGTTGTTTCGCACCTCGAACACATTC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CCACAGAGATTAAGCTGAGACCAAACATGAGCGAGGTTGTTTCGCACCTCGAACACATTC 1253
Query 1252 AGTCTTTAAATGCTGCTATAGGAGGAAATATGGATAAAACAGATAGAAGAATGCGTAGGA 1311
|||||||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||||||
Sbjct 1254 AGTCTTTAAATGCTGCAATAGGGGGAAATATGGATAGAACAGAGAGAAGGATGCGTAGGA 1313
Query 1312 GAAGTGACAGTGTTGTCAGCAAAAAAGTGAATGCAGGTTTTGCTCGACAGACTGCTGTTG 1371
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1314 GAAGTGACAGTGTTGTCAGCAAAAAAGCAAATGCAGGTTTTGCTCGACAGACTGCTGTGG 1373
Query 1372 GCAGTACAGTTGTTGCTTATCCTCGCCCATCAGCCTCGCCACTGTATGTTTGAA-TAGGG 1430
||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| || |
Sbjct 1374 GCAGTACAGTTGTTGCTTATCCTCGCCCATCGGCCTCACCACTATATGTCTGAAGTAAG- 1432
Query 1431 T-TAAACACGTCCTGGGTCTGT 1451
| ||||||||||| | ||||||
Sbjct 1433 TATAAACACGTCCCGTGTCTGT 1454
Score = 187 bits (101), Expect = 2e-46
Identities = 115/121 (95%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 110 AGAAAGAGAAACAAAGAAAGGCGGGACCGATCCGCCATTAATGCTACCACCCAACTACAA 169
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAAGAGAAACAGAGAAAGGCGGGACCGATCCGCCATTAATGCTACCACCCAACTACAA 60
Query 170 GGCTTTTCT-CACACACTCTCTTCTCTCAATCTCTTGGCTCAGAACAAAGAAGATaaaaa 228
|||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||
Sbjct 61 CGCTTTTCTTCACACACTCTCTTCTCT-A-TCTCTTGGCTCAGAACAAAGAAAATAAAAA 118
Query 229 a 229
|
Sbjct 119 A 119
> Ahg481810 jgi|Araly1|481810|fgenesh2_kg.4__870__AT2G28930.1
Length=1564
Score = 1002 bits (542), Expect = 0.0
Identities = 967/1169 (83%), Gaps = 42/1169 (4%)
Strand=Plus/Plus
Query 275 TGGG-AGC-AAGGCTTCGTCTGTGTCTGTAAGACCAAGCCCTCGAACTGAGGGTGAGATC 332
|||| ||| || || || |||||||| | ||| ||| ||| ||||||| || ||||||
Sbjct 304 TGGGAAGCAAAAGC-TCTTCTGTGTCAATCAGAACAAACCCAAGAACTGAAGGAGAGATC 362
Query 333 TTACAGTCTCCAAATCTCAAGAGTTTTAGC-TTTGCTGAGCTTAAATCAGCAACCAGGAA 391
|| || ||||| || ||||| ||||| | | ||||||||||||||| ||||||| |||||
Sbjct 363 TTGCAATCTCCTAACCTCAAAAGTTTCA-CTTTTGCTGAGCTTAAAGCAGCAACTAGGAA 421
Query 392 TTTTAGACCAGACAGTGTGCTTGGTGAAGGTGGATTCGGTTGTGTTTTCAAAGGATGGAT 451
||| |||||||| ||||| ||||||||||||||||| |||| |||||||||||| |||||
Sbjct 422 TTTCAGACCAGATAGTGTTCTTGGTGAAGGTGGATTTGGTTCTGTTTTCAAAGGTTGGAT 481
Query 452 TGATGAGA-AGTCTCTCACTGCCTC-AAGACCAGGCACGGGTTTGGTTATTGCCGTCAAA 509
|||||| | || |||| ||||| || || ||| || || ||| |||||||||| || |||
Sbjct 482 TGATGA-ACAGACTCTTACTGCTTCTAA-ACCGGGAACCGGTGTGGTTATTGCTGTTAAA 539
Query 510 AAGCTTAACCAAGATGGTTGGCAAGGTCACCAGGAGTGGCTGGCTGAAGTGAATTACCTT 569
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||
Sbjct 540 AAGCTTAACCAAGATGGTTGGCAAGGTCACCAAGAATGGCTGGCGGAAGTGAATTAC-TT 598
Query 570 GGT-CAGTTTTCTCA-CCGTCACCTTGTGAAGCTGATTGGTTATTGCCTAGAGGATGAGC 627
|| |||||||| || || | | |||||||| ||||||||||||||| ||||||||||||
Sbjct 599 GGGGCAGTTTTCACATCC-TAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGC 657
Query 628 ACCGTCTTCTTGTTTACGAGTTCATGCCTCGGGGTAGCTTGGAGAATCATCTT-TTCAGG 686
| ||||||||||| || |||||||||||||| || ||||| ||||||||| || |||||
Sbjct 658 ATCGTCTTCTTGTGTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCAT-TTGTTCAGA 716
Query 687 AGAGGTT-TGTACTTCCAACCGTTATCTTGGAAACTTCGGTTGAAAGTTGCTCTTGGTGC 745
||||||| | || || |||||||||||||||| || |||||||||||||||||||||||
Sbjct 717 AGAGGTTCT-TATTTTCAACCGTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGTGC 775
Query 746 TGC-AAAGGGACTTGCTTTTCTTCACAGTTCCGAGACAAGAGTGATATACCGAGATTTCA 804
||| ||||| |||||||||||||| | | ||||| || || |||||||| |||||||
Sbjct 776 TGCCAAAGGT-CTTGCTTTTCTTCATAACGCTGAGACTAGTGTCATATACCGTGATTTCA 834
Query 805 AGACTTCTAATATCCTTCTTGACTCGGAGTACAACGCAAAGCTTTCTGATTTTGGGTTGG 864
| || || ||||| |||||||| ||||||||||| || | |||||||||||| ||| |||
Sbjct 835 AAACGTCGAATATACTTCTTGATTCGGAGTACAATGCTACGCTTTCTGATTTCGGGCTGG 894
Query 865 CTAAGGATGGGCCAATAGGTGATAAAAGTCATGTCTCTACACG-AGTCATGGGTACACAC 923
|||| ||||| |||| || |||||||| |||||||||||||| | |||||||||| ||
Sbjct 895 CTAAAGATGGTCCAACGGGCGATAAAAGCCATGTCTCTACACGGA-TCATGGGTACTTAC 953
Query 924 GGATATGCAGCTCCTGAATACCTTGCAACCGGTCATCTAACAAC-AAAGAGTGATGTCTA 982
|||||||||||||||||||| |||||||| |||||| ||||||| ||| |||||||||||
Sbjct 954 GGATATGCAGCTCCTGAATATCTTGCAACTGGTCATTTAACAACCAAA-AGTGATGTCTA 1012
Query 983 TAGCTTCGGGGTTGTCCTTCTGGAGCTGTTGTCTGGTCGTCGAGCAGTGGACAAGAACCG 1042
||||| ||| || || ||| ||||| |||||||||| || |||| ||||||||||||||
Sbjct 1013 TAGCTACGGTGTCGTGCTTTTGGAGGTGTTGTCTGGACGGAGAGCTGTGGACAAGAACCG 1072
Query 1043 CCCATCTGGAGAG-AGGAACCTTGTGGAGTGGGCTAA-ACCAT-ACCTCGTAAACAAAAG 1099
||| | |||||| | || || ||||| ||||| || ||| | || | | |||||||||
Sbjct 1073 TCCACCAGGAGAGCAA-AAGCTGGTGGAATGGGC-AAGACCGTTACTT-GCAAACAAAAG 1129
Query 1100 AAAGATATTCCGAGTCATTGATAATCGTCTTCAGGACCAGTACTCTATGGAAGAAGCATG 1159
||| |||||||||| || ||||| ||||| || || || ||||| ||||||||||| ||
Sbjct 1130 GAAGTTATTCCGAGTTATCGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTG 1189
Query 1160 TAAAGTGGCTACTCTGTCTCTGAGATGTCTCACCA--CAGAGATTAAGCTGAGACCAAAC 1217
|||||| ||||||||| | |||||||| ||||| | | ||||| ||||||||||| |||
Sbjct 1190 TAAAGTAGCTACTCTGGCGCTGAGATGCCTCAC-ATTC-GAGATAAAGCTGAGACCGAAC 1247
Query 1218 ATGAGCGAGGTTGTTTCGCACCTCGAACACATTCAGTCTTTAAATGCTGCTAT-AGGAGG 1276
|||| ||||||||||| |||||||||||||| || |||| |||| || | |||| |
Sbjct 1248 ATGAATGAGGTTGTTTCTCACCTCGAACACATCCAAACTTTGAATGAAGC-AGGAGGAAG 1306
Query 1277 AAATATGGATAAAA-CAGATAGAAGAATGCGTAGGAGAAGTGACAGTGTTG-T--CAGCA 1332
|||||| ||||| | || |||||||||||||||||||| || ||||||| | || |
Sbjct 1307 AAATATCGATAAGGTC-GAGAGAAGAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACC 1365
Query 1333 AAAAAGTGAATGCAGGTTTTGCTCGACAGACTGCTGTTGGCAGT-ACAGTTGTTGCTTAT 1391
||||| ||||||||||||||||| || || ||||| ||| || | || | |||||||
Sbjct 1366 AAAAACCAAATGCAGGTTTTGCTCGGCAAACAGCTGTAGGC-GTCATAGCTACTGCTTAT 1424
Query 1392 CCTCGCCCATCAGCCTCGCCACTGTATGT 1420
|| ||||| || | ||||| |||| |||
Sbjct 1425 CCACGCCCGTCTGATTCGCCTCTGTTTGT 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54583321085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5