BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07590.1
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470785 jgi|Araly1|470785|fgenesh2_kg.1__739__AT1G07590.1 3277 0.0
> Ahg470785 jgi|Araly1|470785|fgenesh2_kg.1__739__AT1G07590.1
Length=2297
Score = 3277 bits (1774), Expect = 0.0
Identities = 2159/2336 (92%), Gaps = 62/2336 (3%)
Strand=Plus/Plus
Query 1 GAAATCACAAAAGCATCATAAGAAGAAGAAGAAACTACAATAGTTAATCAATCAAAGAGA 60
|||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||
Sbjct 1 GAAATCACAAAAGCATCAGAAGAAGAAGAAGAAAGTACAA-A---AATCAATCAAAGAGA 56
Query 61 AGTAAGAGAAATGGCAGATTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AGTAAGAGAAATGGCAGGTTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTC 116
Query 121 TTGCAGTTGCGAGAAGAACTACAACAAGGAGTGCGACAACTGTAGCTGTGGATCAAACTG 180
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 117 TTGCAGTTGCGAGAAGAACTACAACCAGGAGTGCGACGACTGTAGCTGTGGATCAAACTG 176
Query 181 CAGCTGTGGGTCAAACTGTAACTGTTGATGAAATTATTATGGTCTAAAATCATATATATG 240
|||||||||||||||||||||||||||||| || |||| || || |||||||
Sbjct 177 CAGCTGTGGGTCAAACTGTAACTGTTGATG-AA--ATTA---TC----AT--TATATATC 224
Query 241 GCAGAAAAATTGGGGAAAATA-TGTGTTTTATGCTAAGAGATG-TGTGTGTGTTGTTGGA 298
|||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||
Sbjct 225 CCAGAAAAATTGGGGAAAA-ACTGTGTTTTATGCTAAGAGATGTTGTGTGTG-TGTTGGA 282
Query 299 ATAAAGACGTGACCGTTGTGTTGCGT--ATCAACTCTCTTAAGCTTTGAC-TTTTCCCAG 355
||||||| |||||||||||||||||| || ||||||||||||||||||| |||| ||||
Sbjct 283 ATAAAGATGTGACCGTTGTGTTGCGTAAAT-AACTCTCTTAAGCTTTGACTTTTTTCCAG 341
Query 356 CTTTGTATTTTCC--TATGT-ATGGTAATGGTGTGATTGTGTAATGTTTTCATATGT-AA 411
||||||||||||| ||||| |||| ||||||||||| |||||||||||||||| | ||
Sbjct 342 CTTTGTATTTTCCTATATGTGGTGGTGATGGTGTGATTATGTAATGTTTTCATAT-TCAA 400
Query 412 CGTaaaaaaaaTATTTATGTGACATTGACTTTTGTGACTACTAAGATTTGTATATGTCTC 471
||| ||||||||||||||||| ||||||||||||||||| |||||||||| | | |||
Sbjct 401 CGT-AAAAAAATATTTATGTG-TATTGACTTTTGTGACTATTAAGATTTGTCTGTCTCTG 458
Query 472 CTCCGTTTT-TTATTTAGGATTTAAGTTCAATCAGCTAAATTAATCATAAACAATTTAAG 530
|||| |||| ||||||||||| |||| |||||||||| |||||||||| ||||||||| |
Sbjct 459 CTCC-TTTTCTTATTTAGGATATAAGCTCAATCAGCT-AATTAATCATGAACAATTTAGG 516
Query 531 TAAATATTCATATGAGAAGAAGTCAACCA--TA-TT-CTTATCGGGCCTTATATGTTAAT 586
|||||||| || | | | |||| ||||| || || |||||||||||||| | | |
Sbjct 517 TAAATATT-AT-T-A-TATAAGTAAACCATGTACTTACTTATCGGGCCTTA-A-G----T 566
Query 587 GTTAAAAGGTTACGGGCCAGTAAGGTCCCAAAAAAGAAGAAGAGATGAGATCCATTATTG 646
||| |||| |||||||||||||||||||| ||||||||||||| |||||||| || ||||
Sbjct 567 GTTGAAAGTTTACGGGCCAGTAAGGTCCC-AAAAAGAAGAAGAAATGAGATCTATAATTG 625
Query 647 C-TCTCATGAGGCAACGAGAATATTTCGTTCAGGCAATTCGTCGAACAACTTGCGTGGC- 704
| | | ||||||| ||||||| ||||||| ||||||| |||||||||||||||||| |
Sbjct 626 CGT-TGGTGAGGCAGCGAGAATGTTTCGTTGAGGCAATACGTCGAACAACTTGCGTGCCA 684
Query 705 -C-TCACCTGCGTTGAATCAAACTAACTTCCAAGCTTCGAGCTTTCTCACTACCCTAATA 762
| || |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 685 TCTTCGCCTGCGGTGAATCAAACTAATTTCCAAGCTTCAAGCTTTCTCACTACCCTAATC 744
Query 763 TCTTCGAAGAAATCTCCGGAAGAG--A-CATGTATCGGATCGGAGGAAGAAGAAGAGGAG 819
|||||||||||||||||||||||| | ||||| |||| ||||| | ||||||||| |||
Sbjct 745 TCTTCGAAGAAATCTCCGGAAGAGACATCATGTCTCGGGTCGGATGTAGAAGAAGAAGAG 804
Query 820 CCCAACAAGTGTTTGTCTTTGAGAATCGAGAAGCTTCCGAAGGGCGTAACTGTTGGGTCT 879
|||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 805 CCCAACAAGTGTTTGTCTGTGAGAATCGAGAAGCTCCCAAAGGGCGTAACTGTTGGGTCT 864
Query 880 GCTTTACAGAGCTGGATGGGTGATGGGTTTCCAGTTCATGGTGGAGATGTTTATCACGCC 939
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GCGTTACAGAGCTGGATGGGTGATGGGTTTCCAGTTCATGGTGGAGATGTTTATCACGCT 924
Query 940 ATTAATCGATTGAGGAAACTCGGACGAAACAAACGTGCCCTTGAGTTGATGGAGTGGATA 999
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 925 ATTAATCGATTGAGGAAGCTCGGACGAAATAAACGTGCCCTTGAGTTGATGGAGTGGATA 984
Query 1000 ATCAGGGAAAGACCTTACCGTCTTGGTGAGCTAGAGTACTCTTACTTGCTCGAATTTACA 1059
|||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |||
Sbjct 985 ATCAGGGAAAGACCTTACCGTCCCGGTGAGCTAGAATACTCATACTTGCTGGAATTCACA 1044
Query 1060 GTCAAACTTCATGGCGTCTCGCAAGGAGAAAAGCTATTTACCCGTGTCCCTCAAGAGTTT 1119
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1045 GTCAAACTTCATGGCGTCTCGCAAGGCGAAAAGCTTTTTACCCGTGTCCCTCAAGAGTTT 1104
Query 1120 CAGAACGAGCTTCTTTACAACAACCTTGTGATTGCTTGTTTAGACCAAGGTGTCATAAGG 1179
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CAGAACGAGCTTCTTTACAATAACCTTGTGATTGCTTGTTTAGACCAAGGTGTCATAAGG 1164
Query 1180 CTTGCGCTAGAGTATATGAAGAAGATGAGAGAACTCGGTTACCGTACTTCCCATTTGGTC 1239
||||| |||| |||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 1165 CTTGCACTAGCGTATATGAAGAAGATGAGGGAACTTGGTTATCGTACATCCCATTTGGTC 1224
Query 1240 TACAACCGTCTTATAATTCGCAACTCTGCTCCCGGACGAAGAAAGCTAATAGCAAAAGAC 1299
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1225 TACAACCGTCTTATAATTCGCAACTCAGCTCCCGGACGAAGAAAGCTAATCGCGAAAGAC 1284
Query 1300 CTTGCGCTCATGAAAGCTGACAAGGCGACTCCTCATGTCTCAACGTATCATATCTTGATG 1359
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1285 CTTGCGCTCATGAAAGCTGACAAGGCCACTCCTCATGTCTCAACATATCATATCTTGATG 1344
Query 1360 AAGCTTGAGGCTAATGAACATAACATCGATGGGGTGCTGAAGGCTTTTGATGGTATGAAG 1419
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1345 AAGCTTGAGGCTAATGAACATAACATCGACGGGGTGCTAAATGCTTTTGATGGTATGAAG 1404
Query 1420 AAAGCGGGAGTTGAGCCAAATGAGGTGTCTTACTGTATATTGGCTATGGCACATGCTGTT 1479
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1405 AAAGCTGGAGTTGAGCCGAATGAGGTTTCTTACTGTATATTGGCTATGGCACATGCTGTT 1464
Query 1480 GCGAGATTGTATACAGTTGCAGAAGCCTATACCGAGGAAATAGAAAAATCTATCACAGGG 1539
||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1465 GCGAGGTTGTATACAGTTGCGGAAGCCTATACCGAGGAAATAGAAAAATCTGTCAC-GGG 1523
Query 1540 G-ATAATTGGTCGACCTTGGATATATTGATGATTCTATATGGGCGTTTAGGGAAAGAAAA 1598
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 GAATAATTGGTCGACCTTAGATATATTGATGATTCTATATGGGCGTTTAGGGAAAGAAAA 1583
Query 1599 AGAGCTAGCGAGAACGTGGAATGTCATAAGAGGGTTTCATCATGTTAGATCCAAGAGTTA 1658
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1584 GGAGCTAGTAAGAACGTGGAATGTCATCAGAGGGTTTCATCATGTTAGATCCAAGAGTTA 1643
Query 1659 CTTACTGGCAACCGAAGCGTTTGCTCGAGTAGGGAACCTTGATAGAGCGGAAGAGCTCTG 1718
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1644 CTTACTGGCAACTGAAGCTTTTGCGCGAGTAGGGAACCTTGATAGAGCGGAAGAGCTCTG 1703
Query 1719 GTTAGAGATGAAAAACGTAAAAGGACTTAAAGAAACTGAGCAATTCAACTCTCTGCTCTC 1778
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1704 GTTAGAGATGAAAAACGTAAGAGGACTCAAAGAAACTGAGCAATTCAACTCTCTGCTCTC 1763
Query 1779 GGTATACTGCAAGGACGGTTTGATAGAGAAGGCAATTGGTGTATTCCGCGAGATGACAGG 1838
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1764 GGTATACTGCAAAGACGGTTTGATAGAGAAGGCAATAGGTGTATTCCGCGAGATGATGGG 1823
Query 1839 AAACGGGTTTAAGCCTAATTCCATAACGTATAGACATCTTGCTCTTGGATGTGCTAAAGC 1898
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1824 AGACGGGTTTAAGCCTAATTCCATAACGTATAGACATCTTGCTCTAGGATGTGCTAAAGC 1883
Query 1899 CAAACTGATGAAGGAAGCTCTCAAAAACATTGAGATGGGTTTGAATCTAAAGACGAGCAA 1958
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1884 CAAACTGATGAAGGAAGCTCTCAAAAACATTGAAATGGGTTCGAATCTAAAGACGAGCAA 1943
Query 1959 AAGCATAGGAAGCTCAACGCCGTGGCTGGAGACGACTCTATCGATCATAGAGTGTTTTGC 2018
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1944 TAGCATAAGAAGCTCAACGCCGTGGCTGGAGACGACTCTATCGATCATCGAGTGTTTTGC 2003
Query 2019 AGAGAAAGGTGATGTAGAGAACTCAGAGAAACTGTTTGAAGAGGTGAAGAATGCAAAGTA 2078
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 AGAGAAAGGTGATGTTGAGAACTCAGAGAAACTGTTTGAAGAGGTGAAGAATGCAAAGTA 2063
Query 2079 TAATAGGTATGCGTTTGTGTACAACGCTCTGTTCAAAGCTTATGTGAAGGCTAAAGTGTA 2138
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 TAATAGGTATCCGTTTGTGTACAACGCTCTGTTCAAAGCTTATGTGAAGGCTAAAGTGTA 2123
Query 2139 TGACCCTAATCTGTTCAAGAGGATGGTTCTAGGTGGAGCTAGGCCTGATGCTGAGTCATA 2198
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2124 TGACCCTAATCTGTTCAAGAGGATGGTTCTAGGCGGAGCTAGGCCTGATGCTGAGTCATA 2183
Query 2199 CAGTTTGTTGAAACTTGTCGAACAATATAAGCCCTGACACAATCAAGTCTGCTCCAAttt 2258
|||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |||
Sbjct 2184 CAGTTTGTTGAAACTTGTTGAACAATATAACCCCTGACTCGATCAAGTCTGCTCCAGTTT 2243
Query 2259 ttttGATT-GATTGGATAGTTAGTGACTTGTGGGTTTAAGAAGTTGTTCGTAAAAG 2313
|||| ||| |||||||| | ||||||||||||||||||||||| |||| |||||||
Sbjct 2244 TTTT-ATTTGATTGGAT-GATAGTGACTTGTGGGTTTAAGAAGATGTTTGTAAAAG 2297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88940722075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5