BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07620.1
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311814 jgi|Araly1|311814|fgenesh1_pm.C_scaffold_1000594 2108 0.0
> Ahg311814 jgi|Araly1|311814|fgenesh1_pm.C_scaffold_1000594
Length=3033
Score = 2108 bits (1141), Expect = 0.0
Identities = 1443/1584 (91%), Gaps = 39/1584 (2%)
Strand=Plus/Plus
Query 235 AAGCATTTGAAAAACGAGAGTTCAAGTCCAAACCATGGCAAATACAATCACAAACT-AGG 293
||||||||||||||||| | | |||||||||| |||||||||| ||||||||| | |||
Sbjct 7 AAGCATTTGAAAAACGATAATACAAGTCCAAAAGATGGCAAATATAATCACAAA-TCAGG 65
Query 294 ATGGTTAGCTGGAATGCTTCATGTGCTTGACTTCCACCATTGGAGAACTAAGAACCGACC 353
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 66 ATGGTTAGCTGGAATGCTTCATGTGCTTGACTTTCACCATTGGAGAACTAAGAACCGACC 125
Query 354 AATCTGTTGGAAGACCCCAAGAACCCATTCCTTGATGCGTGAAACTGAGGAACAAGAACC 413
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 AATTTGTTGGAAGACCCCAAGAACCCATTCCTTGATGCGTGAAACTGAGGAACAAGAACC 185
Query 414 GTTTCTTGATTCTAAG-ATTAATGATTCAAAGATGCTTAGTGTTGTTGCAGATAATAAGC 472
|||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||
Sbjct 186 GTTTCTTGATTCTAAGGAAGGA-GATTCAAAGATGCTTAATGTTGCTGCAGATAATAAGC 244
Query 473 CAACGAGACCAGA-AACAAAACTGAAGAAGACGATGACAACAAAGCAAGTAACCGAGTAC 531
|||| |||| || |||||||| |||||||| |||| | || ||||||||||| ||||||
Sbjct 245 CAACAAGAC-AGGGAACAAAACCGAAGAAGATGATGGCTACGAAGCAAGTAACTGAGTAC 303
Query 532 GTGGATTTTCTTGAAATCTTGAGGAAGGAAGATGTTTTTGTCAAGATAATGAAAGATCAA 591
||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
Sbjct 304 GTGGATTTTCTTGAAATATTGAGAAAGGAAGATGTTTTTGTCAAGATACTGAAAGATCGA 363
Query 592 GTCCAGATCAAGTCTAATCCAAGGGTTTTACCCAAGTCAGGCTCGTTTCCTATCTCAGGA 651
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 364 GTCCAGATCAAGTCTAATCCACGAGTTTTGCCCAAGTCAGGCTCGTTTCCTATCTCAGGC 423
Query 652 TCTTCACGTCCTGCTAGGATTC-AACACAAGCAGAAGGAGAATTGGTATGCCCCAAAGCA 710
||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 424 TCTTCACGTCCCGCTAGGAT-CGAACACAAGCAGAAGGAGAATTGGTATGCTCCAAAGCA 482
Query 711 GAACGGTGCCGTTTTGACTTTGAAGGTTCCAAGAGACACTTCTCAAGAGTGCAAACCAAT 770
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||
Sbjct 483 AAACGGTGCCGTTTTAACTTTGAATGTTCCAAGAGACACTTCTCAAGAGCACAAACCTAT 542
Query 771 CTCTCCTTCTCATGGCTCAGCTGATGATGATCATGGATTCAATCACGCTATCATAAACGG 830
||||||||||||||||||||||||||||||||||||||| || |||||| | |||| |||
Sbjct 543 CTCTCCTTCTCATGGCTCAGCTGATGATGATCATGGATTTAACCACGCTGTTATAACCGG 602
Query 831 ATTTAGAGAAATCAAGAAGTTGCTCAAAAATACACTCAAAGACCGAAATCGCACAaagaa 890
|||||||||||||||||||||| |||| || |||| ||||||||||||| |||||||||
Sbjct 603 ATTTAGAGAAATCAAGAAGTTGATCAAGAACGCACTTAAAGACCGAAATCACACAAAGAA 662
Query 891 gaagaagaagaagaagGTTTTGGATGTTGCGAAAGATGATTATGTGGGGAGATATTCTCA 950
|||||||||| | ||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 663 GAAGAAGAAG--G----TTTCGGATGTTCCAAAAGATGATTATGTGGGGAGATATTCTCA 716
Query 951 ACTCTTGAAGCAGA-TTTCTAGAAGAGAAGGTGGTGA-CTTGCGTTCGAAGAGCTTAAAA 1008
||||||| |||||| ||| ||||||||||||||| | || |||||| ||||||||||||
Sbjct 717 ACTCTTGGAGCAGAGTTT-TAGAAGAGAAGGTGGCAAACT-GCGTTCAAAGAGCTTAAAA 774
Query 1009 CTTTCATATGAAGAGAAAAAGAGCGATTCGAGAGATAATAAACCGCAATTCTTCAGACGG 1068
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 775 CTTTCATATGAAGAGAAAAAGAGCGATTCAAGAGATAATAAACCGCAATTCTTCAGACGG 834
Query 1069 ATTTCGTCCTTGTCCAGCCTTGAAGTTCTTGGTTCATTTCTGACCGACCTCCCTCGAGAC 1128
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 835 ATTTCGTCCTTGTCCAGCCTTGAAGTTCTTGGTTCATTTCTGACCGACCTTCCAAGAGAC 894
Query 1129 AGTTCTACTTCCAATCAGGAAACTAGGATATCTGAAGACCAAGATACTAACTTTGGAGCC 1188
||||||||||||||||||||| ||| || | ||| ||||||||||||||||||||| ||
Sbjct 895 AGTTCTACTTCCAATCAGGAACCTAAGAAACCTGTGGACCAAGATACTAACTTTGGATCC 954
Query 1189 AAAAAATCTGTATTGTCATCCGAATCTCCGGTAAGAGCAGAGAAGGAAGAGAAGTATGAG 1248
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 955 AAGAAATCTGTATTGTTATCCGAATCTCTGGTAAGAGCAGAGAAGGAAGAGAAATATGAG 1014
Query 1249 GTGCAAGAGGAGAGAAGCCAAGAAAATCACCTAGACAGCTCAAACCAAAGAAT---CCTG 1305
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1015 GTGCAAGAGGAGAGAAGCCAAGAAATTCACCTAGACAGCTCAAACCAAAGAATAATCCTG 1074
Query 1306 CAACAAGAACCAGATTCAGTTCCTAGTACCAATAAAACCGCAGAAAAGACAGAGACTTTA 1365
|||||||| | ||||||||||| ||||||| || | || |||||||||||||||||||||
Sbjct 1075 CAACAAGATCAAGATTCAGTTCATAGTACCGATGATACTGCAGAAAAGACAGAGACTTTA 1134
Query 1366 CTACCACAAGGTTTAGGTCTAAGTTCTTTAGAAATTTACAAACATGAAGAAGAAGATGAA 1425
|| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 1135 CTCCCACAAGGTTTAGGTCTAAGTTCTTCAGAGATTTACAACCATGAAGAAGAAGATGAA 1194
Query 1426 GATGCCTACTTCTGTTACGTAAAGAAGGTTTTAAAAGTTTCAGGCTTCCTCGAAAACAAA 1485
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1195 GATGCCTACTTCTGTTACGTAAAGAAGGTTCTAAAAGTTTCAGGCTTCCTCGAA------ 1248
Query 1486 GACAACGAAGAAAAGTGGTACTCAGAGGAACAACCACTGAATCCATCACTGCTTTACGAA 1545
|| || || ||| ||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 1249 GA-AA--AA------TGGCACTCAGAGGAACAGCCACTAAATCCATCACTGCTTCACGAG 1299
Query 1546 CTCGATATACAAGAAGAAGAAACAGTGAACGACAAAGAGCTTCTATTCGATTTGGTTAAC 1605
||||| ||||| ||||||| | |||||||||||||||||||| || ||||||||||||
Sbjct 1300 CTCGAGATACACGAAGAAGTA---GTGAACGACAAAGAGCTTCTCTTTGATTTGGTTAAC 1356
Query 1606 GAGGCAATCGTCGAGACTCAAAACCATTCACAAATATACTTCCCCAAAACATTTCCATAT 1665
|||||| |||||||||| || ||||| ||||||||||||||||||||||||| |||||||
Sbjct 1357 GAGGCAGTCGTCGAGACACACAACCAATCACAAATATACTTCCCCAAAACATATCCATAT 1416
Query 1666 GGCAAACGTTATCTTGATGAGGTATGGGGAAGAGTGGAGTGGAGCCTCTCTGGTTTAGGA 1725
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1417 GGAAAACGTTATCTTGATGAGGTATGGGGAAGAGTCGAGTGGAGCCTCTCTGGTTTAGGA 1476
Query 1726 GCTGAGAACAGAGATCGTTCATTGGATGATATTGTGGGAAGAGATCTTCTTACAAAGAGT 1785
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GCTGAGAATAGAGATCGTTCATTGGATGATATTGTGGGAAGAGATCTTCTTACAAAGAGT 1536
Query 1786 GATGGATGGATGAATCTCCAAGGT 1809
||||||||||||||||| ||||||
Sbjct 1537 GATGGATGGATGAATCTTCAAGGT 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208926615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5