BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07630.1
Length=2336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470787 jgi|Araly1|470787|fgenesh2_kg.1__741__AT1G07630.1 3565 0.0
Ahg481804 jgi|Araly1|481804|fgenesh2_kg.4__864__AT2G28890.1 1245 0.0
> Ahg470787 jgi|Araly1|470787|fgenesh2_kg.1__741__AT1G07630.1
Length=2305
Score = 3565 bits (1930), Expect = 0.0
Identities = 2211/2340 (94%), Gaps = 45/2340 (2%)
Strand=Plus/Plus
Query 6 TGAACAATCAATCTCAGCTTTGAGTTCTCCCAAATCCTCTATTGACTTTGCGAATCTAAG 65
|||||||||||||||||| |||| ||||||||||||||||||||||||| | | ||
Sbjct 2 TGAACAATCAATCTCAGC-TTGAATTCTCCCAAATCCTCTATTGACTTT--G-A---AA- 53
Query 66 AAAAAACTGAAATTAATAACGTTTTTGATGGGTAACGGAGTAACAAAACTGAGTATATGT 125
| || ||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 54 ATCCAA---AAA--AA-AA-----TTGATGGGTAACGGAGTCACAAAACTGAGTATATGT 102
Query 126 TTCACA---GGCGGTGGAGGAGAACGTCTCCGGCCAAAAGACATCTCCGTTCTTCTTCCG 182
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 103 TTCACAGGCGGCGGAGGAGGAGAACGTCTCCGGCAAAAAGACATCTCCGTTCTTCTTCCG 162
Query 183 GATCCTTTAGACGAAGGTTTAGGTCACTCCTTCTGCTACGTCCGACCAGACCCGACTCTA 242
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 163 GATCCTTTAGACGAAGGTTTAGGTCACTCCTTCTGCTATGTCCGACCCGACCCGACTCTA 222
Query 243 ATCAGTTCCTCAAAAGTCCATTCAGAGGAAGACACAACGACGACAACGTTCCGTACAATC 302
|||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 223 ATCACTTCCTCAAAAGTCCATTCAGAGGAAGATACAACGACGACGGCGTTCCGTACAATC 282
Query 303 TCCGGCGCTTCCGTTAGCGCCAACACAGCTACTCCTCTCTCAACTTCTCTCTACGATCCC 362
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 283 TCCGGCGCCTCCGTAAGCGCCAACACAGCAACTCCTCTCTCAACTTCTCTCTACGATCCC 342
Query 363 TACGGTCACATCGACCGCGCCGCCGCATTCGAAAGCACGACTTCATTTTCGTCAATCCCT 422
|||||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||||
Sbjct 343 TACGGTCACATCGATCGCGCCGCCGCATTCGAGAGCACGACGTCGTTTTCTTCAATCCCT 402
Query 423 CTTCAACCGATCCCCAAAAGCTCCGGTCCGATCGTTTTAGGCTCGGGTCCGATCGAAAGA 482
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 403 CTGCAGCCGATCCCCAAAAGCTCCGGTCCGATCGTTTTAGGTTCGGGTCCGATCGAAATA 462
Query 483 GGGTTCCTTTCAGGTCCGATCGAAAGAGGATTCATGTCGGGTCCTCTTGATCGGGTCGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GGGTTCCTTTCAGGTCCGATCGAAAGAGGATTCATGTCGGGTCCTCTTGATCGGGTCGGG 522
Query 543 TTATTCTCAGGTCCGCTTGATAAGCCAAACTCAGATCATCATCATCAGTTCCAACGTAGC 602
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 523 TTATTCTCAGGTCCGCTTGATAAGCCAAACTCCGATAATCATCATCAGTTCCAACGTAGC 582
Query 603 TTCTCTCATGGTTTAGCTTTACGGGTCGGGTCAAGAAAACGATCTTTGGTTCGGATCCTC 662
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 583 TTCTCTCATGGTTTAGCTTTACGGGTCGGGTCAAGAAAACGATCTTTAGTTCGGATCCTC 642
Query 663 CGTAGAGCAATCTCGAAAACGATGTCAAGAGGGCAAAACTCGATCGTTGCTCCGATCAAA 722
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CGTAGAGCAATCTCGAAGACGATGTCAAGAGGGCAAAACTCGATCGTTGCTCCGATCAAA 702
Query 723 TCCGTTAAAGATTCCGATAACTGGGGAATTAGGTCAGAAAAGAGCCGGAATTTGCACAAC 782
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TCAGTTAAAGATTCCGATAACTGGGGAATTAGGTCAGAAAAGAGCCGGAATTTGCACAAC 762
Query 783 GAGAATCTCACAGTGAATAGCTTGAACTTTAGCAGCGAAGTTAGCTTAGACGACGACGTT 842
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 763 GAGAATCTCACAGTGAATAGCTTGAACTTTAGCAGCGAAGTAAGCTTAGACGACGACGTT 822
Query 843 TCACTCGAAAACCAGAATCTTCAGTGGGCTCAGGGAAAAGCCGGTGAGGATCGAGTACAC 902
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TCACTCGAAAGCCAGAATCTTCAGTGGGCTCAGGGAAAAGCCGGTGAGGATCGAGTACAC 882
Query 903 GTGGTTGTATCGGAGGAGCACGGGTGGCTCTTCGTCGGAATATACGACGGATTCAACGGT 962
||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 883 GTGGTGGTTTCTGAGGAACACGGGTGGCTCTTCGTCGGAATATACGATGGATTCAACGGT 942
Query 963 CCAGATGCGCCGGATTATCTTCTCTCTCATCTCTATCCTGT-CGTTCATCGAGAGCTCAA 1021
|| |||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 943 CCTGATGCGCCGGATTATCTTCTCTCTCATCTCTATCCTGTGC-TTCATCGGGAGCTCAA 1001
Query 1022 AGGATTGTTATGGGACGATTCAAATGTCGAATCCAAATCTCAGGATTTAGAAAGGTCTAA 1081
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1002 AGGCTTGTTATGGGACGATTCAAATGTCGAATCCAAATCTCAGGATCTCGAAAGGTCTAA 1061
Query 1082 CGGAGACGAATCTTGTTCAAATCAGGAAAAGGATGAGACTTGTGAGCGATGGTGGAGATG 1141
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1062 CGAAGACGAATCTTGTTCAAATCAGGAAAAGAATGATACTTGTGAGCGATGGTGGAGATG 1121
Query 1142 TGAATGGGATCGTGAAAGTCAAGATCTTGACCGTCGATTAAAGGAACAGATTAGTCGGAG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1122 TGAATGGGATCGTGAAAGTCAAGATCTTGACCGTCGATTAAAGGAACAGATCAACCGGAG 1181
Query 1202 AAGTGGGTCGGATCGGTTAACGAATCATTCGGAAGTATTAGAGGCTCTGTCACAAGCTCT 1261
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1182 AAGTGGGTCGGATCGGTTAACGAATCATTCGGAAGTTTTAGAGGCTCTGTCACAAGCTCT 1241
Query 1262 GAGGAAAACAGAGGAAGCGTATTTAGATACTGCAGATAAGATGCTCGACGAAAATCCTGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GAGGAAAACAGAGGAAGCGTATTTAGATACTGCAGATAAGATGCTCGACGAAAATCCTGA 1301
Query 1322 ACTAGCTTTGATGGGTTCTTGTGTT-TTGGTCATGTTAATGAAAGGTGAAGATATTTATG 1380
||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1302 ACTAGCTTTAATGGGTTCTTGTGTGCTTG-TGATGTTAATGAAAGGTGAAGATATTTATG 1360
Query 1381 TGATGAATGTTGGTGATAGTAGAGCTGTGCTTGGTCAGAAATCAGAACCGGATTACTGGT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TGATGAATGTTGGTGATAGTAGAGCTGTGCTTGGTCAGAAATCAGAACCGGATTACTGGT 1420
Query 1441 TAGCTAAGATTAGACAGGATTTGGAACGGATTAACGAGGAAACGATGATGAATGATTTGG 1500
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1421 TAGCTAAGATAAGACAGGACTTGGAACGGATTAACGAAGAAACGATGATGAATGATTTGG 1480
Query 1501 AAGGTTGTGAAGGAGATCAATCATCTTTAGTCCCGAATTTATCGGCTTTTCAGCTCACTG 1560
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1481 AAGGTTGTGAAGGAGATCAATCCTCTTTAGGCCCGAATTTATCGGCTTTTCAGCTCACTG 1540
Query 1561 TTGATCACAGCACAAATATAGAAGAAGAAGTTGAGAGAATCAGAAACGAGCATCCCGATG 1620
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1541 TTGATCATAGCACAAATATAGAAGAAGAAGTTGAGAGGATCAGAAACGAGCATCCGGATG 1600
Query 1621 ATGTTACCGCGGTAACGAATGAACGGGTTAAAGGCTCCTT-AAAGGTCACAAGAGCGTTT 1679
||| |||||| || |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1601 ATGCTACCGCAGTGACGAATGAACGGGTTAAAGGCTCCTTGAAAG-TCACAAGAGCGTTT 1659
Query 1680 GGTGCTGGTTTCCTTAAGCAGCCTAAATGGAACAATGCACTTCTTGAGATGTTCCAAATT 1739
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1660 GGTGCTGGTTTCCTAAAGCAGCCTAAATGGAACAATGCGCTTCTTGAGATGTTCCAAATT 1719
Query 1740 GATTACGTTGGGAAGTCTCCATACATCAACTGCTTACCGTCTCTCTACCACCACAGATTA 1799
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1720 GATTACGTAGGGAAGTCTCCATACATCAACTGCTTACCGTCTCTGTACCACCACAGATTA 1779
Query 1800 GGGTCCAAGGACCGGTTTCTAATACTATCATCGGATGGTCTCTACCAATACTTCACAAAC 1859
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 GGGTCGAAGGACAGGTTTCTAATACTATCATCGGATGGTCTCTACCAATACTTCACAAAC 1839
Query 1860 GAAGAAGCTGTTTCAGAGGTTGAGCTCTTCATCACATTACAACCTGAAGGGGATCCAGCT 1919
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 GAAGAAGCGGTTTCAGAGGTTGAGCTCTTCATCACATTACAACCTGAAGGGGATCCAGCT 1899
Query 1920 CAACACCTTGTGCAAGAGCTTTTGTTTAGAGCTGCTAAGAAAGCTGGTATGGATTTCCAT 1979
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 CAACACGTTGTACAAGAGCTTTTGTTTAGAGCTGCTAAGAAAGCTGGTATGGATTTCCAT 1959
Query 1980 GAATTGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTA 2039
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1960 GAATTGCTAGAGATACCACAAGGTGAACGGAGACGGTATCACGATGATGTTTCAATAGTA 2019
Query 2040 GTGATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATAGAAAA-CAA-TCCCTATGA 2097
||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 2020 GTGATCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATAAAAAAACAAATCCCTATGA 2079
Query 2098 GCATACACACAAGAACAAATTGGTGTGTTCATGGAGACAGAGATCGATCTCTCATCAACT 2157
||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2080 GCATAGACACAACAACAAATTGGTGTGTTCATGGAGAAAGAGATCGATCTCTCATCAACT 2139
Query 2158 CTGAATCATGTACTATGTTGATATAAACAGGAAATaaaaaaaGTTTTGGCAACTACTTAG 2217
||||||||||||| ||||||||| ||| | ||| ||||||||||||| ||||
Sbjct 2140 CTGAATCATGTACAATGTTGATA-AAA-A--AAA--------GTTTTGGCAACTATTTAG 2187
Query 2218 ATGTCCAATTGTGTCATAAATTAGAAGTCAAAGGTT-GGTTCTTTGAATGTGTAAGTTTC 2276
|||||||| ||| |||||||||||| |||||| ||| |||||||||||||| |||||||
Sbjct 2188 ATGTCCAAGTGTATCATAAATTAGAGGTCAAATGTTTGGTTCTTTGAATGT--AAGTTTC 2245
Query 2277 TTCCAACTACTAACTGTATGTGAATAGAGAAGTAAATGAAGGAATTGAAAGATGTTTGGT 2336
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2246 TTCCAACTACTAACTGTATGTGAATAGAGAAGTAAATGAAGGAATTGAACGATGTTTGGT 2305
> Ahg481804 jgi|Araly1|481804|fgenesh2_kg.4__864__AT2G28890.1
Length=2247
Score = 1245 bits (674), Expect = 0.0
Identities = 1551/1957 (79%), Gaps = 130/1957 (7%)
Strand=Plus/Plus
Query 183 GATCCTTTAGACGAAGGTTTAGGTCACTCCTTCTGCTACGTCCGACCAGACCCGACTCTA 242
|||||||||||||||||||||||||| || ||||| ||||| |||| |||||||| | |
Sbjct 238 GATCCTTTAGACGAAGGTTTAGGTCATTCTTTCTGTTACGTTAGACCCGACCCGACCCGA 297
Query 243 --ATCAGTTCCTCAAAAGTCCATTCAGAGGAAGACACAACGACGACAACGTTCCGTACAA 300
|| | || |||||||| || ||||| |||| | ||||||| |||||||||||||
Sbjct 298 GTTTC-G-TCTTCAAAAGTTCACTCAGAAGAAG--A-AACGACG---ACGTTCCGTACAA 349
Query 301 TCTCCGGCGCTTCCGTTAGCGCCAACACAGCTACTCCTCTCTCAACTTCTCTCTACGATC 360
||||||||||||||||||| || ||| | || || || ||||| |||||| | || ||||
Sbjct 350 TCTCCGGCGCTTCCGTTAGTGCTAACGCCGCCACACCACTCTCTACTTCTTTATATGATC 409
Query 361 CCTACGGTCACATCGACCGCGCCGCCGCATTCGAAAGCACGACTTCATTTTCGTCAATCC 420
| ||||| || ||||| | |||||||| |||||||||||||| || |||||||| || |
Sbjct 410 CTTACGGACATATCGATAGAGCCGCCGCGTTCGAAAGCACGACGTCGTTTTCGTCGATTC 469
Query 421 CTCTT-CAACCGATCCCCAAAAGCTCCGGTCCGATCGTTTTAGGCTCGGGTCCGATCGAA 479
|| || |||||||| || | ||| ||| ||||||| || || |||||||| | |||
Sbjct 470 CT-TTGCAACCGATTCCGAGAAGTTCCTGTCCGATTGTACCCGGTTCGGGTCCTTTAGAA 528
Query 480 AGAGGGTTCCTTTCAGGTCCGATCGAAAGAGGATTCATGTCGGGTCCTCTTGATCGGGTC 539
|||||||| ||||| |||||||| |||||||| |||||||| ||||| ||||| |
Sbjct 529 AGAGGGTTTCTTTCCGGTCCGATTGAAAGAGGTTTCATGTCCGGTCCACTTGA-----T- 582
Query 540 GGGTTATTCTCAGGTCCGCTTGATAAGCCAAACTCAGATCATCATCATCAGTTCCAACGT 599
|||| ||| | |||||| ||| | | |||| | | | || | |||| || || ||
Sbjct 583 -GGTTCTTC-C-GGTCCGATTGCT-GGTAAAAC-C-GGT--TC-TGATCAATTTCAGCGA 633
Query 600 AGCTTCTCTCATGGTTTAGCT--T-TACGGGTCGGGTCAAGAAAACGATCTTTGGTTCGG 656
|| |||||||||||||||||| | | ||||||||||| |||||| ||||||| ||||||
Sbjct 634 AGTTTCTCTCATGGTTTAGCTAATCTCCGGGTCGGGTCGAGAAAAGGATCTTTAGTTCGG 693
Query 657 ATCCTCCGTAGAGCAATCTCGAAAACGATGT-CAAGAGGGCAAAACTCGATCGTTGCTCC 715
| |||||| | ||||| ||||| ||||| | | ||||| |||||||| || ||||||||
Sbjct 694 GTTCTCCGTCGTGCAATTTCGAAGACGAT-TACTAGAGGACAAAACTCTATTGTTGCTCC 752
Query 716 GATCAAATCCGTTAAAGATTCCGATAACTGGGGAATT-AGGTC--AGAAAA----GAGCC 768
||||||||| |||||||| ||||| | ||| ||| |||| | |||| || ||
Sbjct 753 GATCAAATCGGTTAAAGAACCCGAT---T-GGGTATTCGGGTCGGATAAAACCCGGATCC 808
Query 769 GGAATTTGCA-CA-A-CGAGAAT---CTCACAGTGAATAGCTTGAACTTTAGCAGCGAAG 822
||| || || | ||||||| ||||| || ||||||||||| ||||| || ||||
Sbjct 809 AGAACCAACACCAGATCGAGAATAACCTCACTGTTAATAGCTTGAATTTTAGTAGTGAAG 868
Query 823 TTAG---CTTAGACGACGACGTTTCACTCGAAAACCAGAATCTTCAGTGGGCTCAGGGAA 879
|| ||||||||||||||||| | |||| |||||||||||| ||||| || || |
Sbjct 869 GAAGTTTATTAGACGACGACGTTTCGTTAGAAAGCCAGAATCTTCAATGGGCACAAGGTA 928
Query 880 AAGCCGGTGAGGATCGAGTACACGTGGTTGTATCGGAGGAGCACGGGTGGCTCTTCGTCG 939
|||||||||||||||| ||||| || ||||||||||| || || || ||||||||||| |
Sbjct 929 AAGCCGGTGAGGATCGTGTACATGTAGTTGTATCGGAAGAACATGGATGGCTCTTCGTTG 988
Query 940 GAATATACGACGGATTCAACGGTCCAGATGCGCCGGATTATCTT-CTCTCTCATCTCTAT 998
|||| ||||| |||||||||||||||||||| || || ||| || ||||||||| | |||
Sbjct 989 GAATCTACGATGGATTCAACGGTCCAGATGCACCTGACTAT-TTACTCTCTCATTTATAT 1047
Query 999 CCTGTCGTTCATCGAGAGCTCAAAGGATTGTTATGGGACGATTC-AAATGTCGA-AT-CC 1055
|| | ||||||||| ||||| |||||||| |||||||||||| | ||| | | || |
Sbjct 1048 CCAGCCGTTCATCGTGAGCTTAAAGGATTATTATGGGACGATCCTAAA--AC-AGATGCA 1104
Query 1056 AAATC-TCAGGATTTAGAAAGGTCTAACGGAGACGAATCTTG-TTC-AAATC--AGGAAA 1110
||||| || || | | || | || | | ||| ||||| || || | || || |||
Sbjct 1105 AAATCTTC-CGA--T-G-AA-G-CTGATGTAGA-GAATCGTGACTCGAGTTCTGAGAAAA 1156
Query 1111 AG-GATGAGACTTGTGAGCGATGGTGGA-GA-TGT-GA-ATGGGATCGTGAAAGTCAAGA 1165
|| | ||| ||| || || || | || || || ||| || ||| | || |||
Sbjct 1157 AGTCA-AAGAATTGGGA-AGAAAGTCAACGACGGTGGAGATGTGA--GTGGGA-TCGAGA 1211
Query 1166 TCTTGACCGTCGATTAAAGGAACAGATTAGTCGGAG-AAGTGGGTCGGATC-GGTTAACG 1223
|||||||||| || | ||| || | |||||| || ||||||||||| | | ||
Sbjct 1212 TCTTGACCGT---TT-ATTGAA-AG---A-TCGGAGTAA-TGGGTCGGATCTAGAT-CCG 1260
Query 1224 AAT-C--ATTCG---GAAGTATTAG-AGGCTCTGTCACAAG-CTCTGAGGAAAACAGAGG 1275
|| | ||||| || ||||| | | ||| ||||||||| || ||||||| || || |
Sbjct 1261 GATCCGAATTCGTCTGATGTATT-GAAAGCTTTGTCACAAGCCT-TGAGGAAGACGGAAG 1318
Query 1276 AAGCGTATTTAGATACTGCAGATAAGATGCTCGACGAAAATCCTGAACTAGCTTTGATGG 1335
|||| ||||| || | |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1319 AAGCTTATTTGGAGAATGCAGATATGATGCTCGACGAAAATCCTGAACTAGCTTTAATGG 1378
Query 1336 GTTCTTGTGTT-TTGGTCATGTTAATGAAAGGTGAAGATATTTATGTGATGAATGTTGGT 1394
||||||||||| || || ||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 1379 GTTCTTGTGTTCTT-GTTATGTTGATGAAAGGTGAAGATGTTTATTTGATGAATGTTGGT 1437
Query 1395 GATAGTAGAGCTGTGCTTGGTCAGAAATCAGAACCG-GATTACTGG-TTAGCTAAGATTA 1452
|||||||||||||| ||||| || ||| | | | | || || ||| || | ||||| |
Sbjct 1438 GATAGTAGAGCTGTTCTTGGGCAAAAAGCTG-AGAGTGAGTATTGGATT-GGGAAGATAA 1495
Query 1453 GACAGGATTTGGAACGGATTAACGAGGAAACGATGATGAATGATTTGGA-AG--GTTGTG 1509
| || ||||||||||| || || || ||||| | ||||||||||| || | ||||||
Sbjct 1496 GGCAAGATTTGGAACGTATCAATGAAGAAAC--T-ATGAATGATTTTGATGGTTGTTGTG 1552
Query 1510 AAGGAGATCAATCAT-CTTTAGTCCCGAATTTATCGGCTTTTCAGCTCACTGTTGATCAC 1568
| || || | | | ||| || ||||||||||||||||||||||| |||||||||||
Sbjct 1553 ATGGTGAAGGAGC-TAGTTTGGTTCCGAATTTATCGGCTTTTCAGCTTACTGTTGATCAT 1611
Query 1569 AGCACAAATATAGAAGAAGAAGTTGAGAGAA-TCAGAAACGAGCATCCCGATGATGTTAC 1627
||||| ||| ||||||| |||||||| |||| || |||| |||||||| ||||||| |
Sbjct 1612 AGCACTAATGTAGAAGAGGAAGTTGATAGAATTC-GAAAGGAGCATCCGGATGATGCGAG 1670
Query 1628 CGCGGTAACGAATGAACGGGTTAAAGGCTCCTTAAAGGTCACAAGAGCGTTT-GGTGCTG 1686
||||| |||||||||| |||||||| || || |||||||| ||||| ||| || || |
Sbjct 1671 TGCGGTTTCGAATGAACGTGTTAAAGGTTCTTTGAAGGTCACTAGAGC-TTTCGGCGCAG 1729
Query 1687 GTTTCCTTAAGCAGCCTAAATGGAACAATGCACTTCTTGAGATGTTCCAAATTGATTACG 1746
||||||| ||||||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct 1730 GTTTCCTCAAGCAGCCTAAATGGAATAACGCGCTTCTTGAGATGTTTCAAATCGATTACA 1789
Query 1747 TTGGGA-AGTCTCCATACATCAACTGCTTACCGTCTCTCTACCACCACAGATTAGGGTCC 1805
|||| | ||||| |||||||||||||| || || || ||||| || |||||||| ||
Sbjct 1790 AAGGGACA-TCTCCTTACATCAACTGCTTGCCATCACTTTACCATCATAGATTAGGCTCT 1848
Query 1806 AAGGACCGGTTTCTAATACTATCATCGGATGGTCTCTACCAATACTTCACAAACGAAGAA 1865
|| |||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1849 AAAGACCAGTTTCTGATACTATCCTCGGATGGTCTTTACCAATATTTCACAAACGAAGAA 1908
Query 1866 GCTGTTTCAGAGGTTGAGCTCTTCATCACATTACAACCTGAAGGGGATCCAGCTCAACAC 1925
|| ||||||||||| || ||||| |||||||| || |||||||| || || ||||| ||
Sbjct 1909 GCGGTTTCAGAGGTCGAACTCTTTATCACATTGCAGCCTGAAGGTGACCCGGCTCAGCA- 1967
Query 1926 CTT-GTGCAAGAGCTT-TTGTTTAGAGCTGCTAAGAAAGCTGGTATGGATTTCCATGAAT 1983
||| || ||||||||| || || | |||||||||||||||||||||||||||||||||
Sbjct 1968 CTTGGTTCAAGAGCTTCTT-TTCCGTGCTGCTAAGAAAGCTGGTATGGATTTCCATGAAC 2026
Query 1984 TGCTAGAGATACCACAAGGTGAACGAAGACGGTATCACGATGATGTTTCAATAGTAGTGA 2043
| || |||||||| ||||| ||||| |||||||| |||||||||||||| || ||||| |
Sbjct 2027 TACTTGAGATACCGCAAGGGGAACGGAGACGGTACCACGATGATGTTTCCATTGTAGTAA 2086
Query 2044 TCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATA 2080
|||||||||||||||||||||||||||||||||||||
Sbjct 2087 TCTCTTTAGAAGGAAGAATGTGGAAATCTTGTGTATA 2123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87988465950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5