BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07640.3
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910452 jgi|Araly1|910452|Al_scaffold_0001_706 1400 0.0
> Ahg910452 jgi|Araly1|910452|Al_scaffold_0001_706
Length=987
Score = 1400 bits (758), Expect = 0.0
Identities = 930/1007 (92%), Gaps = 35/1007 (3%)
Strand=Plus/Plus
Query 242 GCCTACGAATTCGAATCATCAGCATCATCTTCAACACCAGCTTAACGAAAATGGAAGTAT 301
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 3 GCCTACGAATTCGAATCATCAGCATCATCATCAGCACCAGCTTCTCGAAAATGGAAGTAT 62
Query 302 AATAAGTGGCCACGGACTAGTACTCTCTCACCAACTTCCACCTCTCCAAGCAAACCCTAA 361
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AATTAGTGGCCACGGAC---TACTCTCTCACCAACTTCCACCTCTCCAAGCAAACCCTAA 119
Query 362 CCCTAACCACCACCATGTCGCTACCTCTGCTGGTCTTCCGTCAAGGATGGGTGGATCGAT 421
||||| |||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 120 CCCTAGCCACCAATATGTCGCTACCTCTGCTGGTCTTCCGTC---GA------GATCGAT 170
Query 422 GGCGGAGAGAGCAAGGCAGGCCAACATTCCTCCA-CTAGCGGGACCCCTAAAGTGTCCTC 480
|||||||||||| |||| ||||| ||||||||| || | ||||||||||||||||||||
Sbjct 171 GGCGGAGAGAGCGCGGCAAGCCAAAATTCCTCCACCT-GAGGGACCCCTAAAGTGTCCTC 229
Query 481 GATGCGACTCCAGCAACACTAAGTTCTGTTACTACAACAACTATAACCTCACTCAGCCTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GATGCGACTCCAGCAACACTAAGTTCTGTTACTACAACAACTATAACCTCACTCAGCCTC 289
Query 541 GTCACTTCTGCAAAGGTTGCCGTCGCTACTGGACACAAGGGGGCGCCCTGAGAAACGTCC 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 290 GTCACTTCTGCAAAGGTTGCCGTCGCTACTGGACACAAGGCGGCGCCCTGAGAAACGTCC 349
Query 601 CTGTAGGTGGAGGCTGCCGGAGGAATAACAAGAAGGGCAAAAATGGAAATTTAAAATCTT 660
|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 350 CTGTCGGTGGAGGCTGCCGGAGGAACAACAAGAAGGGCAAAAATGGAAATTCAAAATCTT 409
Query 661 CTTCTTCTTCGTCCAAACAGTCTTC--C-TCGGTCAACGCTCAAAGTCCTAGCTCAGGAC 717
||||||||||||||||||||||||| | |||| ||||| || |||||||||||||||||
Sbjct 410 CTTCTTCTTCGTCCAAACAGTCTTCTTCCTCGGCCAACGTTCCAAGTCCTAGCTCAGGAC 469
Query 718 AGCTAAGGACAAATCATCAGTTCCCTTTTTCACCAACTCTTTACAATCTCACTCAACTCG 777
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 470 AGCTAAGGACAAATCATCAGTTCCCGTTTTCACCAACTCTTTTTAATCTCACTCAACTCG 529
Query 778 GAGGTATTGGTTTGAACTTAGCCGCTACTAATGGCAACAACCAAGCTCACCAGATCGGTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GAGGTATTGGTTTGAACTTAGCCGCTACTAATGGCAACAACCAAGCTCACCAGATCGGTT 589
Query 838 CCAGTTTGATGATGAGCGATCTAGGGTTTCTCCATG--G-A------CGAAATACTTCAA 888
| |||||||||| | |||| ||||||||||||||| | | |||||||||||||
Sbjct 590 CGAGTTTGATGA--A-CGATTTAGGGTTTCTCCATGTCGGAAATGGACGAAATACTTCAA 646
Query 889 CTCCGATGACGGGAAACATTCATGAAAACAACAACAATAATAACAATGAAAACAACCTAA 948
|||||||||| |||||||||||||||||||||||||| || | ||||||||||| |
Sbjct 647 CTCCGATGACAGGAAACATTCATGAAAACAACAACAACAA---C---GAAAACAACCTGA 700
Query 949 TGGCATCCGTTGGATCTTTGAGCCCCTTTGCTCTCTTCGATCCAACGACGGGGCTATACG 1008
|||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 701 TGGCATCCGTTGGATCGTTGAGTCACTTTGCTCTCTTCGATCCAACAACGGGGCTATACG 760
Query 1009 CTTTCCAGAACGACGGTAATATCGGGAACAACGTTGGGATATCTGGTTCTTCTACTTCCA 1068
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 761 CTTTCCAGAACGAGGGTAATATCGGAAACAACGTTGGGATATCTGGTTCTTCTACTTCAA 820
Query 1069 TGGTTGATTCTAGGGTTTATCAGACGCCTCCGGTGAAGATGGAAGAACAACCTAATTTGG 1128
||| ||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 821 TGGCTGATTCTAGGGTTTATCAGACGCCTCCCGTAAAGATGGAAGAGCAACCTAATTTGG 880
Query 1129 CTAACTTGTCTAGACCGGTCTCCGGTTTGACGTCTCCTGGGAATCAAACAAATCAGTACT 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 CTAACTTGTCTAGACCGGTCTCCGGTTTGACGTCTCCTGGGAATCAAACAAATCAGTACT 940
Query 1189 TTTGGCCTGGTTCGGATTTCTCGGGTCCTTCTAATGATCTCTTGTGA 1235
||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 941 TTTGGCCCGGTTCGGATTTCTCTGGTCCTTCTAATGATCTCCTGTGA 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5