BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07645.1

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334053 jgi|Araly1|334053|fgenesh1_pg.C_scaffold_1000618           665    0.0  


> Ahg334053 jgi|Araly1|334053|fgenesh1_pg.C_scaffold_1000618
Length=414

 Score =  665 bits (360),  Expect = 0.0
 Identities = 396/414 (96%), Gaps = 0/414 (0%)
 Strand=Plus/Plus

Query  37   ATGGCAGCTAATATGATGAGACCGGCGTTTGCTTACACTGTTGTGTACGTGAAGGACGTA  96
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGCAGCGAATATGATGAGACCGGCGTTTGCTTACACTGTTGTGTATGTGAAGGACGTA  60

Query  97   GCTAAATCTGTAGAATTCTACTCTAGAGCTTTTGGTCACAACGTCCGTCGTCTTGACGAA  156
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   GCTAAATCCGTAGAATTCTACTCTAGAGCTTTTGGTCACAACGTCCGTCGTCTTGACGAG  120

Query  157  TCCCACAGGTGGGGGGAGCTAGAGAGCGGGCAAACCACGATAGCGTTCACACCGCTTCAC  216
            ||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||
Sbjct  121  TCCCACAGGTGGGGGGAGCTAGAGAGCGGGCAAACGACAATAGCGTTCACACCACTACAC  180

Query  217  CAGCATGAGACCGACGACCTAACCGGGAAGGTTCAGGCTACGCAGTCAGCACGTGAAAGA  276
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  CAGCATGAGACCGACGACCTAACCGGGAAGGTTCAGGCTACGCAGTCAGCCCGTGAAAGA  240

Query  277  GCACCCATCGAAGTCTGCTTCTGTTACCCTGATGTTGATGCCGCTTTCAAGAGAGCGGTG  336
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  241  GCACCCATCGAAGTCTGCTTCTGTTACCCCGATGTTGATGCCGCTTTCAAGAGAGCGGTG  300

Query  337  GAGAACGGTGCGGAGGCAGTGAGCAAGCCGGAAGATAAAGAATGGGGGCAGAAGGTTGGA  396
            ||||||||||||| | | |||||| |||||||||| ||||||||||| ||||||||||||
Sbjct  301  GAGAACGGTGCGGTGACTGTGAGCGAGCCGGAAGACAAAGAATGGGGTCAGAAGGTTGGA  360

Query  397  TACGTGCGAGACATTGACGGCATTGTTGTACGCATCGGAAGCCACGTTAAGTGA  450
            |||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  361  TACGTGAGAGACATTGACGGCATCGTTGTACGCATCGGAAGCCACGTTAAGTGA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22873750200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5