BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07660.1

Length=717
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2          556    6e-158
  Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2          545    1e-154


> Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2
Length=441

 Score =  556 bits (301),  Expect = 6e-158
 Identities = 313/319 (98%), Gaps = 0/319 (0%)
 Strand=Plus/Plus

Query  190  AAGAGATGTCaggaagaggaaagggaggaaaaggattgggaaagggaggagcgaagaggc  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  42   AAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAGGC  101

Query  250  acaggaaggttctgagggaTAACATTCAAGGAATCACCAAGCCTGCTATTCGTCGTCTTG  309
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  102  ACAGGAAGGTTCTGAGGGATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTG  161

Query  310  CTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  162  CTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC  221

Query  370  TCAAGATCTTCCTCGAGAATGTTATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA  429
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  222  TCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA  281

Query  430  GGAAGACGGTGACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCT  489
            ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  282  GGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCT  341

Query  490  ACGGTTTCGGAGGTTAATC  508
            |||||||||| ||||||||
Sbjct  342  ACGGTTTCGGCGGTTAATC  360


> Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2
Length=483

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 311/319 (97%), Gaps = 0/319 (0%)
 Strand=Plus/Plus

Query  190  AAGAGATGTCaggaagaggaaagggaggaaaaggattgggaaagggaggagcgaagaggc  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  33   AAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGAAGAGGC  92

Query  250  acaggaaggttctgagggaTAACATTCAAGGAATCACCAAGCCTGCTATTCGTCGTCTTG  309
            | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  93   ATAGGAAGGTTCTGAGGGATAACATTCAAGGTATCACCAAGCCTGCTATTCGTCGTCTTG  152

Query  310  CTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC  369
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  153  CTCGCAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAGGTGTCC  212

Query  370  TCAAGATCTTCCTCGAGAATGTTATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA  429
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  213  TCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACGCCAGGA  272

Query  430  GGAAGACGGTGACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTACTCTCT  489
            ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  273  GGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCACTCTCT  332

Query  490  ACGGTTTCGGAGGTTAATC  508
            |||||||||| ||||||||
Sbjct  333  ACGGTTTCGGCGGTTAATC  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26381058564


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5