BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07680.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470795 jgi|Araly1|470795|fgenesh2_kg.1__749__AT1G07680.1 680 0.0
> Ahg470795 jgi|Araly1|470795|fgenesh2_kg.1__749__AT1G07680.1
Length=654
Score = 680 bits (368), Expect = 0.0
Identities = 596/697 (86%), Gaps = 52/697 (7%)
Strand=Plus/Plus
Query 2 CTCCGGTTAACGTAAAAAGACTGATCA---ATCATCTTTTCTAGACCCAACAATGTTCTC 58
||||||||||||||| || |||||||| ||||| ||||||||||| ||| ||||||||
Sbjct 1 CTCCGGTTAACGTAAGAATACTGATCATTTATCATATTTTCTAGACCTAACTATGTTCTC 60
Query 59 GCTCCGTACCCTTGTTGTTCTACTTCTCTTCACTTTGATAGCTATTGTTGGATCCATCAA 118
||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 61 GCTCCGTACCCTTCTTGTTATACTTCTCTTTGCTTTGATAGCAATTGTTGGATCCATCAA 120
Query 119 TGGAGAACCGGGGTGTGATTCATCATCATCTCCCACCTGGGAAGACTTGCACGACGAACA 178
||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 121 TGGGGAACCGGGGTGTG-GTGGT--TCATCTCCCACCTGGGAAGACTTGCACGACGAACA 177
Query 179 AGCACGAC-AAAGTCTAGACAATGCAGATAAGTTTGGTAGGATCACTCTTAATTGTGAAA 237
||| | || ||| | | ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 178 AGCGCAACGAAA-TTTGGACAATGCAGACAAGTTTGGTAGGATCACTCTTGATTGTGAAA 236
Query 238 CTACTGTTGGTGGAGGCAACGGTGGAAACAACGGTTTCGTGACGATTATAGACTTAGCCG 297
|||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 237 CTACTGGTGGTGGAGGCAACGGTGCAAACAACGGTTTCGTGACGATTATAGACCTATCCT 296
Query 298 TTGGTCTCTTCTTTCTTATTCTTGTCGCCATTGGAATCTGGTTTTGCTGCGTCAGAAGAC 357
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 297 TTGGTCTCTTCTTTTTTATTTTTGTCGCCATTGGAATCTGGTTTTTCTGCGTCCGAAGAC 356
Query 358 AAAAGGTTATGAACGCAGCTATTGTCCAA-TCCTATCCAGGACAATTGGGAGCTAAAGAG 416
|||||| || |||||||||||||| || |||| |||||||||| |||||||||||| |
Sbjct 357 AAAAGGCCATCAACGCAGCTATTGT-TAACTCCTCTCCAGGACAAGTGGGAGCTAAAGGG 415
Query 417 ATGGGCTATGGAATGGACGGGAAGACGAAAACAGTTGCCATGACCATGAGTGCTCCAGCA 476
| ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct 416 AAGGGCTATGGAATGGATGAGAAGACGAAAACAGTTGCCATGACCATGGGTGCTCCAGCA 475
Query 477 GGAAAGCTTTCAAATGGTGACACCAATGTTTGAAACAATAATTGATCAAACAAAAATGTT 536
||||||||||||||||||||||||||||||||||| | | ||||| | |||| ||
Sbjct 476 GGAAAGCTTTCAAATGGTGACACCAATGTTTGAAA-A-TGTTTGAT-A--CAAATAT--- 527
Query 537 TGAAACAATAATTAAATTCTCTTGAttttttttttCCTTGTCAAGATTTTGTTTTTGCTA 596
| |||||||| |||||||||||||| | || | ||||| |||
Sbjct 528 --A--CAATAATTGAATTCTCTTGATTT-------C-TT-T-----TTTTG------CTA 563
Query 597 TA-AGTGATATGATGATCTTTAATCTCTGTTGTTGTCGTCGTTACATTACACACAATTTC 655
|| | ||||||||||||| | ||||| |||||||||| |||||||||||| | ||||
Sbjct 564 TAGA-TGATATGATGATCGT----CTCTGCTGTTGTCGTCCTTACATTACACATAGTTTC 618
Query 656 AAAAGCTTGT--AACTAAATACTTTGAT-ATCTTTAA 689
|||||||||| ||||||||||||| || ||||||||
Sbjct 619 AAAAGCTTGTGTAACTAAATACTTT-ATTATCTTTAA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5