BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07690.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334057 jgi|Araly1|334057|fgenesh1_pg.C_scaffold_1000622           195    4e-49


> Ahg334057 jgi|Araly1|334057|fgenesh1_pg.C_scaffold_1000622
Length=474

 Score =  195 bits (105),  Expect = 4e-49
 Identities = 160/186 (86%), Gaps = 5/186 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTTCTAATCTTCTCCTCATCGTCCTCCTCGTACTCGTGTCCCTCTCTTTAGCTTCT  60
            ||||||||||||||| | |||||||||||||||||| | ||||| ||||||||| ||| |
Sbjct  1    ATGGCTTCTAATCTTGTACTCATCGTCCTCCTCGTATTTGTGTCTCTCTCTTTAACTTGT  60

Query  61   GGATATTCTTTTTC-CAC---GAGAGATGCTGTCTCAAAACAAGACGATGAATCCTATAT  116
            |||||||| |  ||  ||   |||||||||||||||||||||||||||||| || ||| |
Sbjct  61   GGATATTC-TCCTCGTACTTTGAGAGATGCTGTCTCAAAACAAGACGATGATTCATATGT  119

Query  117  TATGACTACGAGTGATCAAGATTCTTCAATGGTCGTTCTTGAAGATGTAGTAAAAGGTCG  176
             ||| |||||||||||||||| || || ||||||||| |||||||| |||||||||||||
Sbjct  120  CATGGCTACGAGTGATCAAGAATCATCGATGGTCGTTGTTGAAGATATAGTAAAAGGTCG  179

Query  177  TCGTCT  182
            || |||
Sbjct  180  TCTTCT  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5