BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07700.3 Length=1539 Score E Sequences producing significant alignments: (Bits) Value Ahg910459 jgi|Araly1|910459|Al_scaffold_0001_713 876 0.0 Ahg481585 jgi|Araly1|481585|fgenesh2_kg.4__645__AT1G07700.2 665 0.0 Ahg338394 jgi|Araly1|338394|fgenesh1_pg.C_scaffold_2000493 231 9e-60 Ahg948373 jgi|Araly1|948373|scaffold_800260.1 154 2e-36 > Ahg910459 jgi|Araly1|910459|Al_scaffold_0001_713 Length=621 Score = 876 bits (474), Expect = 0.0 Identities = 564/606 (93%), Gaps = 12/606 (2%) Strand=Plus/Plus Query 708 ATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACT 767 |||| ||||||||||| || |||||||||||||||| ||||||||||||| || | ||| Sbjct 19 ATATATCACTGTAGCTCTCTTGGATACTCAGGACTCTCTAGTAGGGGAGG--TATA-ACT 75 Query 768 GTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCC 827 |||| |||| ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 76 GTTGGAAACTGTAGATGGGTCTGGCACAGCGGTGGAGTCAGGTTGTCGTTTCCAAGAGCT 135 Query 828 GAGTC-T--T-C-----TATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCA 878 ||||| | | | |||||||||| | || ||||||||| |||||| ||||| |||| Sbjct 136 GAGTCTTCATCCATGAGTATAAACATCGCAATTGGTTGTACGTTTCAGCATGGGAGAGCA 195 Query 879 AAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCT 938 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 196 AAAAGCTTAAGTCAGGAAAACGTAGTGGAGTTATCTGATGAAAACGATGATCTATGTCCT 255 Query 939 GTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCG 998 |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 256 GTGGAGTGTGTCACTGAGTTCAAGACCGATGATGAATTGCTTAGAGTCCTTGAAAAGTCG 315 Query 999 AAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAA 1058 ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 316 AAAGAAACTAATTCTCTGGTCGTGGTTGATTTTTATCGCACTGCTTGTGGGAGTTGTAAA 375 Query 1059 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 1118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 435 Query 1119 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 495 Query 1179 CTCCGTATCAAGGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCA 1238 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 496 CTCCGTATCAAGGCGGTTCCTCTCTTCCACTTCTACAAAAATGGAGTTCTCTTAGAATCA 555 Query 1239 TTTGCAACTAGAGACAAGGAGAGGATCGACGCAGCTATTCTCAAATATACATCCTCGGAA 1298 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 556 TTTGCAACTAGAGACAAGGAGAGGATCGACACTGCTATTCTCAAATATACATCCTCGGAA 615 Query 1299 TCTTGA 1304 |||||| Sbjct 616 TCTTGA 621 > Ahg481585 jgi|Araly1|481585|fgenesh2_kg.4__645__AT1G07700.2 Length=1062 Score = 665 bits (360), Expect = 0.0 Identities = 450/492 (91%), Gaps = 12/492 (2%) Strand=Plus/Plus Query 708 ATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACT 767 |||| ||||||||||| || |||||||||||||||| ||||||||||||| || | ||| Sbjct 496 ATATATCACTGTAGCTCTCTTGGATACTCAGGACTCTCTAGTAGGGGAGG--TATA-ACT 552 Query 768 GTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCC 827 |||| |||| ||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 553 GTTGGAAACTGTAGATGGGTCTGGCACAGCGGTGGAGTCAGGTTGTCGTTTCCAAGAGTT 612 Query 828 GAGTC-T--T-C-----TATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCA 878 ||||| | | | ||||||||| | |||||||||||| |||||| ||||| |||| Sbjct 613 GAGTCTTCATCCATGAGTATAAACATTGCAATGGGTTGTACGTTTCAGCATGGGAGAGCA 672 Query 879 AAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCT 938 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 673 AAAAGCTTAAGTCAGGAAAACGTAGTGGAGTTATCTGATGAAAACGATGATCTATGTCCT 732 Query 939 GTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCG 998 |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 733 GTGGAGTGTGTCACTGAGTTCAAGACCGATGATGAATTGCTTAGAGTCCTTGAAAAGTCG 792 Query 999 AAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAA 1058 ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| | Sbjct 793 AAAGAAACTAATTCTCTGGTCGTGGTTGATTTTTATCGCACTGCTTGTGGGAGTTGTACA 852 Query 1059 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 1118 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 853 TACATAGAGCAGGGCTTCTCAAAAGTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 912 Query 1119 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 972 Query 1179 CTCCGTATCAAG 1190 |||||||||||| Sbjct 973 CTCCGTATCAAG 984 Score = 494 bits (267), Expect = 1e-138 Identities = 433/508 (85%), Gaps = 32/508 (6%) Strand=Plus/Plus Query 95 CAAAAGAACGCAACTTTTATTTCGAAAG-TTCGATCCTTTGGGTCCATAGTATTGAC-GG 152 |||||||||||||||||| ||| | ||| ||||||||||||||||| ||||| || Sbjct 3 CAAAAGAACGCAACTTTTTTTTTTTTGGTTTC-ATCCTTTGGGTCCATAGCGTTGACAGG 61 Query 153 --GTGAGTAGATTACAATTCTGATTGCTTTA-GG----G--TTTTTGCCGA-TTTGGGGA 202 || ||||||||||| ||| ||||||||| || | |||||||||| |||||||| Sbjct 62 TCCTGTGTAGATTACAAATCTAATTGCTTTAGGGTTTTGTCTTTTTGCCGATTTTGGGGA 121 Query 203 TGGTTGATCTTTCAGTTGAATCCTTAATCTGATTTGCTGACATTAGAAGGTTCATTCCAT 262 |||||||||||||| | ||||||||||||||| ||||||||||||||| |||||| ||| Sbjct 122 TGGTTGATCTTTCAATCGAATCCTTAATCTGA-TTGCTGACATTAGAATGTTCATCCCA- 179 Query 263 GTTTTGTCTTAATCCCCATCTAGTTGCCGAAAGGGTTTAGATTTTGGGGTCATTGCTTGA 322 ||||||||||||| |||||||||||| ||||||||||||| | | |||||||| Sbjct 180 GTTTTGTCTTAATTCCCATCTAGTTGGTGAAAGGGTTTAGA---T----T--TTGCTTGA 230 Query 323 AATTTATGCTTCAGATGCGTTGATCTTGTACCGTTTAGAACTCTGTGTTGTACTCGGATT 382 ||||||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||| Sbjct 231 AATTTATGCTTCAGATGCGTTGAAGTTGTACTGTTTATAATTCTGTGTTGTACTTGGATT 290 Query 383 CAAAGTTGTTCCCTTTACATGTCATATCTCTGTTTTGGTTATTTTCATGCCTCACCATTG 442 |||||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||||| Sbjct 291 CAAAGTTGTTGCCTTTACATGTCATATATCTGTTTTGGCTATTT-CATGCCTCACCATTG 349 Query 443 AATTCTTCGTTTCAGGCCACTCAACCAACTACGAGTGCTATCTTTCACCCCTGAGTTCAC 502 ||| ||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||| Sbjct 350 AATCCTTCGTTTCAGGCCAATCAACCATTTACGAGAGCTATCTTTCAGGCCTGAGTTCAC 409 Query 503 TGAAAGTGTTCCTGCTTGGTTTGCTGATGAG-CT-A-T-T-GCTTGTGGAGTTAGTTTAA 557 | |||| || |||||||| |||||| ||||| || | | | | |||||||||| | ||| Sbjct 410 TTAAAGGGTCCCTGCTTGATTTGCTTATGAGACTGACTATTGTTTGTGGAGTT-GAATAA 468 Query 558 ATATCTGCAAATGTCAAGTCTTCTTAAT 585 ||||||||||||||||||||||||||| Sbjct 469 -TATCTGCAAATGTCAAGTCTTCTTAAT 495 > Ahg338394 jgi|Araly1|338394|fgenesh1_pg.C_scaffold_2000493 Length=303 Score = 231 bits (125), Expect = 9e-60 Identities = 125/125 (100%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1066 AGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTTATCTTCC 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149 AGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTTATCTTCC 208 Query 1126 TTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTA 1185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 TTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTA 268 Query 1186 TCAAG 1190 ||||| Sbjct 269 TCAAG 273 > Ahg948373 jgi|Araly1|948373|scaffold_800260.1 Length=205 Score = 154 bits (83), Expect = 2e-36 Identities = 83/83 (100%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 1109 AGCTCCTGTTATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGT 1168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 AGCTCCTGTTATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGT 148 Query 1169 CGCAGAAAGGCTCCGTATCAAGG 1191 ||||||||||||||||||||||| Sbjct 149 CGCAGAAAGGCTCCGTATCAAGG 171 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57630540685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5