BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07700.3
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910459 jgi|Araly1|910459|Al_scaffold_0001_713 876 0.0
Ahg481585 jgi|Araly1|481585|fgenesh2_kg.4__645__AT1G07700.2 665 0.0
Ahg338394 jgi|Araly1|338394|fgenesh1_pg.C_scaffold_2000493 231 9e-60
Ahg948373 jgi|Araly1|948373|scaffold_800260.1 154 2e-36
> Ahg910459 jgi|Araly1|910459|Al_scaffold_0001_713
Length=621
Score = 876 bits (474), Expect = 0.0
Identities = 564/606 (93%), Gaps = 12/606 (2%)
Strand=Plus/Plus
Query 708 ATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACT 767
|||| ||||||||||| || |||||||||||||||| ||||||||||||| || | |||
Sbjct 19 ATATATCACTGTAGCTCTCTTGGATACTCAGGACTCTCTAGTAGGGGAGG--TATA-ACT 75
Query 768 GTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCC 827
|||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 76 GTTGGAAACTGTAGATGGGTCTGGCACAGCGGTGGAGTCAGGTTGTCGTTTCCAAGAGCT 135
Query 828 GAGTC-T--T-C-----TATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCA 878
||||| | | | |||||||||| | || ||||||||| |||||| ||||| ||||
Sbjct 136 GAGTCTTCATCCATGAGTATAAACATCGCAATTGGTTGTACGTTTCAGCATGGGAGAGCA 195
Query 879 AAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCT 938
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 196 AAAAGCTTAAGTCAGGAAAACGTAGTGGAGTTATCTGATGAAAACGATGATCTATGTCCT 255
Query 939 GTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCG 998
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 256 GTGGAGTGTGTCACTGAGTTCAAGACCGATGATGAATTGCTTAGAGTCCTTGAAAAGTCG 315
Query 999 AAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAA 1058
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 316 AAAGAAACTAATTCTCTGGTCGTGGTTGATTTTTATCGCACTGCTTGTGGGAGTTGTAAA 375
Query 1059 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 435
Query 1119 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 495
Query 1179 CTCCGTATCAAGGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCA 1238
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 496 CTCCGTATCAAGGCGGTTCCTCTCTTCCACTTCTACAAAAATGGAGTTCTCTTAGAATCA 555
Query 1239 TTTGCAACTAGAGACAAGGAGAGGATCGACGCAGCTATTCTCAAATATACATCCTCGGAA 1298
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 556 TTTGCAACTAGAGACAAGGAGAGGATCGACACTGCTATTCTCAAATATACATCCTCGGAA 615
Query 1299 TCTTGA 1304
||||||
Sbjct 616 TCTTGA 621
> Ahg481585 jgi|Araly1|481585|fgenesh2_kg.4__645__AT1G07700.2
Length=1062
Score = 665 bits (360), Expect = 0.0
Identities = 450/492 (91%), Gaps = 12/492 (2%)
Strand=Plus/Plus
Query 708 ATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACT 767
|||| ||||||||||| || |||||||||||||||| ||||||||||||| || | |||
Sbjct 496 ATATATCACTGTAGCTCTCTTGGATACTCAGGACTCTCTAGTAGGGGAGG--TATA-ACT 552
Query 768 GTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCC 827
|||| |||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 553 GTTGGAAACTGTAGATGGGTCTGGCACAGCGGTGGAGTCAGGTTGTCGTTTCCAAGAGTT 612
Query 828 GAGTC-T--T-C-----TATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCA 878
||||| | | | ||||||||| | |||||||||||| |||||| ||||| ||||
Sbjct 613 GAGTCTTCATCCATGAGTATAAACATTGCAATGGGTTGTACGTTTCAGCATGGGAGAGCA 672
Query 879 AAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCT 938
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 673 AAAAGCTTAAGTCAGGAAAACGTAGTGGAGTTATCTGATGAAAACGATGATCTATGTCCT 732
Query 939 GTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCG 998
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 733 GTGGAGTGTGTCACTGAGTTCAAGACCGATGATGAATTGCTTAGAGTCCTTGAAAAGTCG 792
Query 999 AAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAA 1058
||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct 793 AAAGAAACTAATTCTCTGGTCGTGGTTGATTTTTATCGCACTGCTTGTGGGAGTTGTACA 852
Query 1059 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 1118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 853 TACATAGAGCAGGGCTTCTCAAAAGTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 912
Query 1119 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 972
Query 1179 CTCCGTATCAAG 1190
||||||||||||
Sbjct 973 CTCCGTATCAAG 984
Score = 494 bits (267), Expect = 1e-138
Identities = 433/508 (85%), Gaps = 32/508 (6%)
Strand=Plus/Plus
Query 95 CAAAAGAACGCAACTTTTATTTCGAAAG-TTCGATCCTTTGGGTCCATAGTATTGAC-GG 152
|||||||||||||||||| ||| | ||| ||||||||||||||||| ||||| ||
Sbjct 3 CAAAAGAACGCAACTTTTTTTTTTTTGGTTTC-ATCCTTTGGGTCCATAGCGTTGACAGG 61
Query 153 --GTGAGTAGATTACAATTCTGATTGCTTTA-GG----G--TTTTTGCCGA-TTTGGGGA 202
|| ||||||||||| ||| ||||||||| || | |||||||||| ||||||||
Sbjct 62 TCCTGTGTAGATTACAAATCTAATTGCTTTAGGGTTTTGTCTTTTTGCCGATTTTGGGGA 121
Query 203 TGGTTGATCTTTCAGTTGAATCCTTAATCTGATTTGCTGACATTAGAAGGTTCATTCCAT 262
|||||||||||||| | ||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 122 TGGTTGATCTTTCAATCGAATCCTTAATCTGA-TTGCTGACATTAGAATGTTCATCCCA- 179
Query 263 GTTTTGTCTTAATCCCCATCTAGTTGCCGAAAGGGTTTAGATTTTGGGGTCATTGCTTGA 322
||||||||||||| |||||||||||| ||||||||||||| | | ||||||||
Sbjct 180 GTTTTGTCTTAATTCCCATCTAGTTGGTGAAAGGGTTTAGA---T----T--TTGCTTGA 230
Query 323 AATTTATGCTTCAGATGCGTTGATCTTGTACCGTTTAGAACTCTGTGTTGTACTCGGATT 382
||||||||||||||||||||||| |||||| ||||| || ||||||||||||| |||||
Sbjct 231 AATTTATGCTTCAGATGCGTTGAAGTTGTACTGTTTATAATTCTGTGTTGTACTTGGATT 290
Query 383 CAAAGTTGTTCCCTTTACATGTCATATCTCTGTTTTGGTTATTTTCATGCCTCACCATTG 442
|||||||||| |||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 291 CAAAGTTGTTGCCTTTACATGTCATATATCTGTTTTGGCTATTT-CATGCCTCACCATTG 349
Query 443 AATTCTTCGTTTCAGGCCACTCAACCAACTACGAGTGCTATCTTTCACCCCTGAGTTCAC 502
||| ||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||
Sbjct 350 AATCCTTCGTTTCAGGCCAATCAACCATTTACGAGAGCTATCTTTCAGGCCTGAGTTCAC 409
Query 503 TGAAAGTGTTCCTGCTTGGTTTGCTGATGAG-CT-A-T-T-GCTTGTGGAGTTAGTTTAA 557
| |||| || |||||||| |||||| ||||| || | | | | |||||||||| | |||
Sbjct 410 TTAAAGGGTCCCTGCTTGATTTGCTTATGAGACTGACTATTGTTTGTGGAGTT-GAATAA 468
Query 558 ATATCTGCAAATGTCAAGTCTTCTTAAT 585
|||||||||||||||||||||||||||
Sbjct 469 -TATCTGCAAATGTCAAGTCTTCTTAAT 495
> Ahg338394 jgi|Araly1|338394|fgenesh1_pg.C_scaffold_2000493
Length=303
Score = 231 bits (125), Expect = 9e-60
Identities = 125/125 (100%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1066 AGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTTATCTTCC 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTTATCTTCC 208
Query 1126 TTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 TTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTA 268
Query 1186 TCAAG 1190
|||||
Sbjct 269 TCAAG 273
> Ahg948373 jgi|Araly1|948373|scaffold_800260.1
Length=205
Score = 154 bits (83), Expect = 2e-36
Identities = 83/83 (100%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1109 AGCTCCTGTTATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGT 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 AGCTCCTGTTATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGT 148
Query 1169 CGCAGAAAGGCTCCGTATCAAGG 1191
|||||||||||||||||||||||
Sbjct 149 CGCAGAAAGGCTCCGTATCAAGG 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5