BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07725.1
Length=2472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919501 jgi|Araly1|919501|scaffold_100782.1 2839 0.0
> Ahg919501 jgi|Araly1|919501|scaffold_100782.1
Length=1883
Score = 2839 bits (1537), Expect = 0.0
Identities = 1768/1881 (94%), Gaps = 10/1881 (1%)
Strand=Plus/Plus
Query 156 TTTCTTCAAACCCAAGAAACAATGGTGCTCTTGAAACCCACCACCTTATCAAAATCCTCT 215
|||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||
Sbjct 1 TTTCTTCAAACCCAAGAAACGATGGTGCTCTTGAAACCCTCTGCCTTAACAAAATCCTCT 60
Query 216 AAGGTCGGGCCGCAACAGCAACAGGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 275
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCTCGGGCCGCAACAGCAACAAGGCTTCTCCGAGTCTCTAATCGGCGATAGTGTGGAG 120
Query 276 GCAGCTGACGCCTTCATATGCCAATGGGTTACTCCACACCTCTGCGACTCTTCTTCTTCT 335
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 121 GCAGCTGACGCGTTCATATGCCAATGGGTTACTCCACACCTTTACGACTCTTCTTCTTCT 180
Query 336 TCATGCAGCCTCTCTTCCCTCTTCTCCGCTCAAAACCGCCTAGAAGGCAGACGCTTCCTC 395
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCATGCAGCCTCTCTTCCCTCTTCTCCGCACAAAACCGCCTAGAAGGCAGACGCTTCCTC 240
Query 396 GAGGTTCTCGGCAAGTTACAATACGCCATTCAGAGCACCGTTGCTATGAATCCGGACTCC 455
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 241 GAGGTTCTCGGCAGGTTACAATACACCATTCAGAGTACCGTTGCTATGAATCCGGACTCC 300
Query 456 GCTAAGCTTGCTAAAGGACAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 515
||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTAAACTCGCTCAAGGGCAGGATTTGATGCGGAAAGCTATGAAGCATTTGGAGAAGGAG 360
Query 516 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTTACCGGGTTTTGAAATCGAATCGCCGCTTTCTGAGTCCAGAATCCGTCTCTGGTTGG 420
Query 576 TCTTCTGAATCCAACATACCTTCGAGATCAAGTGGAACCGCTTCGGATTCTTCATCAGAT 635
|| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 TCATCTGAATCCAACACACCTTCGAGATCAAGTGGAACCGCTTCTGATTCTTCATCAGAT 480
Query 636 GGAGAGCTTTACTCTGAATCCTCATCGGAATTAGGTAAAGACATAGGAGGAGGAGGGAAT 695
||||||||| | || ||||| ||||||||||||||||| |||| | ||||||| |||
Sbjct 481 GGAGAGCTTGATTCCGAATCTTCATCGGAATTAGGTAACGACA--G-AGGAGGA---AAT 534
Query 696 TCTGATGCTATTGTTGATTTGAAGATGATAGCAAATTGCATGATCTCCTCTGGTTACGAG 755
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 TCTGAAGCTATTGTGGATTTGAAGATGATAGCAAATTGCATGATCTCATCTGGTTACGAG 594
Query 756 AAGGATTGTGTTAAAATCTACAAGAAGTTTCGCAAAAAGATCATCGTCGACACATTGTCT 815
||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||
Sbjct 595 AAGGATTGTGTTAAAATATACAAGAAGTTTCGAAAAAAGATCATCGTCGACGCACTGTCT 654
Query 816 CATCTAGGGTTCGAGAAGCTAACCTCTACACAGATGCAGAAACTGGAATGGGAGATTCTG 875
|| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 655 CAGCTAGGGCTCGAGAAGCTAACCTCTACGCAGATGCAGAAACTGGAATGGGAGATTCTG 714
Query 876 GAGAAGAAGATCAAAATATGGGTGATTGTTGCGAGAGTAGCAATCACCACTCTGTTCAAC 935
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 715 GAGAAGAAGATCAAAATATGGGTGAGGGTTGCGAGAGTAGCAATCAACACTCTGTTCAAC 774
Query 936 GGAGAACGAATCCTTTCCGATCACATTTTCTCCTCCTCCGTCGCTGAATCTTGCTTCGTT 995
|| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 775 GGCGAACGTATCCTTTCCGATCACATTTTCTCCTCCTCCGCCGCTGAATCTTGCTTCGTG 834
Query 996 GACATAACGCTACAGAGCGCGTTAAACCTCTTCATCTTCTCACTAACCGTAGCGAAATCC 1055
|| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 835 GAGATTACGCTACAGAGCGCGTTAAACCTCTTCATCTTCTCACTAACAGTAGCAAAATCC 894
Query 1056 AGAAAAACTGCAGAGAAGATCTTCCCTACGCTTGACGTTTACCAGACGATCTTGCAACTG 1115
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 895 AGAAAAACTGCAGAGAAAATCTTCCCTACGCTTGACGTTTACCAGACAATCTTGCATCTG 954
Query 1116 ACTCCCAAAATCGATCAGATTTTTAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCG 1175
| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 955 ATTCCCAAAATCGATCAGATCTTCAGCTACGATTCAACCGCTGCCGTTAGATTACAGGCG 1014
Query 1176 AATGAATCTCTAGAGAAGCTATCGGAATCGGTGAATGCAATGATGACGGAGTTTCAATCG 1235
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 AATGAATCTCTAGAGAAACTATCGGAATCGGTGAATGCGATGATGACGGAGTTTCAATCG 1074
Query 1236 TCGATTACGAAGGAATCGTCGAAATCGGCGATTTCTGGCGGCGGAGTTCATCAGCTCACG 1295
||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1075 TCGATTACGAAAGAATCGTCGAAATCGGCGATATCTGGTGGCGGAGTTCACCAGCTCACG 1134
Query 1296 AGGTATGTGATGAACTTCATCGTCTTCCTCGCAGACTACAGCGATTCTCTCGCCACCATT 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1135 AGGTATGTGATGAACTTCATCGTCTTCCTCGCAGACTACAGCGATTCTCTCGCTACAATT 1194
Query 1356 CTCAAGGAGTCATCGTTACCTTTACCGGAGGATTACTTCAGTAGCAGCGGCGAAGAGAAT 1415
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1195 CTCAAGGAGTCATCGTTACCTTTACCAGAGGATTACTTCAGCAGCAGCGGCGAAGAAAAT 1254
Query 1416 CCAGGATCCGGTGATCGTTCTCCGATGGCGGCGAGACTCGCGTGGTTGATTCTCGTCTTG 1475
||||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1255 CCAGGATCCGGTGGTCGGTCTCCGATGGCGGCGAGACTCGCGTGGTTGATACTGGTCTTG 1314
Query 1476 CTCTGTAAAATCGACGCCAAATCTCGGCTCTACAACGACTCGGCTCTATCGTATCTCTTC 1535
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1315 CTCTGCAAAATCGACGCCAAATCTCGGCTCTACAACGACTCTGCTCTCTCGTATCTCTTC 1374
Query 1536 CTAGCGAACAACCTCCATTACGTTGTGACCAAGGTCCGTACATCGAATCTCAGACTCGTA 1595
|| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1375 CTCGCCAACAACCTCCATTACGTTGTGACCAAGGTCCGTACATCGAACCTCAGAGTCGTA 1434
Query 1596 CTCGGAGACGATTGGGTAGCGAATCACGAGGTTAAAGTGAATCAATACCTCGAGAAATAC 1655
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1435 CTCGGAGACGATTGGGTAGCGAATCACGAGGTTAAAGTGAGTCAGTACCTCGAGAAATAC 1494
Query 1656 GAAAAAATGGCCTGGGGGGATGTGAT-AGCGTCGCTCCCCGGTGATTCAACGGCGGGGAC 1714
|| |||||||| ||||| || ||||| | ||||| ||||| | ||||||||||||| |||
Sbjct 1495 GAGAAAATGGCGTGGGGAGACGTGATTA-CGTCGATCCCCAGAGATTCAACGGCGGAGAC 1553
Query 1715 GGAG-GCGGAGGAGTCTCTGAGACGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGC 1773
|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GGAGAGAG-AGGAGTCTCTGAGACGGTTCAACGAGGCGTTCGAAGAGGCTTACAAGAAGC 1612
Query 1774 ACAAGACATGGGTCGTACCCGACCCGAACCTGAGAGACGAGATCCAAGCGTCCATAGCGA 1833
||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||
Sbjct 1613 ACAAGACTTGGGTCGTACCCGACCCGAACCTGAGAGGCGAGATCCAAGCCTCCGTAGCGA 1672
Query 1834 GAAAACTAATGCCCGGGTATACGGGTTTCTATAAGAAACACCCGGTCGGGTCATGCAATA 1893
|||| || |||||||||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 1673 GAAAGCTCATGCCCGGGTATACGGGTTTCTATAAGAAATACCCGGTCGGGTCATGTGAGA 1732
Query 1894 TTGTCAGATTTACCCCTGAAGATCTAAATAATTACATAACCGACCTATATGTTGGTTTAG 1953
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 1733 TTGTCAGATTTACCCCTGAAGATCTTAATAATTACATAACCGACCTCTATATTGGTTTAG 1792
Query 1954 GAAGATCCGTGCCCGTATCCAAAACTAAGAAGTATATGGTTAGCCCAAGCCATACGACGG 2013
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1793 AAAGATCCGTGCCCGTATCCAAAACTAAGAAGTATATGGTTAGCCAAAGCCATGCGACGG 1852
Query 2014 ATTTGAAGTAATAGCTCCATG 2034
||||||||||||||||| |||
Sbjct 1853 ATTTGAAGTAATAGCTCTATG 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93168739270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5