BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07740.1
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470804 jgi|Araly1|470804|fgenesh2_kg.1__758__AT1G07740.1 3890 0.0
> Ahg470804 jgi|Araly1|470804|fgenesh2_kg.1__758__AT1G07740.1
Length=2579
Score = 3890 bits (2106), Expect = 0.0
Identities = 2425/2582 (94%), Gaps = 9/2582 (0%)
Strand=Plus/Plus
Query 1 GAAGAGAATCCGATGCGTAGAAGACTATCTTCCGTGCTAATCAACAATCAGTGCATCGCG 60
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 GAAGAGAACCCGATGCGTAGAAGACTATCTTCCGTTCTAATCAACAATCACTGCATCGCG 60
Query 61 TCCCAACGCCATTACCACACATCTCGACCTGAGAAACCCACAAAGAAAGCCAGCAGCCAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCCCAACGCCATTACCACACATCTCGACCTGAGAAACCCACAAAGAAAGCCACCAGCCAT 120
Query 121 GAACCAACTCACAAATTCACCAGGAAGCCATGGGAGGAAGTGCCATTTCTCACCGATCTC 180
|||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 121 GAACCAACACACAAGTTCACCAGGAAGCCATGGGAGGAGGTTCCATTTCTCACCGATCTC 180
Query 181 AAAGAAATCGAAGACCCAGAGGAAGCTCTTTCTCTCTTCCACCAATACCAGGAAATGGGT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAGAAATTGAAGACCCAGAGGAAGCTCTTTCTCTCTTCCACCAATACCAGGAAATGGGT 240
Query 241 TTCCGACACGACTACCCATCTTACTCTTCTCTCATCTACAAGCTTGCAAAGTCCCGTAAC 300
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTCCGACACGACTACCCGTCTTACTCTTCTCTCATCTACAAGCTAGCAAAGTCCCGTAAC 300
Query 301 TTCGACGCCGTCGACCAAATTCTCCGCCTTGTTCGCTATCGAAACGTCCGGTGCAGAGAA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCGACGCTGTCGACCAAATTCTCCGCCTTGTTCGCTATCGAAACGTCCGGTGCAGAGAA 360
Query 361 TCCCTCTTCATGGGATTGATTCAGCATTACGGGAAAGCCGGTTCGGTCGACAAAGCCATC 420
||||| ||||||| |||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 361 TCCCTTTTCATGGCTTTGATTCAGCATTACGGGAAAGCCGGTTCGGTGGATAAAGCCGTC 420
Query 421 GATGTTTTCCACAAAATCACCTCCTTTGATTGTGTTCGCACGATTCAGTCTCTCAACACT 480
||||||||||||||||| || ||||||||||||||||| ||||||| |||||| ||||||
Sbjct 421 GATGTTTTCCACAAAATGACATCCTTTGATTGTGTTCGTACGATTCTGTCTCTGAACACT 480
Query 481 CTCATCAACGTTCTGGTCGATAACGGCGAGTTGGAAAAGGCCAAAAGCTTTTTCGACGGG 540
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 CTCATCAACGTTCTGGTCGATAACGGCGAGTTGGAAAAGGCAAAAAGCTTTTTCGACGGA 540
Query 541 GCAAAGGATATGCGTTTGCGTCCCAATTCGGTGTCTTTCAATATTTTGATCAAAGGATTT 600
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 541 GCAAAGGATATGCGTTTGCGTCCCAATTCGGTCTCTTTCAATATATTGATCAAAGGGTTT 600
Query 601 CTTGATAAATGCGATTGGGAAGCTGCATGTAAGGTGTTCGACGAAATGCTTGAGATGGAG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTGATAAATGCGATTGGGAAGCTGCATGTAAGGTGTTCGACGAAATGCTTGAGATGGAA 660
Query 661 GTGCAACCGAGTGTTGTGACATACAATAGCCTGATTGGTTTCTTATGCCGAAATGACGAT 720
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 661 GTGCAACCGAGTGTTGTGACATACAATAGCCTGATTGGATTCTTATGCCGAAATAACGAT 720
Query 721 ATGGGTAAGGCGAAGAGCTTGCTTGAAGATATGATTAAGAAAAGAATACGTCCGAATGCT 780
||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 721 ATGGGTAAGGCAAAGAGCTTGCTTGAAGATATGATTAAGAAAAGAATACGCCCCAATGCT 780
Query 781 GTGACATTTGGGTTGTTAATGAAAGGTTTATGTTGTAAGGGAGAGTACAATGAAGCAAAG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GTGACATTTGGGTTGTTAATGAAAGGTTTATGTTGTAACGGAGAGTACAATGAAGCAAAG 840
Query 841 AAGTTGATGTTCGATATGGAGTATCGTGGGTGTAAACCGGGTCTCGTTAACTACGGAATT 900
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 841 AAGTTGATGTTTGATATGGAGTATCGTGGGTGTAAACCGGGTCTCGTTAACTACGGGGTT 900
Query 901 TTGATGAGTGATCTTGGGAAGAGAGGGAGAATTGATGAGGCAAAGCTTCTACTCGGCGAG 960
|||||||||||||| || |||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 901 TTGATGAGTGATCTCGGAAAGAGAGGGAAAATCGATGAGGCAAAGATTCTACTCGGCGAG 960
Query 961 ATGAAGAAAAGACGGATAAAACCAGATGTTGTGATCTATAACATTCTGGTAAACCATCTT 1020
||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 961 ATGAAGAAAAGACGGATCAAACCAGATTTTGTCATCTATAATATTCTGGTAAACCATCTT 1020
Query 1021 TGCACTGAGTGTAGAGTCCCTGAGGCTTATAGAGTGCTGACGGAAATGCAGATGAAAGGG 1080
||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1021 TGCACTGAGGGTAGAGTCCCCGAGGCTTATAGAACGCTGACGGAAATGCAGATGAAAGGT 1080
Query 1081 TGTAAACCAAATGCAGCTACATACCGTATGATGATTGATGGGTTTTGTCGTATCGAGGAT 1140
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||
Sbjct 1081 TGTAAACCAAATGCAGCTACATATCGTATGATGGTTGATGGGTTTTGTCGTATTGGGGAT 1140
Query 1141 TTTGATTCAGGGTTGAATGTTTTGAATGCAATGCTTGCAAGCAGACACTGTCCCACACCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1141 TTTGATTCAGGGTTGAATGTTTTGAATGCAATGCTTGCAAGCAGACACTCTCCCACACCT 1200
Query 1201 GCAACGTTTGTATGTATGGTTGCTGGGCTGATTAAAGGCGGTAACTTGGACCATGCTTGC 1260
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 GCAACGTTTGTACATATGGTTGCTGGGCTGATAAAAGGCGGTAACTTGGACCATGCTTGC 1260
Query 1261 TTTGTGTTAGAGGTGATGGGAAAGAAAAACTTAAGTTTTGGGTCTGGTGCTTGGCAAAAT 1320
|||||||||||||||||||| |||||||| ||||| ||||| | | |||||||||| |||
Sbjct 1261 TTTGTGTTAGAGGTGATGGGGAAGAAAAATTTAAGCTTTGGATATAGTGCTTGGCATAAT 1320
Query 1321 CTACTTTCTGATCTCTGCATCAAGGATGGAGGAG-TATATTGTGAGGCTTTGTCAGAAGT 1379
||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1321 CTACTTTGTGATCTCTGCATCAAGGATGGAGGAGCT-TATTGTGAGGCTTTGTCAGAAGT 1379
Query 1380 AATTTCCATCTAAGCAATGAC-CTTTTTAAAGGCTGCAAAGTACTCTTCTTCCTGATTTT 1438
||||||| ||||||| | | | | | |||| |||||||||| | |||||||| ||
Sbjct 1380 TATTTCCACCTAAGCATTAAATCAATGGCA-GGCTACAAAGTACTCGTATTCCTGATATT 1438
Query 1439 AGCTCTCGCCATTACTTTTGTCTCAGCTGCTCGGCTTCTTGATGAAGAAGAAGATATTGG 1498
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1439 AGCTCTGGCCATTACTTTTGTCTCAGCTGGTCGGCTTCTTGATGAAGAAGAAGATATTGG 1498
Query 1499 GTTGGTCCCTTTGCCTACCACGAGTCCTGGTCCTTTACCAACAGTTGGTTTAGGCCCCTT 1558
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1499 GTTGGTCCCTTTGCCTACCACAAGTCCTGGTCCTTTACCAACGGTTGGTTTAGGCCCCTT 1558
Query 1559 TCCCACTGCTAATTCAGGCCCTGCAACTGGTATCGCTTCAGGTACAGGTTCAGCCTCAGG 1618
|||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1559 TCCCTCTGCTAATTCAGGTTCTGCAACTGGTATCGCTTCGGGTACAGGTCCAGCCTCAGG 1618
Query 1619 GGGTTTAGGTTCCTTGGGTACCAATACTGGCCCCGGGCCTCTATCGACCACTGGTTCTAG 1678
|||| |||| ||||| ||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 1619 TGGTTCAGGTCCCTTGACTACCAATACTGGCCCCGGGCCTCTACCAACCACTGCTTCTAG 1678
Query 1679 T-CTTTTACCAGTTGCTAGTTCGGGTACCTTGCCTGTTACTGGCCCCGGTCCTCTACCAA 1737
| |||| ||| ||||||||||| ||| |||||||| || |||| | |||||||||||||
Sbjct 1679 TGCTTT-ACCGGTTGCTAGTTCTGGTCCCTTGCCTACTATTGGCTCTGGTCCTCTACCAA 1737
Query 1738 CCA--G-TTCTGGTCTCTTACCGGGTGCTAGTTCGGGTAACTTGCCTGGTTCAGGTTCAG 1794
||| | ||| |||| ||||| ||||||||||||||||| ||||||| || |||||||||
Sbjct 1738 CCACTGGTTCAGGTCCCTTACTGGGTGCTAGTTCGGGTATCTTGCCTAGTGCAGGTTCAG 1797
Query 1795 GGCCTTTGCCTACTGTTGGTTCAGGTGCTGCAGCTACGGGTCTGGGCGCAGGTGCAGGGT 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1798 GGCCTTTGCCTACTGTTGGTTCAGGTGCTGCAGCTACGGGTCTGGGCGCAGGTGCCGGGT 1857
Query 1855 CAGTGATTGGTGGTTCAGTTCCTGACAACACTTTGGTTTTCTTCATGCACGATATACTCG 1914
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1858 CAGTGATTGGTGGTTCAGTTCCCGACAACACTTTGGTTTTCTTCATGCATGATATACTCG 1917
Query 1915 GTGGCTCAAACCCGACAGCGAGGGCTGTGACTGGAGTCGTCGCAAACGCAGCCCTCAGTG 1974
| |||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1918 GCGGCTCAAATCCGACAGCCAGGGCTGTGACTGGCGTCGTTGCAAACGCAGCCCTCAGTG 1977
Query 1975 GCCAAATTCCATTCGCTAAGCCCAATGGTGCAAACCTCCCTGTTAGTAACGGCGTTCCAT 2034
|||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||
Sbjct 1978 GCCAAATTCCATTCGCCAAGCCCAACGGCGCAAACCTTCCTGTTAGTAACGGTGTTCCAA 2037
Query 2035 CAGACAATAACAACAATGGAATCCTGAACAATAACAACGTCCCACTTCTCGTCGGGCTTG 2094
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 2038 CAGACAATAACAACAATGGAATCCTGAACAACAACAACGTCCCGCTCCTCGTCGGGCTTG 2097
Query 2095 GCGGAACCACTTCCAACATTCTACAGAACAATGGAAACAACATGTTGAACGGTCTTCCCG 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2098 GCGGAACCACTTCCAACATTCTACAGAACAATGGAAACAACATGTTGAACGGTCTCCCCG 2157
Query 2155 TGGCTAACGGCGGCCAGCTCCCATCGGGTTCGTCTCTTCAGATGCTCATGTTTGGGACAT 2214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 TGGCTAACGGCGGCCAGCTCCCATCGGGTTCGTCTCTTCAGATGCTCATGTTTGGGACAC 2217
Query 2215 TGACGGTGATGGACAACGAACTAACCGAAGGACACGAACTCGGGTCTGGTCTGCTGGGTA 2274
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2218 TGACGGTGATGGACAACGAACTAACCGAAGGGCACGAACTCGGGTCCGGTCTGCTGGGTA 2277
Query 2275 AAGCCCAAGGCTTCTACGTGGCAAGTGCCCTTGATGGGACCAGCCAGACTATGGCTTTCA 2334
|||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 2278 AAGCCCAAGGCTTCTATGTGGCAAGTGCCATTGATGGAACCAGCCAGACTATGGCTTTCA 2337
Query 2335 CGGCTATGTTTGAGAGCGGTGGATATGAAGATAGCATCAGTTTCTTCGGTGTGCATAGAA 2394
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2338 CGGCTATGTTTGAGAGTGGTGGATATGAAGATAGCATCAGTTTCTTCGGTGTACATAGAA 2397
Query 2395 CAGCTGCATCGGAATCTCATCTTGGGGTAATGGGCGGTACTGGTAAGTATGTGAATGCGA 2454
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 2398 CAGCTGCATCGGAATCTCATCTTGGGGTCATGGGTGGGACTGGTAAGTATGTGAATGCGA 2457
Query 2455 GAGGCTTCGCAATTGTCAAGACTTTTACGGGTTCCTCCGGGACCCAGCAGCAGCAGCCGC 2514
|||||| ||| || || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2458 GAGGCTACGCCATCGTTAAGACTTTTACGGGTTCCTCCGGGACCCAACAGCAGCAGCCGC 2517
Query 2515 ACCAGTTCACAGATGGGCTCGAGACTGTTCTGGAGTGCACCGTTTATCTTTCTTACTAGT 2574
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 ACCAGTTCACAGATGGGCTTGAGACTGTTCTGGAGTGCACCGTTTATCTTTCTTACTAGT 2577
Query 2575 TT 2576
||
Sbjct 2578 TT 2579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100253524840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5