BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07747.1
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919509 jgi|Araly1|919509|scaffold_100790.1 339 9e-93
> Ahg919509 jgi|Araly1|919509|scaffold_100790.1
Length=328
Score = 339 bits (183), Expect = 9e-93
Identities = 256/291 (88%), Gaps = 6/291 (2%)
Strand=Plus/Plus
Query 1 ATGAAGATGAAGTTCACTACATTAGTTTTCGTTGCGTTTGTTCTCTCGTCAATGGCTCCG 60
|||||||||||||||||||||||||||||| | ||||||||||| || || | |||||
Sbjct 21 ATGAAGATGAAGTTCACTACATTAGTTTTCATCGCGTTTGTTCTGTCCTCCCTAACTCCG 80
Query 61 ACCAAAGCAGAGGAGAAAGCGGCATGCGTCGTGACAGATCTCAAAGCATGCCTACCAGAT 120
|| |||||||||||||||| | |||| |||||||| ||||| | ||||||||| ||||
Sbjct 81 ACTAAAGCAGAGGAGAAAGAGCCATGTGTCGTGACTGATCTTATAGCATGCCTGCCAG-C 139
Query 121 A-TA-ATAGGCGAAACCCCACCATCGACAAAATGTTGCACAAAATTGAAAGATAAA-AAG 177
| || | ||||| || |||||| |||||| |||||||||||||||||||||| ||| ||
Sbjct 140 AGTACA-AGGCGGAAGCCCACCGTCGACAGAATGTTGCACAAAATTGAAAGA-AAAGCAG 197
Query 178 TCGTGTTTTTGTGAGTACTTGAAAAACCCATTGATTGCTCCATATATGACATCTGCTAAA 237
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 198 TCGTGTTTTTGTGAGTACTGGAAAAGCCCATTGGTTGCTCCATATATGACATCTGCTAAA 257
Query 238 CAAGTTTTAGAAGCGTGTGGTGTACCTGTTCCTGTTTGTCAAAGGTTTTAA 288
|||||||||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 258 CAAGTTTTAGAAGCTTGTGGAGTACCTGTTCCCGTTTGTCAAAGTTTTTAA 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10073075496
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5