BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07747.1 Length=288 Score E Sequences producing significant alignments: (Bits) Value Ahg919509 jgi|Araly1|919509|scaffold_100790.1 339 9e-93 > Ahg919509 jgi|Araly1|919509|scaffold_100790.1 Length=328 Score = 339 bits (183), Expect = 9e-93 Identities = 256/291 (88%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 1 ATGAAGATGAAGTTCACTACATTAGTTTTCGTTGCGTTTGTTCTCTCGTCAATGGCTCCG 60 |||||||||||||||||||||||||||||| | ||||||||||| || || | ||||| Sbjct 21 ATGAAGATGAAGTTCACTACATTAGTTTTCATCGCGTTTGTTCTGTCCTCCCTAACTCCG 80 Query 61 ACCAAAGCAGAGGAGAAAGCGGCATGCGTCGTGACAGATCTCAAAGCATGCCTACCAGAT 120 || |||||||||||||||| | |||| |||||||| ||||| | ||||||||| |||| Sbjct 81 ACTAAAGCAGAGGAGAAAGAGCCATGTGTCGTGACTGATCTTATAGCATGCCTGCCAG-C 139 Query 121 A-TA-ATAGGCGAAACCCCACCATCGACAAAATGTTGCACAAAATTGAAAGATAAA-AAG 177 | || | ||||| || |||||| |||||| |||||||||||||||||||||| ||| || Sbjct 140 AGTACA-AGGCGGAAGCCCACCGTCGACAGAATGTTGCACAAAATTGAAAGA-AAAGCAG 197 Query 178 TCGTGTTTTTGTGAGTACTTGAAAAACCCATTGATTGCTCCATATATGACATCTGCTAAA 237 ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 198 TCGTGTTTTTGTGAGTACTGGAAAAGCCCATTGGTTGCTCCATATATGACATCTGCTAAA 257 Query 238 CAAGTTTTAGAAGCGTGTGGTGTACCTGTTCCTGTTTGTCAAAGGTTTTAA 288 |||||||||||||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 258 CAAGTTTTAGAAGCTTGTGGAGTACCTGTTCCCGTTTGTCAAAGTTTTTAA 308 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10073075496 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5