BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07750.1
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470808 jgi|Araly1|470808|fgenesh2_kg.1__762__AT1G07750.1 1881 0.0
> Ahg470808 jgi|Araly1|470808|fgenesh2_kg.1__762__AT1G07750.1
Length=1291
Score = 1881 bits (1018), Expect = 0.0
Identities = 1211/1302 (93%), Gaps = 22/1302 (2%)
Strand=Plus/Plus
Query 41 aaatcttttcttctttactctttttcATCGTCGAGAAAAAATGGAGTTGGATCTTACACC 100
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1 AAACCTTTTGTTCTTTACTCTTTTCCATCGTCGAGAAAAAATGGAGTTGGATCTTTCACC 60
Query 101 TAAGTTGCCCAAGAAGGTTTACGGAGGAGATGGTGGATCTTACTCTGCCTGGTGCCCAGA 160
||| |||| || ||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 61 GAAGCTGCCGAAAAAGGTTTACGGAGGAGATGGTGGATCTTACTTTGCGTGGTGCCCAGA 120
Query 161 GGAGTTGCCGATGCTCAAACAGGGTAACATTGGAGCCGCTAAGCTTGCTCTTGAGAAGAA 220
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 121 AGAGTTGCCGATGCTTAAACATGGTAACATTGGAGCCGCTAAGCTTGCTCTTGAGAAGCA 180
Query 221 TGGCTTCGCTGTCCCTCGTTACTCTGATTCCTCTAAGGTCGCTTATGTTCTTCAAGGATC 280
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCTTCGCTATCCCTCGTTACTCTGATTCCTCTAAGGTCGCTTATGTTCTTCAAGGATC 240
Query 281 TGGAACTGCTGGAATTGTTCTCCCAGAGAAGGAGGAGAAGGTGATCGCAATCAAGCAAGG 340
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 TGGAACTGCTGGAATTGTTCTCCCAGAGCAGGAGGAGAAGGTGATCGCAATCAAGCAAGG 300
Query 341 TGATTCGATTGCTCTTCCCTTTGGTGTGGTCACATGGTGGTTCAACAACGAGGATCCTGA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TGATTCGATTGCTCTTCCCTTTGGTGTGGTCACATGGTGGTTCAACAACGAGGATGCTGA 360
Query 401 GCTTGTTATCCTCTTCCTTGGTGAAACCCACAAGGGTCACAAAGCAGGGCAGTTCACTGA 460
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 GCTTGTTATCCTCTTCCTTGGTGAAACCCACAAGGGTCACAAAGCAGGACAGTTCACTGA 420
Query 461 GTTCTATCTTACTGGCACAAACGGTATCTTCACTGGTTTCTCCACTGAGTTTGTTGGCAG 520
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 GTTCTATCTCACTGGCTCAAACGGTATCTTCACTGGTTTCTCCACTGAGTTTGTAAGCAG 480
Query 521 AGCCTGGGACCTTGATGAGAACACCGTGAAGAAACTTGTTGGTTCTCAAACCGGTAATGG 580
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 AGCCTGGGATCTTGATGAGAACACCGTGAAGAAACTCGTTGGTTCTCAAACCGGTAATGG 540
Query 581 CATTGTGAAGCTTGATGCGGGCTTTAAGATGCCACAGCCCAAGGAGGAGAACCGTGCTGG 640
|||||||||||||||||| || | |||||||||||||||||| ||||| |||||| |||
Sbjct 541 TATTGTGAAGCTTGATGCGAGCGTCAAGATGCCACAGCCCAAGAAGGAGCACCGTGATGG 600
Query 641 GTTTGTCTTGAACTGTTTGGAGGCTCCTCTTGATGTAGACATCAAGGATGGAGGCAGGGT 700
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 601 GTTTGTCTTGAACTGTTTGGAGGCTCCTCTTGATGTTGACATCAAGGATGGAGGCAGAGT 660
Query 701 CGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGGAGAGGTTGGCTTTGGAGCTGATCT 760
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGGAGAGGTTGGGTTTGGAGCTGATCT 720
Query 761 TGTTCGGATCGATGCACACTCCATGTGTTCGCCTGGTTTCTCTTGTGACTCTGCTCTTCA 820
||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTGAGGATTGATGGACATTCCATGTGTTCGCCTGGTTTCTCTTGTGACTCTGCTCTTCA 780
Query 821 GGTGACTTACATTGTGGGTGGAAGTGGAAGAGTCCAGGTGGTTGGTGG-TGATGGGAAAA 879
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 781 GGTGACTTACATTGTGGGTGGAAGTGGAAGAGTCCAGGTGGTTGG-GGCTGATGGGAAAA 839
Query 880 GAGTTCTTGAGACCCATATCAAAGCTGGTTCTCTCTTCATTGTTCCAAGGTTCTTTGTGG 939
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGTTCTTGAGACTCATATCAAAGCTGGTTCTCTCTTCATTGTTCCAAGGTTCTTTGTGG 899
Query 940 TTTCTAAGATTGCTGATGCTGATGGCATGTCTTGGTTCTCCATTGTCACCACTCCTGATC 999
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGTCTAAGATTGCTGATTCTGATGGCATGTCTTGGTTCTCCATTGTCACCACTCCTGATC 959
Query 1000 CGATCTTCACACATTTGGCCGGGAATACATCGGTGTGGAAGTCTTTGTCCCCTGAGGTTT 1059
| |||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||
Sbjct 960 CAATCTTCACACATTTGGCCGGAAAGACATCGGTGTGGAAGGCTTTGTCACCTGAGGTTT 1019
Query 1060 TGCAGGCAGCGTTTAAGGTGGCTCCGGAGGTGGAGAAGTCCTTCCGATCCACGAGGACTT 1119
||||||| ||||||||||| | |||||| |||||||||||||||||||| | ||||||||
Sbjct 1020 TGCAGGCGGCGTTTAAGGTTGATCCGGATGTGGAGAAGTCCTTCCGATCAAAGAGGACTT 1079
Query 1120 CAT-CAGCCATTTTCTTCCCTCCTTCCAACTGAAGAAGGAGAAG-AATGAGAACAAGAAC 1177
|| | ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1080 CAGAC-GCCATTTTCTTCCCTCCATCCAACTGAAGAAGTAGAAGTAATGAGAACAAGAAC 1138
Query 1178 CAGcttttatcttttatcgttt------gttgctttccctcagagatttttgagggtttt 1231
||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1139 CAGCTTTCATCTTTTATCTTTTATCTTTGTTGCTTTCCCTCAGAGATTTTTGAGGGTTT- 1197
Query 1232 tacttttcttgTGATTCAAGGAAGT-TTCTTAGTCTAGT-TGTTTAATTCTCTTCCTGCC 1289
||||||||||||||||||||| | ||||||||||||| | |||| | | | | |
Sbjct 1198 --CTTTTCTTGTGATTCAAGGAA-TATTCTTAGTCTAGTGTTTTTAGTGGT-T-C--GA- 1249
Query 1290 TTTTCCCCCTGGACCGGTTCTTGTTCTCGTTGTTTTAAAATA 1331
|| || ||||||||||||||||||||| ||||| ||||||
Sbjct 1250 TTCTCTTCCTGGACCGGTTCTTGTTCTCTTTGTTAAAAAATA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5