BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07770.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470810 jgi|Araly1|470810|fgenesh2_kg.1__764__AT1G07770.2 1003 0.0
Ahg891428 jgi|Araly1|891428|Al_scaffold_0007_3414 472 2e-132
> Ahg470810 jgi|Araly1|470810|fgenesh2_kg.1__764__AT1G07770.2
Length=632
Score = 1003 bits (543), Expect = 0.0
Identities = 604/633 (95%), Gaps = 5/633 (1%)
Strand=Plus/Plus
Query 1 ATAAAAAGCGATAAGAAAACCCTAGCTCACCTTCTCTTCTTCCTCTAATTGCTTTTCTCC 60
|||||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 4 ATAAAAGGTGATAAGAAAACCCTAGCACACCTTCTCTTCTTCCTCTATTTGCTTTTCTCC 63
Query 61 GTCACTGAGT-ACCTTGCCTCTCGAGCTCCCAATCTTAAGTAGAGGATTGAGCTTAAGGC 119
|||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 64 GTCACTGAGTGCCCCAGCCTCTCGAGCTCCCAATCTT-A--AGAGGATTGAGCTTAGGGC 120
Query 120 AAGATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAA 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGATGGTGAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAA 180
Query 180 CGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATT 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CGAGGCAAGAGGCAGGTCATGATCAGGCCTTCCTCAAAAGTGATTATCAAGTTTCTGATT 240
Query 240 GTCATGCAGAAGCACGGTTACATTGGTGAGTTTGAGTATGTCGATGACCACAGATCTGGC 299
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 241 GTCATGCAGAAGCACGGTTACATCGGCGAGTTTGAGTATGTCGATGACCACAGATCTGGC 300
Query 300 AAGATCGTCGTTGAATTGAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACGTTTT 359
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGATCGTTGTTGAATTAAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACGTTTT 360
Query 360 GATGTTGGTGTCAAGGAAATTGAAGGTTGGACTGCCCGTTTGCTCCCTTCTAGACAGTTT 419
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GATGTTGGTGTCAAGGAGATTGAAGGTTGGACTGCCCGTTTGCTTCCTTCTAGACAGTTT 420
Query 420 GGTTACATCGTGCTGACTACATCTGCTGGCATTATGGACCATGAAGAAGCTAGAAGGAAG 479
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GGGTACATCGTGCTGACTACGTCTGCTGGCATTATGGACCATGAAGAAGCCAGAAGGAAG 480
Query 480 AATGTTGGAGGCAAGGTTCTCGGCTTCTTCTATTGAAGTTTTATTTTATGGGGAAACAGA 539
||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 481 AATGTAGGAGGCAAGGTTCTCGGCTTCTTCTATTGAAGGTTTATTT-ATGGGGAAAGAGA 539
Query 540 TTTTCATTGAGTTATTTTTAACTTTTGTCCTCCATTTTCTCTGAAACTACCTTTCTCTTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 TTTTCATTGAGTTATTTTTAACTTTTGTCCTCCATTTTCTCTGAAACTACCTTTGTCTTT 599
Query 600 CTTTCGAATTTTGTGATAACTTTGATGGATAGT 632
|||||||||||||||| ||||||||||||||||
Sbjct 600 CTTTCGAATTTTGTGACAACTTTGATGGATAGT 632
> Ahg891428 jgi|Araly1|891428|Al_scaffold_0007_3414
Length=294
Score = 472 bits (255), Expect = 2e-132
Identities = 279/291 (96%), Gaps = 0/291 (0%)
Strand=Plus/Plus
Query 123 ATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGA 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGA 60
Query 183 GGCAAGAGGCAGGTCATGATCAGGCCTTCCTCCAAAGTGATTATCAAGTTTCTGATTGTC 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGCAAGAGGCAGGTCATGATCAGGCCTTCCTCAAAAGTGATTATCAAGTTTCTGATTGTC 120
Query 243 ATGCAGAAGCACGGTTACATTGGTGAGTTTGAGTATGTCGATGACCACAGATCTGGCAAG 302
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGCAGAAGCACGGTTACATCGGCGAGTTTGAGTATGTCGATGACCACAGATCTGGCAAG 180
Query 303 ATCGTCGTTGAATTGAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACGTTTTGAT 362
||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ATCGTTGTTGAGTTAAATGGAAGGTTGAACAAGTGTGGTGTCATCAGCCCACGTTTTGAT 240
Query 363 GTTGGTGTCAAGGAAATTGAAGGTTGGACTGCCCGTTTGCTCCCTTCTAGA 413
|||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 241 GTTGGTGTCAAGGAGATTGAAGGTTGGACTGCCCGTTTACTGCCTTCTAGA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5