BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07790.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470811 jgi|Araly1|470811|fgenesh2_kg.1__765__AT1G07790.1 915 0.0
Ahg943771 jgi|Araly1|943771|scaffold_604315.1 409 2e-113
Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1 298 4e-80
Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001 244 5e-64
> Ahg470811 jgi|Araly1|470811|fgenesh2_kg.1__765__AT1G07790.1
Length=666
Score = 915 bits (495), Expect = 0.0
Identities = 628/688 (91%), Gaps = 26/688 (4%)
Strand=Plus/Plus
Query 1 ATCACCATTCACCACTAAACTACTTCAATCAACTTCCTTTTCCCGAGAAAATCAGAAAGA 60
|||||||||||||||| |||||| | |||||||||||||||||||||||||| |||||
Sbjct 1 ATCACCATTCACCACTCAACTAC-T---TCAACTTCCTTTTCCCGAGAAAATCATAAAGA 56
Query 61 AAATTCACGATGGCACCAAGAGCCGAGAAGAAGCCCGCCGAGaaaaaaaCCGCCGCTGAG 120
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 57 AAATTCACTATGGCACCAAGAGCCGAGAAGAAGCCCGCCGAGAAAAAACCCGCGGCTGAG 116
Query 121 AGACCGGTGGAAGAGAACAAGGCTGCTGAAAAGGCTCCGGCGGAGAAGAAACCCAAGGCG 180
| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 117 AAACCGGTGGAAGAGAACAAGGCCGCCGAAAAAGCTCCGGCGGAGAAGAAACCCAAGGCG 176
Query 181 GGGAAGAAATTGCCACC-A--AAGGAAGCCGGTGACAAGAAGAAGAAGCGATCTAAGAAA 237
||||||||||||||||| | ||||| ||||| ||||| ||||||||||| || ||||||
Sbjct 177 GGGAAGAAATTGCCACCGACGAAGGAGGCCGGCGACAAAAAGAAGAAGCGTTCGAAGAAA 236
Query 238 AACGTCGAAACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGATATC 297
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 AACATCGAAACCTACAAGATCTACATCTTCAAGGTGTTGAAGCAGGTTCATCCAGATATC 296
Query 298 GGAATTTCAAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATATTCGAGAAG 357
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 297 GGGATTTCAAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATCTTCGAGAAG 356
Query 358 CTAGCTCAGGAATCTTCGAAACTCGCTAGGTACAACAAGAAGCCGACCATTACATCTCGC 417
|||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct 357 CTAGCTCAGGAATCTTCGAAGCTCGCAAGGTACAACAAGAAGCCGACAATCACATCTCGC 416
Query 418 GAGATCCAGACGGCTGTGAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCT 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 GAGATCCAGACGGCTGTTAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCTGTCTCT 476
Query 478 GAAGGTACCAAGGCGGTTACCAAGTTTACTAGCTCTTGAAGAGACCCGGTTAGGGTTTTT 537
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAAGGTACCAAGGCGGTGACCAAGTTTACTAGCTCTTGAAGAGACCCGGTTAGGGTTTTC 536
Query 538 AGGGATTTCAATTTCGGTTTGGTTTTTAGTACT-TGTAGGAAATTAGATGCATTATTCGC 596
||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||
Sbjct 537 AGGGATTTCAATTTCGGTTTGGTTTTTAGTACTATCTAGGAAATTAGATGC-TT---CG- 591
Query 597 TTAACTTCGTATTTTGTGGCTTTGTAACTCTAGGAAGTAGAGAAGATTGTTCCTTCCTTT 656
| | || | | |||||| ||||| |||||||| ||||| ||||||||||| |||
Sbjct 592 T-A--TT--T-T---GTGGCTCTGTAAA-CTAGGAAGAAGAGATGATTGTTCCTT--TTT 639
Query 657 TATGAATTTCAATGTTGGATTATATATT 684
||||||||||||| || ||||||||||
Sbjct 640 -ATGAATTTCAATGATGAATTATATATT 666
> Ahg943771 jgi|Araly1|943771|scaffold_604315.1
Length=285
Score = 409 bits (221), Expect = 2e-113
Identities = 256/273 (94%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 307 AGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATATTCGAGAAGCTAGCTCAG 366
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 13 AGCAAAGCCATGGGGAATATGAACAGCTTCATCAACGACATCTTCGAGAAGCTAGCTCAG 72
Query 367 GAATCTTCGAAACTCGCTAGGTACAACAAGAAGCCGACCATTACATCTCGCGAGATCCAG 426
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 73 GAATCTTCGAAACTCGCAAGGTACAACAAGAAGCCGACGATTACATCCCGCGAGATCCAG 132
Query 427 ACGGCTGTGAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCTGAAGGTACC 486
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 ACTGCTGTTAGACTAGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCTGAAGGTACA 192
Query 487 AAGGCGGTTACCAAGTTTACTAGCTCTTGAAGAGACCCGGTTAGGGTTTTTAGGGATTTC 546
|||||||| ||||||||||| ||||| ||||||||||||||||||||||| | |||||||
Sbjct 193 AAGGCGGTGACCAAGTTTACCAGCTCCTGAAGAGACCCGGTTAGGGTTTTCATGGATTTC 252
Query 547 AATTTCGGTTTGGTTTTTAGTACT-TGTAGGAA 578
||||||||||||||||||||| || ||||||||
Sbjct 253 AATTTCGGTTTGGTTTTTAGTGCTATGTAGGAA 285
> Ahg496128 jgi|Araly1|496128|fgenesh2_kg.8__1944__AT5G59910.1
Length=698
Score = 298 bits (161), Expect = 4e-80
Identities = 386/489 (79%), Gaps = 37/489 (8%)
Strand=Plus/Plus
Query 70 ATGGCACC-AAGAGCCGAGAAGAAGCCCGCCGAGaaaaaaaCC-GCCGCTGAG-AGACCG 126
||||| || || ||| |||||||||||||| ||| || ||||| ||| | ||| || |||
Sbjct 70 ATGGCGCCGAA-AGCAGAGAAGAAGCCCGCTGAG-AAGAAACCAGCCTCCGAGAAG-CCG 126
Query 127 GTGGAAGAG-AA-C-AAGGCTGCTGA-AAAGGCTCCGGCGGAGAAGAAACCCAAGGCGGG 182
||||| ||| || | || || | || ||| |||||||||||||||||||| ||||| ||
Sbjct 127 GTGGAGGAGAAATCAAAAGC--C-GAGAAA-GCTCCGGCGGAGAAGAAACCAAAGGCCGG 182
Query 183 GAAGAAATTGCCACCAAAGGAAGC-----C----GGTGACAAGAAGAAGAAGCGATCTAA 233
|||||| | | || ||||| || | |||||||||||||| || ||| ||
Sbjct 183 AAAGAAACT--C-CCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAA-AA-AGAT-GAA 236
Query 234 GAA-AA-ACG--TCGAAACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATC 289
||| || | | |||| || |||||||||||||||||||||||||| ||||| |||||||
Sbjct 237 GAAGAAGA-GTATCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATC 295
Query 290 CAGATATCGGAATTTCAAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATAT 349
| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 296 CCGATATCGGAATCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCT 355
Query 350 TCGAGAAGCTAGCTCAGGAATCTTCGAAACTCGCTAGGTACAACAAGAAGCCGACCATTA 409
|||||||||| ||||| || | ||||| || || |||||||| ||||| || || || |
Sbjct 356 TCGAGAAGCTTGCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCA 415
Query 410 CATCTCGCGAGATCCAGACGGCTGTGAGACTCGTCCTCCCCGGTGAACTCGCTAAACACG 469
| || || ||||| ||||| ||||||||| | || || || || || | || || || |
Sbjct 416 CGTCCCGGGAGATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATG 475
Query 470 CCGTCTCTGAAGGTACCAAGGCGGTTACCAAGTTTACTAGCTCTTGAAGAGACCCG-GTT 528
| || ||||| || || |||||||||||||| || || |||||||||| | | | |||
Sbjct 476 CTGTTTCTGAGGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAATA-ATT-GAGTT 533
Query 529 AGGGTTTTT 537
|||||||||
Sbjct 534 AGGGTTTTT 542
> Ahg333229 jgi|Araly1|333229|fgenesh1_pm.C_scaffold_189000001
Length=414
Score = 244 bits (132), Expect = 5e-64
Identities = 301/380 (79%), Gaps = 21/380 (6%)
Strand=Plus/Plus
Query 150 AAAGGCTCCGGCGGAGAAGAAACCCAAGGCGGGGAAGAAATTGCCACCAAAGGAAGC--- 206
||| |||||||||||||||||||| ||||| || |||||| | | || ||||| ||
Sbjct 43 AAA-GCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGAAACT--C-CCGAAGGAGGCTGG 98
Query 207 --C----GGTGACAAGAAGAAGAAGCGATCTAAGAA-AA-ACG--TCGAAACCTACAAGA 256
| |||||||||||||| || ||| ||||| || | | |||| || |||||||
Sbjct 99 TGCTGGAGGTGACAAGAAGAA-AA-AGAT-GAAGAAGAAGA-GTATCGAGACTTACAAGA 154
Query 257 TCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGATATCGGAATTTCAAGCAAAGCCA 316
||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 155 TCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCAAGCAAAGCGA 214
Query 317 TGGGGATTATGAACAGTTTCATCAACGACATATTCGAGAAGCTAGCTCAGGAATCTTCGA 376
|||||||||||||||||||||||||||| || ||||||||||| ||||| || | ||||
Sbjct 215 TGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGGCGTCGA 274
Query 377 AACTCGCTAGGTACAACAAGAAGCCGACCATTACATCTCGCGAGATCCAGACGGCTGTGA 436
| || || |||||||| ||||| || || || || || || ||||| ||||| |||||||
Sbjct 275 AGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAGACTGCTGTGA 334
Query 437 GACTCGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCTGAAGGTACCAAGGCGGTTA 496
|| | || || || || || | || || || || || ||||| || || ||||| || |
Sbjct 335 GATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACTAAGGCCGTCA 394
Query 497 CCAAGTTTACTAGCTCTTGA 516
| || || || |||||||||
Sbjct 395 CGAAATTCACCAGCTCTTGA 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5