BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07795.1 Length=682 Score E Sequences producing significant alignments: (Bits) Value Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1 743 0.0 > Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1 Length=607 Score = 743 bits (402), Expect = 0.0 Identities = 482/519 (93%), Gaps = 11/519 (2%) Strand=Plus/Plus Query 1 ATTTTCATTTCCGTTTCC--A-A-ACAC--ATAAACCGCACCAATCAAACAAGCTCTGGT 54 |||||||||||||||||| | | |||| ||||||||||||||||||||||||| ||| Sbjct 1 ATTTTCATTTCCGTTTCCAAACACACACATATAAACCGCACCAATCAAACAAGCTTTGG- 59 Query 55 TTTTGCTCATCGATCTCACAATCTTTTCGTTTCCTCGCAAACCAACACCTAATTTCTTTT 114 || ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 60 TTCTGCTCATCGATCTCACAATCTTTTCGTTTTCTCGC-AAGCAACACCTAATTTCTTTT 118 Query 115 GATCCACGCTAAAACAATCCCCATTTCTTCTGATCAAGATGTATCACCGTCTTCCATCGC 174 ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||| Sbjct 119 GATCCACGCTAAAACAA-CCCCGTTTCTTCTGATCGAGATGTATCACCGTCTTCCGTCGT 177 Query 175 TAATGGAGCCGTTTCTACGGAGTGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 234 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 178 TAATGGAGCCGTTTCTCCGGAGAGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 237 Query 235 CGTGGACGGTGCTTCTAATGTTCACGGTGGCCGTCGCTTCGTTTGCTCCGGAGATGGCTT 294 |||||||||||||||| ||||| || || || |||||||||||||||||||||||||| | Sbjct 238 CGTGGACGGTGCTTCTCATGTTTACTGTTGCGGTCGCTTCGTTTGCTCCGGAGATGGCGT 297 Query 295 TTGTGTCTACGGTGTCGTCTTCGTGCGGAGGAGGAGATGG-TTTCGTGAAGATTCCGATG 353 ||||||| ||||| |||||||| ||||||||||||||||| ||| ||||||||||||||| Sbjct 298 TTGTGTCGACGGTTTCGTCTTCTTGCGGAGGAGGAGATGGGTTT-GTGAAGATTCCGATG 356 Query 354 GATTTTGCAGGGGAGAGTATATGCGTGCCGTCTAATATGGTGAAGAGATCGCGTTTTGAT 413 || ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| Sbjct 357 GACTTTGCAGGGGAGAGTATATGCGTGCCGGCTAACATGGTGAAGAGATCACGTTTTGAT 416 Query 414 TTGTTTGTGCCTTCGATTTTCGCGGCGGTTATGGTCACTGCTTCGGCTTGTTTGATCCGA 473 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 417 TTGTTTGTGCCTTCTATTTTCGCGGCGGTTATGGTCACGGCTTCGGCTTGTTTGATCCGA 476 Query 474 TCATGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 512 || |||||||||||||||||||||||||||||||||||| Sbjct 477 TCGTGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25046756469 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5