BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07795.1
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1 743 0.0
> Ahg470812 jgi|Araly1|470812|fgenesh2_kg.1__766__AT1G07795.1
Length=607
Score = 743 bits (402), Expect = 0.0
Identities = 482/519 (93%), Gaps = 11/519 (2%)
Strand=Plus/Plus
Query 1 ATTTTCATTTCCGTTTCC--A-A-ACAC--ATAAACCGCACCAATCAAACAAGCTCTGGT 54
|||||||||||||||||| | | |||| ||||||||||||||||||||||||| |||
Sbjct 1 ATTTTCATTTCCGTTTCCAAACACACACATATAAACCGCACCAATCAAACAAGCTTTGG- 59
Query 55 TTTTGCTCATCGATCTCACAATCTTTTCGTTTCCTCGCAAACCAACACCTAATTTCTTTT 114
|| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 60 TTCTGCTCATCGATCTCACAATCTTTTCGTTTTCTCGC-AAGCAACACCTAATTTCTTTT 118
Query 115 GATCCACGCTAAAACAATCCCCATTTCTTCTGATCAAGATGTATCACCGTCTTCCATCGC 174
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||
Sbjct 119 GATCCACGCTAAAACAA-CCCCGTTTCTTCTGATCGAGATGTATCACCGTCTTCCGTCGT 177
Query 175 TAATGGAGCCGTTTCTACGGAGTGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 234
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 TAATGGAGCCGTTTCTCCGGAGAGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCA 237
Query 235 CGTGGACGGTGCTTCTAATGTTCACGGTGGCCGTCGCTTCGTTTGCTCCGGAGATGGCTT 294
|||||||||||||||| ||||| || || || |||||||||||||||||||||||||| |
Sbjct 238 CGTGGACGGTGCTTCTCATGTTTACTGTTGCGGTCGCTTCGTTTGCTCCGGAGATGGCGT 297
Query 295 TTGTGTCTACGGTGTCGTCTTCGTGCGGAGGAGGAGATGG-TTTCGTGAAGATTCCGATG 353
||||||| ||||| |||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 298 TTGTGTCGACGGTTTCGTCTTCTTGCGGAGGAGGAGATGGGTTT-GTGAAGATTCCGATG 356
Query 354 GATTTTGCAGGGGAGAGTATATGCGTGCCGTCTAATATGGTGAAGAGATCGCGTTTTGAT 413
|| ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 357 GACTTTGCAGGGGAGAGTATATGCGTGCCGGCTAACATGGTGAAGAGATCACGTTTTGAT 416
Query 414 TTGTTTGTGCCTTCGATTTTCGCGGCGGTTATGGTCACTGCTTCGGCTTGTTTGATCCGA 473
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 TTGTTTGTGCCTTCTATTTTCGCGGCGGTTATGGTCACGGCTTCGGCTTGTTTGATCCGA 476
Query 474 TCATGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 512
|| ||||||||||||||||||||||||||||||||||||
Sbjct 477 TCGTGTATTGGCACGGAGAATGTGGATGATTTTTAATAA 515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25046756469
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5