BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07820.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2 566 1e-160
Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2 540 6e-153
Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 292 2e-78
> Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2
Length=483
Score = 566 bits (306), Expect = 1e-160
Identities = 336/351 (96%), Gaps = 0/351 (0%)
Strand=Plus/Plus
Query 161 TCACAGATCTTTGGGTATCAAGTAAAACTGTGAAGTGATGTCgggaagaggaaagggagg 220
||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||
Sbjct 1 TCACAGATCTTTGGGTATCAAGTGAAAGTGTGAAGAGATGTCAGGAAGAGGAAAGGGAGG 60
Query 221 aaaaggattgggaaagggaggagcgaagaggcacaggaaggttctgagggaTAACATTCA 280
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AAAAGGATTGGGAAAGGGAGGAGCGAAGAGGCATAGGAAGGTTCTGAGGGATAACATTCA 120
Query 281 AGGAATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAG 340
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 AGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGCAGAGGTGGTGTCAAGCGTATCAG 180
Query 341 TGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAGAATGTCATCCG 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAGAATGTCATCCG 240
Query 401 TGACGCCGTTACTTACACTGAGCACGCTAGAAGGAAGACGGTGACCGCCATGGATGTTGT 460
|||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 241 TGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCCATGGATGTTGT 300
Query 461 CTACGCTTTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGAGGTTAATC 511
||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 301 CTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGCGGTTAATC 351
> Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2
Length=441
Score = 540 bits (292), Expect = 6e-153
Identities = 314/325 (97%), Gaps = 0/325 (0%)
Strand=Plus/Plus
Query 187 ACTGTGAAGTGATGTCgggaagaggaaagggaggaaaaggattgggaaagggaggagcga 246
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 ACTGTGAAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGA 95
Query 247 agaggcacaggaaggttctgagggaTAACATTCAAGGAATCACCAAGCCTGCCATTCGTC 306
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 96 AGAGGCACAGGAAGGTTCTGAGGGATAACATTCAAGGTATCACCAAGCCTGCTATTCGTC 155
Query 307 GTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 GTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAG 215
Query 367 GTGTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACTTACACTGAGCACG 426
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 216 GTGTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACG 275
Query 427 CTAGAAGGAAGACGGTGACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTA 486
| || |||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 276 CCAGGAGGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCA 335
Query 487 CTCTCTACGGTTTCGGAGGTTAATC 511
|||||||||||||||| ||||||||
Sbjct 336 CTCTCTACGGTTTCGGCGGTTAATC 360
> Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1
Length=501
Score = 292 bits (158), Expect = 2e-78
Identities = 254/299 (85%), Gaps = 12/299 (4%)
Strand=Plus/Plus
Query 210 ggaaagggaggaaaaggattggg-aaagggaggagcgaaga-ggcacaggaaggttctga 267
||||||||||| ||||| ||||| ||| |||||||| || | | ||||||||||||||||
Sbjct 63 GGAAAGGGAGGCAAAGGTTTGGGCAAA-GGAGGAGCCAA-ACGTCACAGGAAGGTTCTGA 120
Query 268 gggaTAACATTCAAGGAATCACCAAGCCTGCCATTCGTCGTCTT-GCTCGTAGAGGTGGT 326
| |||||||| ||||||||||| ||||| || ||||| | || ||||||||||||||
Sbjct 121 GAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAG-ATTGGCTCGTAGAGGTGGA 179
Query 327 GTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCA-GAGGTGTCCTCAAGATCTTCCT 385
|||||||||||||||||||| |||||||| |||| || | || || ||||||||||| |
Sbjct 180 GTCAAGCGTATCAGTGGTCTGATCTACGAGGAGA-CACGTGGCGTTCTCAAGATCTTTTT 238
Query 386 CGAGAATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCTA-GAAGGAAGACGGTGA 444
|||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 239 GGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC-ACGGAGGAAGACGGTGA 297
Query 445 CCGCCATGGATGTTGTCTACGCT-TTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGG 502
| || ||||||||||| || ||| || ||||| ||||| | |||||||| || |||||
Sbjct 298 CTGCTATGGATGTTGTTTATGCTCTT-AAGAGACAAGGAAGAACTCTCTATGGATTCGG 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5