BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07820.1 Length=726 Score E Sequences producing significant alignments: (Bits) Value Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2 566 1e-160 Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2 540 6e-153 Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 292 2e-78 > Ahg470814 jgi|Araly1|470814|fgenesh2_kg.1__768__AT1G07820.2 Length=483 Score = 566 bits (306), Expect = 1e-160 Identities = 336/351 (96%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 161 TCACAGATCTTTGGGTATCAAGTAAAACTGTGAAGTGATGTCgggaagaggaaagggagg 220 ||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| Sbjct 1 TCACAGATCTTTGGGTATCAAGTGAAAGTGTGAAGAGATGTCAGGAAGAGGAAAGGGAGG 60 Query 221 aaaaggattgggaaagggaggagcgaagaggcacaggaaggttctgagggaTAACATTCA 280 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 61 AAAAGGATTGGGAAAGGGAGGAGCGAAGAGGCATAGGAAGGTTCTGAGGGATAACATTCA 120 Query 281 AGGAATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAG 340 ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 AGGTATCACCAAGCCTGCTATTCGTCGTCTTGCTCGCAGAGGTGGTGTCAAGCGTATCAG 180 Query 341 TGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAGAATGTCATCCG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTCCTCGAGAATGTCATCCG 240 Query 401 TGACGCCGTTACTTACACTGAGCACGCTAGAAGGAAGACGGTGACCGCCATGGATGTTGT 460 |||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct 241 TGACGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCCATGGATGTTGT 300 Query 461 CTACGCTTTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGGAGGTTAATC 511 ||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 301 CTACGCTTTGAAGAGGCAAGGACGCACTCTCTACGGTTTCGGCGGTTAATC 351 > Ahg470793 jgi|Araly1|470793|fgenesh2_kg.1__747__AT1G07820.2 Length=441 Score = 540 bits (292), Expect = 6e-153 Identities = 314/325 (97%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 187 ACTGTGAAGTGATGTCgggaagaggaaagggaggaaaaggattgggaaagggaggagcga 246 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 36 ACTGTGAAGAGATGTCAGGAAGAGGAAAGGGAGGAAAAGGATTGGGAAAGGGAGGAGCGA 95 Query 247 agaggcacaggaaggttctgagggaTAACATTCAAGGAATCACCAAGCCTGCCATTCGTC 306 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 96 AGAGGCACAGGAAGGTTCTGAGGGATAACATTCAAGGTATCACCAAGCCTGCTATTCGTC 155 Query 307 GTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAG 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156 GTCTTGCTCGTAGAGGTGGTGTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCAGAG 215 Query 367 GTGTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACTTACACTGAGCACG 426 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 216 GTGTCCTCAAGATCTTCCTCGAGAATGTCATCCGTGACGCCGTTACCTACACTGAGCACG 275 Query 427 CTAGAAGGAAGACGGTGACCGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGTCGTA 486 | || |||||||||||||| ||||||||||||||||||||||||||||||||||| || | Sbjct 276 CCAGGAGGAAGACGGTGACTGCCATGGATGTTGTCTACGCTTTGAAGAGGCAAGGACGCA 335 Query 487 CTCTCTACGGTTTCGGAGGTTAATC 511 |||||||||||||||| |||||||| Sbjct 336 CTCTCTACGGTTTCGGCGGTTAATC 360 > Ahg485010 jgi|Araly1|485010|fgenesh2_kg.5__1002__AT3G45930.1 Length=501 Score = 292 bits (158), Expect = 2e-78 Identities = 254/299 (85%), Gaps = 12/299 (4%) Strand=Plus/Plus Query 210 ggaaagggaggaaaaggattggg-aaagggaggagcgaaga-ggcacaggaaggttctga 267 ||||||||||| ||||| ||||| ||| |||||||| || | | |||||||||||||||| Sbjct 63 GGAAAGGGAGGCAAAGGTTTGGGCAAA-GGAGGAGCCAA-ACGTCACAGGAAGGTTCTGA 120 Query 268 gggaTAACATTCAAGGAATCACCAAGCCTGCCATTCGTCGTCTT-GCTCGTAGAGGTGGT 326 | |||||||| ||||||||||| ||||| || ||||| | || |||||||||||||| Sbjct 121 GAGATAACATCCAAGGAATCACTAAGCCGGCGATTCGGAG-ATTGGCTCGTAGAGGTGGA 179 Query 327 GTCAAGCGTATCAGTGGTCTCATCTACGAAGAGACCA-GAGGTGTCCTCAAGATCTTCCT 385 |||||||||||||||||||| |||||||| |||| || | || || ||||||||||| | Sbjct 180 GTCAAGCGTATCAGTGGTCTGATCTACGAGGAGA-CACGTGGCGTTCTCAAGATCTTTTT 238 Query 386 CGAGAATGTCATCCGTGACGCCGTTACTTACACTGAGCACGCTA-GAAGGAAGACGGTGA 444 |||||||| |||||||||||||||||||||||||||||||| | | ||||||||||||| Sbjct 239 GGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGC-ACGGAGGAAGACGGTGA 297 Query 445 CCGCCATGGATGTTGTCTACGCT-TTGAAGAGGCAAGGTCGTACTCTCTACGGTTTCGG 502 | || ||||||||||| || ||| || ||||| ||||| | |||||||| || ||||| Sbjct 298 CTGCTATGGATGTTGTTTATGCTCTT-AAGAGACAAGGAAGAACTCTCTATGGATTCGG 355 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26724164817 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5