BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07830.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470815 jgi|Araly1|470815|fgenesh2_kg.1__769__AT1G07830.1 878 0.0
> Ahg470815 jgi|Araly1|470815|fgenesh2_kg.1__769__AT1G07830.1
Length=704
Score = 878 bits (475), Expect = 0.0
Identities = 657/737 (89%), Gaps = 43/737 (6%)
Strand=Plus/Plus
Query 112 ATTATATAACTGCAAGCTCAAA-GGAATTGTTTGTTGTTAAAATGTTTCTTACGCGATTT 170
|||| ||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 1 ATTAGATAACTGAAAGCTCAAAGGGAA----TTGTTGTTACAATGTTTCTTACGCGATTT 56
Query 171 GTCGGGAGGAGATTCTTGGCGGCTGCATCGGCGCGATCGGAGTCCACTACAGCAGCAGCA 230
||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 57 GTCGGGAGGAGATTCTTGGCGGCTGCATCGGCGAGATCGGAGTCCACT--A-CTGCAGCA 113
Query 231 GCTGCCTCGA-CGATTCGGACG-CCAACAAATCCACTCGAAGAGTTCTTTGAGTTCGACA 288
|||||||| | ||||||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 114 GCTGCCTC-AGCGATTCGGACGCCCCA-AAATCCACTCGAAGAGTTCTTTGAGTTTGACA 171
Query 289 GAAGCCAAGACGAAGATAAACCTGTTGTCTATGGTCGAGGTTGGAAAGCTTCAGAGCTGC 348
||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 172 GAAGCCAGGATGAAGATAAACCTGTTGTCTACGGTCGAGGTTGGAAAGCTTCAGAACTGC 231
Query 349 GTCTCAAGTCATGGGATGATCTTCAGAAGCTGTGGTACGTTCTTCTCAAAGAGAAAAACA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GTCTCAAGTCATGGGATGATCTTCAGAAGCTGTGGTACGTTCTTCTCAAAGAGAAAAACA 291
Query 409 TGTTGATGACTCAGCGTCAGATGCTTCAGGCTCAGAACATGCAGTTTCCTAACCCTGAAC 468
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 292 TGTTGATGACTCAGCGTCAGATGCTTCAAGCCCAGAACATGCAGTTTCCAAACCCTGAAC 351
Query 469 GCATTCCAAAGGTGAGGAGATCAATGTGCCGCATTAAGCATGTGCTGACCGAGAGAGCGA 528
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 352 GCATTCCAAAGGTGAGGAGATCAATGTGCCGCATTAAGCATGTGCTTACAGAGAGAGCGA 411
Query 529 TTGAAGAACCAGATTCTAGAAGATCAGCCGAGATGAAGAGAATGGTAAATGGTATGTGAT 588
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTGAAGAACCAGATCCTAGAAGATCAGCCGAGATGAAGAGAATGGTAAATGGTATGTGA- 470
Query 589 CCCATTGGCTCTTGTTTTGGCAACCTAGCAGTAAGCACGAGTCAATCCGCAGAGGTGTTG 648
|||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 471 CCCATTGGCTCTTGTTTTGGCAACCTAGCAGTAAGCTCGAGTCTATTCGCAGAGGTGTTT 530
Query 649 AGTTTTTCGGAGTAAGAAATAACGCAT-AGCTTTCA-A-GACTTTGGAACTG-GTCCAAT 704
||||||| |||||||||||||||||| || || | | ||||| || | | |||| |
Sbjct 531 AGTTTTTGGGAGTAAGAAATAACGCAAGAGGTTGAAGAAGACTT-GGTATTTTGTCCT-T 588
Query 705 GATTGTGA-CTG-TAGTAGTG-TCGGCAGTAGAAAAACGTTTGGTTGGTATCTGTACGCA 761
||| || ||| | ||||| | | ||||||||||| ||||||| | | |
Sbjct 589 --TTG-GAGCTGGTC-TAGTGATTG-CAGTAGAAAAATGTTTGGT----A-C---A---- 631
Query 762 CATTTCTGTAACTTATGGTTGATGTTTCTTTTTGAGACACATGTTGGTCAGTGTTGATTC 821
|| ||||||| |||||||||||||||||||| ||||||| |||||||||| | |||||
Sbjct 632 --TTCCTGTAACCTATGGTTGATGTTTCTTTTTAAGACACAAGTTGGTCAGT-T-GATTC 687
Query 822 AGAGCTTTGTCTTTCTC 838
|||||||||||||||||
Sbjct 688 AGAGCTTTGTCTTTCTC 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5