BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07840.2 Length=1433 Score E Sequences producing significant alignments: (Bits) Value Ahg919517 jgi|Araly1|919517|scaffold_100798.1 1493 0.0 > Ahg919517 jgi|Araly1|919517|scaffold_100798.1 Length=976 Score = 1493 bits (808), Expect = 0.0 Identities = 925/981 (94%), Gaps = 9/981 (1%) Strand=Plus/Plus Query 225 CAAGTACTGAACAAGAATCATGGAGGAGATCACCAAACCGGTCCTTGTTGGAATAGTTAA 284 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 2 CAAGTTCTGAACAAGAATCATGGAGGAGATCACCAAACCGGTCCTTGTCGGAATAATTAA 61 Query 285 GAAAGAAGCTCCACAGCTAGCATCCGTGTTGAGAGAAATGAAGAATGTTCTAGATGTGGT 344 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| Sbjct 62 GAAAGAAGCTCCACAGCTAGCATCCGTGTTGAGAGATATGAAGAATGGTCTAGATGGGGT 121 Query 345 TAGGAGCAAAGTGGAAGCTCTGACTGCATTGGTAAAAGCAAACAGTTTTCCGACAGCGGG 404 |||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||| Sbjct 122 TAGGAGCAAAGTTGAAGCTCTGACTGCAATGGTTAGAGCAAACAGTTTTCCGACAGCGGA 181 Query 405 TGGGATAAGTTATCTTGAGGCCAAGCATCTGTTACTTCTAAGTTATTGCCAGGATCTTGT 464 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 182 TGGGATAAGTTATCTTGAGGCCAAGCATCTGTTACTACTAAGTTATTGCCAGGATATTGT 241 Query 465 ATATTATATTCTAAGGAAAGCAAAAGGACTCTCTATTGATGGTCATCCTCTTGTAAGGAG 524 ||||||| | |||||||||||||||||| | ||||||||||| |||||| ||||||| || Sbjct 242 ATATTATCTGCTAAGGAAAGCAAAAGGATTATCTATTGATGGCCATCCTGTTGTAAGAAG 301 Query 525 CCTTGTAGAGATACGTATGTTTCTGGAAAAGATTCGTCCCATAGACAAAAAACTTCAGTA 584 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 CCTTGTAGAGATACGAATGTTTCTGGAAAAGATTCGTCCCATAGACAAAAAACTTCAGTA 361 Query 585 CCAGATTCAGAAGCTCACCACAGCCGGTGGGCCTGTGACAGAGCTAGCTCATTCCGAGGG 644 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 362 CCAGATTCAGAAGCTCACCACAGCCGGTGGGTCTGTGACAGAGCTAGCTCATTCCGAGGG 421 Query 645 AAAGGGGTCGTGTGAAGCCCAAAAATCTGAAGATCTTTCAAATTATAAGCCTAAACCTGA 704 |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 422 AAAGGGATCGGGTGATGCCCAAAAATCTGAAGATCTTTCAAATTATAAGCCTAAACCAGA 481 Query 705 CTTACTTGCTGACAAAGA-GG--ATGACCAAGAGGATGATGGTGTTTATCGACCCCCGAA 761 |||||||||||||||| | || |||||||||||||||||| | || ||||||||||||| Sbjct 482 CTTACTTGCTGACAAAAATGGGGATGACCAAGAGGATGATG-T-TT-ATCGACCCCCGAA 538 Query 762 ATTTGCCCCTATGTCTATGGAAGATAAGACTTCAAAACAAGAAAGAGATGCTGCCAGAAA 821 |||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||| Sbjct 539 ATTTGCTCCTATGTCTATGGATGATAAGACGTCAAAACAGGAAAGAGATGCTGCCAGAAA 598 Query 822 AGAGAAACACTTTTTTAGACAAGCCACTGAAAATACATACATGAAAGATGTGTTGGACGA 881 |||||||||||| || ||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 599 AGAGAAACACTTATTAAGAGAAGCCACTGGAAATACATACATGAAAGATGTGTTGGACGA 658 Query 882 TCTGGAGGACAGGCCTGAAGAGATTAGAGACTATTATGGGGTTGAGAGCAATGAGCAGAA 941 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 659 TCTGGAGGACAGGCCTGAAGAGATCAGAGACTATTATGGGGTTGAGAGCAATGAGCAGAA 718 Query 942 GAGGTTTATGGCACAGTATGAAAGGCAACAAAAGGCAGAAGAAGAGCTCTTTACCCGGGC 1001 ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 719 GAGGTTTATGGCACAGTATGAAAGGCAACAACGGGCAGAAGAAGAGCTGTTTACCCGGGC 778 Query 1002 ACCTCGCACTAAAGAGGATAAGAAGAGAGAGAAGCGCTTGAAATCAAGCAGCGGGTTGCA 1061 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACCTCGCACTAAAGAGGATAAGAAGAGAGAGAAGCGCTTGAAATCAAGCAGCGGGTTGCT 838 Query 1062 TGAACTAACCGAGAACTTTTACGATGATATCAAGTTCTTGGATAAGGATGGTGAAAAGCC 1121 |||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 839 TGAACTGACTGAGGACTTTTACGATGACATCAAGTTCTTGGATAAGGATGGTGAAAAGCC 898 Query 1122 AAGAAGCTTCGGCCGTAATAAAAGGGGAGGGCCATTCAAGAAAAGAAAGACAAGGCACTG 1181 ||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 899 AAG---CTTTGGCCGTAATAAAAGGGGAGGACAATTCAAGAAAAGAAAGACAAGGCACTG 955 Query 1182 ATATGGATACACCAGTGGTTC 1202 ||||||||||||||||||||| Sbjct 956 ATATGGATACACCAGTGGTTC 976 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53592974715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5