BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07840.2
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919517 jgi|Araly1|919517|scaffold_100798.1 1493 0.0
> Ahg919517 jgi|Araly1|919517|scaffold_100798.1
Length=976
Score = 1493 bits (808), Expect = 0.0
Identities = 925/981 (94%), Gaps = 9/981 (1%)
Strand=Plus/Plus
Query 225 CAAGTACTGAACAAGAATCATGGAGGAGATCACCAAACCGGTCCTTGTTGGAATAGTTAA 284
||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 2 CAAGTTCTGAACAAGAATCATGGAGGAGATCACCAAACCGGTCCTTGTCGGAATAATTAA 61
Query 285 GAAAGAAGCTCCACAGCTAGCATCCGTGTTGAGAGAAATGAAGAATGTTCTAGATGTGGT 344
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 62 GAAAGAAGCTCCACAGCTAGCATCCGTGTTGAGAGATATGAAGAATGGTCTAGATGGGGT 121
Query 345 TAGGAGCAAAGTGGAAGCTCTGACTGCATTGGTAAAAGCAAACAGTTTTCCGACAGCGGG 404
|||||||||||| ||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 122 TAGGAGCAAAGTTGAAGCTCTGACTGCAATGGTTAGAGCAAACAGTTTTCCGACAGCGGA 181
Query 405 TGGGATAAGTTATCTTGAGGCCAAGCATCTGTTACTTCTAAGTTATTGCCAGGATCTTGT 464
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 182 TGGGATAAGTTATCTTGAGGCCAAGCATCTGTTACTACTAAGTTATTGCCAGGATATTGT 241
Query 465 ATATTATATTCTAAGGAAAGCAAAAGGACTCTCTATTGATGGTCATCCTCTTGTAAGGAG 524
||||||| | |||||||||||||||||| | ||||||||||| |||||| ||||||| ||
Sbjct 242 ATATTATCTGCTAAGGAAAGCAAAAGGATTATCTATTGATGGCCATCCTGTTGTAAGAAG 301
Query 525 CCTTGTAGAGATACGTATGTTTCTGGAAAAGATTCGTCCCATAGACAAAAAACTTCAGTA 584
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CCTTGTAGAGATACGAATGTTTCTGGAAAAGATTCGTCCCATAGACAAAAAACTTCAGTA 361
Query 585 CCAGATTCAGAAGCTCACCACAGCCGGTGGGCCTGTGACAGAGCTAGCTCATTCCGAGGG 644
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 362 CCAGATTCAGAAGCTCACCACAGCCGGTGGGTCTGTGACAGAGCTAGCTCATTCCGAGGG 421
Query 645 AAAGGGGTCGTGTGAAGCCCAAAAATCTGAAGATCTTTCAAATTATAAGCCTAAACCTGA 704
|||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 AAAGGGATCGGGTGATGCCCAAAAATCTGAAGATCTTTCAAATTATAAGCCTAAACCAGA 481
Query 705 CTTACTTGCTGACAAAGA-GG--ATGACCAAGAGGATGATGGTGTTTATCGACCCCCGAA 761
|||||||||||||||| | || |||||||||||||||||| | || |||||||||||||
Sbjct 482 CTTACTTGCTGACAAAAATGGGGATGACCAAGAGGATGATG-T-TT-ATCGACCCCCGAA 538
Query 762 ATTTGCCCCTATGTCTATGGAAGATAAGACTTCAAAACAAGAAAGAGATGCTGCCAGAAA 821
|||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 539 ATTTGCTCCTATGTCTATGGATGATAAGACGTCAAAACAGGAAAGAGATGCTGCCAGAAA 598
Query 822 AGAGAAACACTTTTTTAGACAAGCCACTGAAAATACATACATGAAAGATGTGTTGGACGA 881
|||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 AGAGAAACACTTATTAAGAGAAGCCACTGGAAATACATACATGAAAGATGTGTTGGACGA 658
Query 882 TCTGGAGGACAGGCCTGAAGAGATTAGAGACTATTATGGGGTTGAGAGCAATGAGCAGAA 941
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 TCTGGAGGACAGGCCTGAAGAGATCAGAGACTATTATGGGGTTGAGAGCAATGAGCAGAA 718
Query 942 GAGGTTTATGGCACAGTATGAAAGGCAACAAAAGGCAGAAGAAGAGCTCTTTACCCGGGC 1001
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 719 GAGGTTTATGGCACAGTATGAAAGGCAACAACGGGCAGAAGAAGAGCTGTTTACCCGGGC 778
Query 1002 ACCTCGCACTAAAGAGGATAAGAAGAGAGAGAAGCGCTTGAAATCAAGCAGCGGGTTGCA 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCTCGCACTAAAGAGGATAAGAAGAGAGAGAAGCGCTTGAAATCAAGCAGCGGGTTGCT 838
Query 1062 TGAACTAACCGAGAACTTTTACGATGATATCAAGTTCTTGGATAAGGATGGTGAAAAGCC 1121
|||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 TGAACTGACTGAGGACTTTTACGATGACATCAAGTTCTTGGATAAGGATGGTGAAAAGCC 898
Query 1122 AAGAAGCTTCGGCCGTAATAAAAGGGGAGGGCCATTCAAGAAAAGAAAGACAAGGCACTG 1181
||| ||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 899 AAG---CTTTGGCCGTAATAAAAGGGGAGGACAATTCAAGAAAAGAAAGACAAGGCACTG 955
Query 1182 ATATGGATACACCAGTGGTTC 1202
|||||||||||||||||||||
Sbjct 956 ATATGGATACACCAGTGGTTC 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5