BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G07850.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910480 jgi|Araly1|910480|Al_scaffold_0001_734 1524 0.0
> Ahg910480 jgi|Araly1|910480|Al_scaffold_0001_734
Length=1569
Score = 1524 bits (825), Expect = 0.0
Identities = 909/951 (96%), Gaps = 0/951 (0%)
Strand=Plus/Plus
Query 556 AGGTACACCCATCCAGTAGGGGACAGATCAGCGGTGAGGATATCTCGAGTAGTGACGGAG 615
|||||||| ||||| |||||||||||||| || |||||||||||||| |||||||| |||
Sbjct 592 AGGTACACGCATCCGGTAGGGGACAGATCGGCAGTGAGGATATCTCGGGTAGTGACAGAG 651
Query 616 ACGCTTCGGCTAGGCAAAAAAGGTGTACGGTGGTTCGTGATGGGAGACGACGACACAGTG 675
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ACGCTACGGCTAGGCAAAAAAGGTGTACGGTGGTTCGTGATGGGAGACGACGACACAGTG 711
Query 676 TTTGTGGTGGACAATGTGGTAAACGTCCTTTCAAAGTACGACCACACTCAGTTCTACTAC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTTGTGGTGGACAATGTGGTAAACGTCCTTTCAAAGTACGACCACACTCAGTTCTACTAC 771
Query 736 GTTGGTAGCTCCTCGGAGGCTCACGTTCAGAACATCTTCTTCTCATATTCAATGGCATTT 795
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GTTGGTAGCTCCTCTGAGGCTCACGTTCAGAACATCTTCTTCTCATATTCAATGGCATTT 831
Query 796 GGAGGCGGTGGGTTCGCCATCAGCTATGCTCTAGCCCTCGAGCTCTTGCGGATGCAGGAC 855
||||||||||| || ||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 832 GGAGGCGGTGGATTTGCCATTAGCTACGCTCTAGCCCTCGAGCTCTCGCGGATGCAGGAC 891
Query 856 CGTTGCATCCAACGGTATCCTGGTCTCTACGGCAGTGATGATCGCATCCAAGCTTGTATG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 892 CGTTGCATCCAACGGTATCCTGGTCTCTACGGCAGTGATGATCGCATCCAAGCCTGTATG 951
Query 916 ACTGAACTTGGTGTACCCCTCACCAAAGAACCTGGCTTTCACCAGTACGATGTTTATGGG 975
|| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 952 ACCGAGCTCGGCGTACCCCTCACCAAAGAACCTGGCTTTCACCAGTATGATGTTTATGGG 1011
Query 976 GACTTATTGGGGTTATTAGGTGCACACCCAGTGGCTCCCTTGGTGTCGCTGCACCACATC 1035
|||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1012 GACTTATTGGGGCTATTAGGTGCACACCCGGTGGCTCCTTTGGTGTCGCTGCACCATATC 1071
Query 1036 GATGTGGTGCAGCCGATATTCCCAAAGATGAAGCGGTCACGTGCACTACGACACTTGATG 1095
|| |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||
Sbjct 1072 GACGTGGTGCAGCCGATATTCCCGAAGATGAAGCGCTCACGTGCGCTCCGACACTTGATG 1131
Query 1096 TCTTCAGCAGTTCTTGACCCAGCCAGCATATTCCAGCAGTCCATCTGCTACGACCAGAAC 1155
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TCGTCAGCAGTTCTTGACCCAGCCAGCATATTCCAGCAGTCCATCTGCTACGACCAGAAC 1191
Query 1156 CGGTTCTGGTCCATCTCGGTCTCATGGGGTTTCGTAGTCCAGATAATCCGAGGCATCATA 1215
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1192 CGGTTCTGGTCCATTTCGGTCTCATGGGGATTCGTAGTCCAGATAATCCGAGGCATCATT 1251
Query 1216 TCCCCTCGCGAACTTGAGATGCCTTCAAGAACATTCCTCAACTGGTTCCGCAAAGCCGAC 1275
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TCCCCTCGCGAGCTTGAGATGCCTTCAAGAACATTCCTCAACTGGTTCCGCAAAGCCGAC 1311
Query 1276 TACATTGGTTACGCGTTTAACACGAGACCAGTGTCGAGGCATCCGTGCCAAAGACCATTT 1335
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1312 TACATTGGTTACGCGTTTAACACGAGACCAGTATCGAGACATCCGTGCCAAAGACCATTC 1371
Query 1336 GTGTTTTACTTAAACTCGGCTAAGTATGATGAAGGACGTCGCCAAGTGATTGGATACTAC 1395
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1372 GTGTTTTACTTAAACTCAGCTAAGTATGATGAAGGACGTCGCCAAGTAATTGGATACTAC 1431
Query 1396 AACTTGGACAAGACAAGGCGGATTCCCGGGTGCCGATGGAGGCTCGATTCGCCTGGAAAG 1455
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||
Sbjct 1432 AACTTGGACAAGACAAGGCGGATTCCAGGCTGCCGATGGAGGCTTGATTCGCCTGGCAAG 1491
Query 1456 ATCGATTCAGTCGTCGTTCTCAAGCGACCTGATCCCCTCCGATGGCACAAG 1506
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 ATCGATTCAGTCGTCGTTCTCAAGCGACCTGATCCCCTCCGATGGCACAAG 1542
Score = 815 bits (441), Expect = 0.0
Identities = 523/562 (93%), Gaps = 7/562 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAACAGTTCGAGCT-CTAACACCAATCTCAGCAACCCTAAGAACATACTTCTAGA 59
||||||||||||||||||| | ||||||||||| ||||| |||||||||| |||||||||
Sbjct 1 ATGGGAAACAGTTCGAGCTAC-AACACCAATCTGAGCAATCCTAAGAACAGACTTCTAGA 59
Query 60 AGATCATCACCACCAAAGAAACCAAG-CACAAAACCACAGCAACTCTGCTCGGACCTCTC 118
|||||||||||||| ||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct 60 AGATCATCACCACCCTAGAAACC-AGCCACCAAACCACAGCAACTCTGCTCGGTCCTCTC 118
Query 119 ACCTAAGCTTCTTAAGATCTCCTCTGCCATGGCTCTTCATCTTCCTCTTCTTCCTCCCTT 178
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 119 ACCTAAGCTTCTTACGATCTCCTCTGCCATGGCTCTTCATTTTCCTCTTCTTCCTCCCTT 178
Query 179 TGCTTCTCATCTCTACAACCGGAGGAGGTGGCTCACGCAAGACCTGCCGTCCCTCTTCTT 238
|||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 179 TGCTTCTCATCTCTACCACGGGAGGAGGTGGCGGACGCAAGACCTGCCGTCCCTCTTCTT 238
Query 239 CTACCTACAGCCACCTGTCCCTAGTCGACAAAGCAAACTCATCTTCCTCTGTTG-TTC-- 295
||||||| |||||||||||||| ||||||||| ||||||| ||||||||||||| |||
Sbjct 239 CTACCTATAGCCACCTGTCCCTTGTCGACAAAACAAACTCTTCTTCCTCTGTTGTTTCTG 298
Query 296 CCGAGGAAGAAGACGACGATGTGCCTCCACGTGTCCCCGCTCTTTACCCGCAGCGACCAA 355
||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 299 AGGAGGAAGAAGACGACAATGTGCCTCCACGCGTCCCCGCTCTTTACCCACAGCGACCAA 358
Query 356 GGATGTTCAACACGACGCTTGATCACATCGTTTTCGGGATTGCCGCGTCCTCTGTTCTGT 415
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 359 GGATGTTCAACACGACGCTTGATCACATCGTTTTTGGGATCGCCGCGTCCTCTGTTCTGT 418
Query 416 GGGAGACGAGAAAAGAGTACATCAAATCATGGTGGCGACCTGGTAAAACTCGTGGCGTTG 475
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 419 GGGAGACAAGAAAAGAGTACATCAAATCATGGTGGCGACCTGGTAAGACTCGAGGCGTAG 478
Query 476 TCTGGATTGACAAGAGAGTCAGAACTTACCGAAACGATCCCCTTCCAGAAATCAGAATCT 535
|||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 479 TCTGGATTGACAAGAGAGTCCGAACTTACCGAAACGATCCTCTTCCCGAAATCAGAATCT 538
Query 536 CCCAAGACACCTCACGGTTCAG 557
|||||||||||||||| |||||
Sbjct 539 CCCAAGACACCTCACGTTTCAG 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5