BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G07860.1

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470820 jgi|Araly1|470820|fgenesh2_kg.1__774__AT1G07860.1          577    3e-164


> Ahg470820 jgi|Araly1|470820|fgenesh2_kg.1__774__AT1G07860.1
Length=422

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 395/433 (91%), Gaps = 13/433 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGGAAAGATCATTCTCTCAGCTCCCGATCTCTTCTTCTCACATTGGCA-GAAGGAC  59
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  1    ATGGCGGAAAGATCATTCTCTCAGCTCCCGATCTCTTCTTCTCACATTGGCAGGAA-GAC  59

Query  60   AGGA-AACACCCGGAGAGGGATATTTCCGGTATCGGAGTATTGGATCCATGCAATTCCGG  118
             | | ||| | ||||||||||| ||||||||||||||||| |||||||| |||||||| |
Sbjct  60   -GCAGAACTCGCGGAGAGGGATTTTTCCGGTATCGGAGTACTGGATCCACGCAATTCCCG  118

Query  119  TGATCGTTTTTCTCTGTTTCTTCACCCTCTGGATTTTCTCCCACTCAGTGAGCGTCATGA  178
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  119  TGATCGTTTTTCTCTGCTTCTTCACCCTTTGGATTTTCTCCCACTCAGTGAGCGTCATGA  178

Query  179  ACGATGGAGAGATAATGTCGATACATCGTCTTGAGAAATCCATGGCCGTGAGAAACGAGT  238
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  179  ACGATGGAGAGATAATGTCGATACATCGTCTCGAGAAATCCATGGCTGTGAGAAACGAGT  238

Query  239  CTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTCCTCAGCTCTCG  298
            |||||||||||||||||||||||||||||||||||||||||||||||||   || |||||
Sbjct  239  CTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTC---AGGTCTCG  295

Query  299  TCGCCGTCGTCTCTACCAATCAGAATCTCACAACTTTTCACAACGCAACTCAATCGCAGC  358
            |||   || |||  |||||||| ||||| ||||||  |||||||||||| ||||||||||
Sbjct  296  TCG---TC-TCT--ACCAATCAAAATCTGACAACTCCTCACAACGCAACCCAATCGCAGC  349

Query  359  AAAATGCAACCCAGTCGGTGAACAAAGCAAAACAGCCACACGCAGTCTAATCTCTGAACG  418
            |||| || || || ||||||||||||||||| ||||||||||| |||| |||||||| ||
Sbjct  350  AAAACGCCACTCAATCGGTGAACAAAGCAAAGCAGCCACACGCCGTCTGATCTCTGACCG  409

Query  419  GAGAAAAGTTTCT  431
            |||||||||||||
Sbjct  410  GAGAAAAGTTTCT  422



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834569435


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5