BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G07860.1 Length=439 Score E Sequences producing significant alignments: (Bits) Value Ahg470820 jgi|Araly1|470820|fgenesh2_kg.1__774__AT1G07860.1 577 3e-164 > Ahg470820 jgi|Araly1|470820|fgenesh2_kg.1__774__AT1G07860.1 Length=422 Score = 577 bits (312), Expect = 3e-164 Identities = 395/433 (91%), Gaps = 13/433 (3%) Strand=Plus/Plus Query 1 ATGGCGGAAAGATCATTCTCTCAGCTCCCGATCTCTTCTTCTCACATTGGCA-GAAGGAC 59 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1 ATGGCGGAAAGATCATTCTCTCAGCTCCCGATCTCTTCTTCTCACATTGGCAGGAA-GAC 59 Query 60 AGGA-AACACCCGGAGAGGGATATTTCCGGTATCGGAGTATTGGATCCATGCAATTCCGG 118 | | ||| | ||||||||||| ||||||||||||||||| |||||||| |||||||| | Sbjct 60 -GCAGAACTCGCGGAGAGGGATTTTTCCGGTATCGGAGTACTGGATCCACGCAATTCCCG 118 Query 119 TGATCGTTTTTCTCTGTTTCTTCACCCTCTGGATTTTCTCCCACTCAGTGAGCGTCATGA 178 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 119 TGATCGTTTTTCTCTGCTTCTTCACCCTTTGGATTTTCTCCCACTCAGTGAGCGTCATGA 178 Query 179 ACGATGGAGAGATAATGTCGATACATCGTCTTGAGAAATCCATGGCCGTGAGAAACGAGT 238 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 179 ACGATGGAGAGATAATGTCGATACATCGTCTCGAGAAATCCATGGCTGTGAGAAACGAGT 238 Query 239 CTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTCCTCAGCTCTCG 298 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 239 CTCATGTCAGTTTAGCGATTCTTGCTTCCTCTGCTGTTTCACCAGCCTC---AGGTCTCG 295 Query 299 TCGCCGTCGTCTCTACCAATCAGAATCTCACAACTTTTCACAACGCAACTCAATCGCAGC 358 ||| || ||| |||||||| ||||| |||||| |||||||||||| |||||||||| Sbjct 296 TCG---TC-TCT--ACCAATCAAAATCTGACAACTCCTCACAACGCAACCCAATCGCAGC 349 Query 359 AAAATGCAACCCAGTCGGTGAACAAAGCAAAACAGCCACACGCAGTCTAATCTCTGAACG 418 |||| || || || ||||||||||||||||| ||||||||||| |||| |||||||| || Sbjct 350 AAAACGCCACTCAATCGGTGAACAAAGCAAAGCAGCCACACGCCGTCTGATCTCTGACCG 409 Query 419 GAGAAAAGTTTCT 431 ||||||||||||| Sbjct 410 GAGAAAAGTTTCT 422 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15834569435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5